Wall clock time and date at job start Wed Apr 1 2020 04:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47053 * 125.36601 * 3 2 1 5 5 C 1.37097 * 120.00597 * 283.04799 * 4 3 2 6 6 H 1.07999 * 119.99955 * 51.82577 * 5 4 3 7 7 C 1.38943 * 120.00301 * 231.83310 * 5 4 3 8 8 N 1.31407 * 120.00300 * 187.15469 * 7 5 4 9 9 Si 1.86801 * 119.99966 * 7.15546 * 7 5 4 10 10 H 1.48505 * 109.47459 * 88.79657 * 9 7 5 11 11 H 1.48503 * 109.47604 * 208.79774 * 9 7 5 12 12 H 1.48501 * 109.47399 * 328.79778 * 9 7 5 13 13 C 1.34778 * 119.99894 * 103.04213 * 4 3 2 14 14 O 1.21298 * 120.00141 * 176.31683 * 13 4 3 15 15 C 1.50703 * 120.00044 * 356.32625 * 13 4 3 16 16 C 1.53001 * 109.54467 * 68.36521 * 15 13 4 17 17 C 1.50704 * 109.46918 * 68.30242 * 16 15 13 18 18 C 1.38239 * 119.97465 * 81.14833 * 17 16 15 19 19 C 1.38201 * 120.02801 * 180.02562 * 18 17 16 20 20 C 1.38460 * 119.97283 * 0.22711 * 19 18 17 21 21 F 1.35095 * 120.02726 * 179.72836 * 20 19 18 22 22 C 1.38461 * 119.94796 * 359.49766 * 20 19 18 23 23 C 1.38202 * 119.96980 * 0.52717 * 22 20 19 24 24 C 1.53175 * 109.54485 * 188.54463 * 15 13 4 25 25 C 1.53105 * 109.15738 * 63.06040 * 24 15 13 26 26 O 1.42902 * 109.48720 * 57.47836 * 25 24 15 27 27 C 1.42906 * 114.09285 * 298.88903 * 26 25 24 28 28 C 1.53090 * 109.41702 * 61.15926 * 27 26 25 29 29 H 4.40641 * 5.51441 * 179.97438 * 4 1 2 30 30 H 1.09003 * 109.46968 * 5.36391 * 3 2 1 31 31 H 1.08999 * 109.46852 * 245.36563 * 3 2 1 32 32 H 0.97005 * 120.00205 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47222 * 308.30618 * 16 15 13 34 34 H 1.09000 * 109.47375 * 188.30055 * 16 15 13 35 35 H 1.08000 * 119.98968 * 359.97438 * 18 17 16 36 36 H 1.08001 * 120.01338 * 179.97438 * 19 18 17 37 37 H 1.08001 * 120.01493 * 180.25475 * 22 20 19 38 38 H 1.08008 * 119.98150 * 179.74996 * 23 22 20 39 39 H 1.08999 * 109.52507 * 182.88201 * 24 15 13 40 40 H 1.09001 * 109.52128 * 303.07157 * 24 15 13 41 41 H 1.08997 * 109.41110 * 297.49238 * 25 24 15 42 42 H 1.09003 * 109.49275 * 177.51205 * 25 24 15 43 43 H 1.08997 * 109.48013 * 301.16855 * 27 26 25 44 44 H 1.09002 * 109.48584 * 181.14389 * 27 26 25 45 45 H 1.08999 * 109.52300 * 182.48535 * 28 27 26 46 46 H 1.09001 * 109.57604 * 62.32495 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.8003 -1.1263 5 6 3.1100 0.2830 -2.3957 6 1 2.1970 -0.1379 -2.7901 7 6 4.2604 0.2999 -3.1747 8 7 4.2054 -0.0649 -4.4359 9 14 5.8854 0.8414 -2.4291 10 1 6.5732 -0.3330 -1.8350 11 1 6.7425 1.4340 -3.4871 12 1 5.6324 1.8536 -1.3724 13 6 3.6064 2.0447 -0.9146 14 8 4.0720 2.6815 -1.8360 15 6 3.5563 2.6448 0.4668 16 6 4.5270 1.8988 1.3845 17 6 5.9433 2.1837 0.9554 18 6 6.5616 3.3560 1.3485 19 6 7.8602 3.6185 0.9552 20 6 8.5403 2.7091 0.1631 21 9 9.8078 2.9672 -0.2266 22 6 7.9221 1.5326 -0.2253 23 6 6.6232 1.2725 0.1689 24 6 3.9503 4.1235 0.3978 25 6 2.9272 4.8766 -0.4567 26 8 1.6222 4.7036 0.0991 27 6 1.1825 3.3446 0.1436 28 6 2.1341 2.5304 1.0240 29 1 -1.0501 -0.0003 0.0001 30 1 3.0098 -1.0224 -0.0961 31 1 3.0091 0.4292 0.9341 32 1 5.0085 -0.0527 -4.9798 33 1 4.3366 0.8275 1.3208 34 1 4.3847 2.2327 2.4123 35 1 6.0294 4.0673 1.9626 36 1 8.3428 4.5346 1.2621 37 1 8.4530 0.8206 -0.8397 38 1 6.1394 0.3568 -0.1374 39 1 3.9636 4.5443 1.4032 40 1 4.9397 4.2162 -0.0501 41 1 2.9445 4.4833 -1.4731 42 1 3.1776 5.9374 -0.4733 43 1 1.1768 2.9312 -0.8649 44 1 0.1759 3.3016 0.5597 45 1 1.8258 1.4849 1.0236 46 1 2.1098 2.9170 2.0428 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293550423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:27 Heat of formation + Delta-G solvation = 24.030726 kcal Electronic energy + Delta-G solvation = -33188.646750 eV Core-core repulsion = 28962.400442 eV Total energy + Delta-G solvation = -4226.246307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.77397 -41.19821 -38.86878 -37.78716 -35.69418 -34.74861 -32.76953 -31.70232 -31.29280 -31.09337 -30.43054 -27.46383 -26.81577 -25.07070 -23.56226 -23.21009 -22.85514 -21.20221 -21.01424 -19.11666 -18.24433 -17.72371 -16.73290 -16.25541 -16.18414 -15.95657 -15.91546 -15.59923 -15.43454 -14.96894 -14.71334 -14.58259 -14.14985 -14.06631 -13.70656 -13.63273 -13.27964 -13.20689 -12.84041 -12.68260 -12.56685 -12.23846 -12.06218 -11.74042 -11.65552 -11.53821 -11.38838 -11.02775 -10.90054 -10.69688 -10.22194 -10.18009 -10.07792 -9.94639 -9.72847 -9.67183 -9.18343 -8.85316 -8.58336 -8.56667 -8.00111 -7.41933 -6.19736 -4.17199 1.24750 1.33907 3.03290 3.14350 3.16838 3.38515 3.46346 3.67071 3.74299 4.21231 4.36274 4.37096 4.44336 4.62867 4.72411 4.80859 4.91653 4.98509 5.04930 5.11762 5.18753 5.28364 5.32045 5.35502 5.51533 5.54625 5.59966 5.68402 5.79459 5.89315 5.92864 5.94611 5.99211 6.01629 6.07465 6.19051 6.19840 6.23092 6.26880 6.33125 6.35294 6.38004 6.48224 6.63265 7.00708 7.53644 7.75108 7.95307 7.99259 8.66861 8.79102 9.31864 9.65669 10.80985 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010811 B = 0.006485 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.280666 B = 4316.586563 C = 5614.143368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.173 4.173 3 C 0.181 3.819 4 N -0.462 5.462 5 C -0.343 4.343 6 H 0.090 0.910 7 C 0.081 3.919 8 N -0.875 5.875 9 Si 0.869 3.131 10 H -0.303 1.303 11 H -0.297 1.297 12 H -0.177 1.177 13 C 0.478 3.522 14 O -0.524 6.524 15 C -0.074 4.074 16 C -0.079 4.079 17 C -0.098 4.098 18 C -0.074 4.074 19 C -0.168 4.168 20 C 0.103 3.897 21 F -0.144 7.144 22 C -0.178 4.178 23 C -0.056 4.056 24 C -0.126 4.126 25 C 0.053 3.947 26 O -0.390 6.390 27 C 0.065 3.935 28 C -0.168 4.168 29 H 0.212 0.788 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.271 0.729 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 4.101 15.725 16.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.174 4.174 3 C 0.058 3.942 4 N -0.184 5.184 5 C -0.469 4.469 6 H 0.108 0.892 7 C -0.126 4.126 8 N -0.510 5.510 9 Si 0.702 3.298 10 H -0.234 1.234 11 H -0.224 1.224 12 H -0.103 1.103 13 C 0.267 3.733 14 O -0.403 6.403 15 C -0.078 4.078 16 C -0.116 4.116 17 C -0.098 4.098 18 C -0.092 4.092 19 C -0.187 4.187 20 C 0.084 3.916 21 F -0.123 7.123 22 C -0.197 4.197 23 C -0.074 4.074 24 C -0.164 4.164 25 C -0.024 4.024 26 O -0.309 6.309 27 C -0.012 4.012 28 C -0.205 4.205 29 H 0.229 0.771 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.121 0.879 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.922 4.562 15.058 15.761 hybrid contribution 1