Wall clock time and date at job start Wed Apr 1 2020 03:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50698 * 120.00078 * 2 1 4 4 N 1.46911 * 109.46760 * 124.11533 * 3 2 1 5 5 C 1.46902 * 110.99597 * 298.60303 * 4 3 2 6 6 C 1.50699 * 109.47452 * 287.97382 * 5 4 3 7 7 H 1.07998 * 119.99930 * 354.68943 * 6 5 4 8 8 C 1.37872 * 119.99802 * 174.68500 * 6 5 4 9 9 N 1.31517 * 120.00303 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99767 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47108 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47197 * 120.00184 * 10 8 6 13 13 H 1.48506 * 109.46844 * 240.00037 * 10 8 6 14 14 C 1.46891 * 111.00144 * 62.56221 * 4 3 2 15 15 C 1.50700 * 109.47490 * 66.04680 * 14 4 3 16 16 O 1.21287 * 119.99747 * 359.97438 * 15 14 4 17 17 N 1.34775 * 120.00235 * 180.02562 * 15 14 4 18 18 C 1.46537 * 124.97678 * 359.96627 * 17 15 14 19 19 C 1.53741 * 105.19530 * 180.02562 * 18 17 15 20 20 C 1.51216 * 104.58451 * 0.02562 * 19 18 17 21 21 C 1.38185 * 130.97323 * 179.97438 * 20 19 18 22 22 C 1.38225 * 120.14846 * 179.97438 * 21 20 19 23 23 C 1.38292 * 119.82981 * 359.97438 * 22 21 20 24 24 N 1.48012 * 119.88821 * 179.97438 * 23 22 21 25 25 O 1.21795 * 120.00122 * 0.02562 * 24 23 22 26 26 O 1.21806 * 120.00173 * 180.02562 * 24 23 22 27 27 C 1.37840 * 120.22563 * 0.25603 * 23 22 21 28 28 C 1.38562 * 108.55848 * 359.97438 * 20 19 18 29 29 H 1.08004 * 120.00046 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.00320 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.00046 * 180.02562 * 2 1 3 32 32 H 1.08990 * 109.47205 * 4.11556 * 3 2 1 33 33 H 1.09000 * 109.47091 * 244.10896 * 3 2 1 34 34 H 1.09004 * 109.46853 * 47.97320 * 5 4 3 35 35 H 1.08993 * 109.46826 * 167.97253 * 5 4 3 36 36 H 0.97004 * 119.99672 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.47070 * 306.04243 * 14 4 3 38 38 H 1.09001 * 109.47160 * 186.04921 * 14 4 3 39 39 H 1.09005 * 110.29714 * 61.11446 * 18 17 15 40 40 H 1.08993 * 110.38980 * 299.01516 * 18 17 15 41 41 H 1.09007 * 110.41716 * 241.23144 * 19 18 17 42 42 H 1.08999 * 110.41553 * 118.78243 * 19 18 17 43 43 H 1.07999 * 119.92200 * 0.02562 * 21 20 19 44 44 H 1.08000 * 120.08037 * 180.02562 * 22 21 20 45 45 H 1.07998 * 119.85936 * 179.74043 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9810 1.3407 1.1468 5 6 2.2432 1.2544 2.4141 6 6 1.5165 2.5511 2.6616 7 1 1.6624 3.3878 1.9945 8 6 0.6652 2.6693 3.7397 9 7 0.4870 1.6503 4.5518 10 14 -0.2362 4.2766 4.0461 11 1 0.1335 5.2595 2.9961 12 1 -1.7013 4.0376 4.0073 13 1 0.1431 4.8105 5.3790 14 6 3.9869 0.2746 1.0494 15 6 4.8823 0.5352 -0.1343 16 8 4.7001 1.5127 -0.8289 17 7 5.8849 -0.3184 -0.4218 18 6 6.2021 -1.5289 0.3406 19 6 7.4120 -2.1508 -0.3757 20 6 7.6966 -1.2125 -1.5269 21 6 8.6647 -1.2546 -2.5120 22 6 8.7214 -0.2621 -3.4724 23 6 7.8059 0.7741 -3.4458 24 7 7.8658 1.8378 -4.4733 25 8 8.7201 1.7994 -5.3405 26 8 7.0608 2.7516 -4.4515 27 6 6.8414 0.8227 -2.4623 28 6 6.7754 -0.1781 -1.4908 29 1 -0.5400 0.9353 0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3575 2.1322 0.0737 33 1 2.6337 1.3953 -0.9245 34 1 1.5224 0.4385 2.3600 35 1 2.9422 1.0683 3.2294 36 1 -0.1117 1.7337 5.3105 37 1 3.4873 -0.6858 0.9226 38 1 4.5852 0.2553 1.9603 39 1 5.3579 -2.2183 0.3241 40 1 6.4609 -1.2736 1.3681 41 1 7.1641 -3.1450 -0.7475 42 1 8.2688 -2.1981 0.2965 43 1 9.3781 -2.0652 -2.5320 44 1 9.4783 -0.2963 -4.2421 45 1 6.1320 1.6368 -2.4446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292298144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:28 Heat of formation + Delta-G solvation = 17.119430 kcal Electronic energy + Delta-G solvation = -29973.830418 eV Core-core repulsion = 25767.204376 eV Total energy + Delta-G solvation = -4206.626042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.37350 -42.39905 -40.39344 -38.49070 -37.74940 -37.65808 -34.86251 -33.91141 -33.75186 -31.88414 -31.09673 -29.84210 -28.27669 -27.30252 -26.19638 -24.62995 -24.16203 -22.86057 -22.64594 -21.47286 -20.39397 -19.89608 -19.63355 -18.70223 -18.49235 -18.18218 -17.67883 -17.43831 -16.86931 -16.40960 -16.28938 -16.17938 -15.86681 -15.55768 -15.17849 -14.98557 -14.68225 -14.24591 -14.13234 -14.00607 -13.67026 -13.25010 -13.09880 -13.02960 -12.92482 -12.87681 -12.80013 -12.66949 -12.59647 -12.38459 -12.32611 -12.28470 -12.22250 -12.07795 -11.64996 -11.51684 -10.96231 -10.59913 -10.39345 -10.21256 -9.20091 -9.02452 -8.20136 -6.27247 -1.32531 -0.17514 0.20600 0.28564 1.32706 1.37057 1.39166 1.42263 1.45594 1.52512 2.25973 2.39649 2.97138 3.12857 3.31432 3.31600 3.50379 3.56228 3.63958 3.77164 3.97552 4.02714 4.05607 4.17373 4.28385 4.35472 4.37764 4.54290 4.55419 4.68725 4.76983 4.86318 4.93040 4.98994 5.01180 5.05363 5.07907 5.15079 5.17591 5.30491 5.49947 5.63382 5.63968 5.84826 5.96151 6.08924 6.27247 6.40888 6.54096 6.84039 6.88568 7.41231 8.89680 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014500 B = 0.002650 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.521398 B =10564.565884 C =11446.543719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.194 4.194 3 C 0.091 3.909 4 N -0.534 5.534 5 C 0.211 3.789 6 C -0.520 4.520 7 H 0.047 0.953 8 C 0.013 3.987 9 N -0.925 5.925 10 Si 0.955 3.045 11 H -0.274 1.274 12 H -0.277 1.277 13 H -0.276 1.276 14 C 0.045 3.955 15 C 0.523 3.477 16 O -0.535 6.535 17 N -0.557 5.557 18 C 0.080 3.920 19 C -0.079 4.079 20 C -0.066 4.066 21 C -0.058 4.058 22 C -0.069 4.069 23 C -0.039 4.039 24 N 0.030 4.970 25 O -0.127 6.127 26 O -0.235 6.235 27 C -0.107 4.107 28 C 0.131 3.869 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.055 0.945 33 H 0.075 0.925 34 H -0.005 1.005 35 H 0.010 0.990 36 H 0.264 0.736 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.205 0.795 44 H 0.182 0.818 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.734 -18.056 -10.493 28.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.213 4.213 3 C -0.036 4.036 4 N -0.257 5.257 5 C 0.086 3.914 6 C -0.558 4.558 7 H 0.065 0.935 8 C -0.185 4.185 9 N -0.566 5.566 10 Si 0.780 3.220 11 H -0.199 1.199 12 H -0.202 1.202 13 H -0.202 1.202 14 C -0.086 4.086 15 C 0.314 3.686 16 O -0.410 6.410 17 N -0.281 5.281 18 C -0.040 4.040 19 C -0.115 4.115 20 C -0.070 4.070 21 C -0.076 4.076 22 C -0.089 4.089 23 C -0.123 4.123 24 N 0.545 4.455 25 O -0.356 6.356 26 O -0.433 6.433 27 C -0.129 4.129 28 C 0.034 3.966 29 H 0.102 0.898 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.012 0.988 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.222 0.778 44 H 0.199 0.801 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 18.485 -17.476 -10.026 27.343 hybrid contribution -1.577 1.303 0.013 2.046 sum 16.907 -16.173 -10.013 25.450 Atomic orbital electron populations 1.23898 0.96020 1.01967 0.99240 1.23541 0.97075 0.99289 1.01403 1.21207 0.94156 0.94605 0.93667 1.61963 1.15654 1.44409 1.03697 1.19426 0.91375 0.95794 0.84794 1.21383 1.25036 0.98896 1.10508 0.93474 1.25646 0.97415 0.99702 0.95773 1.70032 1.38461 1.31869 1.16212 0.85553 0.78390 0.79987 0.78031 1.19887 1.20231 1.20194 1.21979 0.94565 0.95897 0.96187 1.21154 0.80037 0.81204 0.86235 1.90677 1.70061 1.28895 1.51365 1.46201 1.28481 1.26387 1.27070 1.22788 1.00365 0.83722 0.97079 1.21472 0.98320 0.98676 0.93048 1.21047 0.93290 0.94622 0.97993 1.20927 0.97678 0.98660 0.90345 1.21384 0.96519 0.90389 1.00631 1.20856 1.04603 0.93141 0.93696 1.43946 0.98793 1.01600 1.01203 1.94428 1.29337 1.82077 1.29738 1.94629 1.37731 1.28952 1.81981 1.20469 0.98699 1.00258 0.93510 1.18314 0.92994 0.95486 0.89776 0.89791 0.86782 0.86495 0.92611 0.90669 0.98756 0.97178 0.92683 0.89625 0.86556 0.87324 0.87475 0.84520 0.84666 0.77765 0.80116 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.99 14.32 67.79 0.97 -5.02 16 2 C -0.19 -6.87 7.46 25.65 0.19 -6.68 16 3 C 0.09 3.81 5.32 85.55 0.45 4.27 16 4 N -0.53 -23.11 4.39 -909.96 -4.00 -27.11 16 5 C 0.21 10.66 4.60 85.56 0.39 11.05 16 6 C -0.52 -29.51 8.51 25.60 0.22 -29.30 16 7 H 0.05 2.78 7.68 -2.91 -0.02 2.76 16 8 C 0.01 0.75 5.46 84.65 0.46 1.21 16 9 N -0.93 -53.57 13.29 21.45 0.28 -53.29 16 10 Si 0.95 44.84 29.54 68.60 2.03 46.86 16 11 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 14 C 0.04 1.41 4.41 85.56 0.38 1.79 16 15 C 0.52 16.51 7.50 87.66 0.66 17.16 16 16 O -0.53 -22.02 12.49 -3.05 -0.04 -22.06 16 17 N -0.56 -12.24 3.13 -629.48 -1.97 -14.21 16 18 C 0.08 0.76 6.67 86.62 0.58 1.34 16 19 C -0.08 -0.22 6.93 30.26 0.21 -0.01 16 20 C -0.07 -0.71 6.23 -19.64 -0.12 -0.83 16 21 C -0.06 -0.39 10.04 22.25 0.22 -0.17 16 22 C -0.07 -0.94 9.56 22.28 0.21 -0.72 16 23 C -0.04 -0.96 6.84 36.30 0.25 -0.72 16 24 N 0.03 0.91 4.45 -46.66 -0.21 0.70 16 25 O -0.13 -3.51 18.44 18.89 0.35 -3.16 16 26 O -0.23 -8.67 18.43 18.88 0.35 -8.32 16 27 C -0.11 -3.06 8.97 22.51 0.20 -2.86 16 28 C 0.13 2.88 6.62 38.28 0.25 3.13 16 29 H 0.08 3.13 7.84 -2.91 -0.02 3.11 16 30 H 0.11 3.27 8.06 -2.91 -0.02 3.24 16 31 H 0.12 3.51 6.75 -2.91 -0.02 3.49 16 32 H 0.06 2.62 7.01 -2.39 -0.02 2.61 16 33 H 0.08 3.18 5.84 -2.39 -0.01 3.16 16 34 H -0.01 -0.28 6.77 -2.39 -0.02 -0.30 16 35 H 0.01 0.53 7.81 -2.39 -0.02 0.51 16 36 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 37 H 0.09 2.28 6.26 -2.39 -0.01 2.26 16 38 H 0.12 3.29 7.86 -2.39 -0.02 3.28 16 39 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.14 -0.36 8.14 -2.38 -0.02 -0.38 16 42 H 0.14 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.21 -0.68 8.06 -2.91 -0.02 -0.70 16 44 H 0.18 1.53 7.61 -2.91 -0.02 1.51 16 45 H 0.13 4.74 5.81 -2.91 -0.02 4.72 16 Total: -1.00 -82.21 379.14 3.35 -78.86 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.02 Total: 8.07 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 5.53 Total: -6.36 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -5.89 Total: -93.90 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: 0.66 Total: -33.54 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -82.21 3.35 -78.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292298144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.981 kcal (2) G-P(sol) polarization free energy of solvation -82.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds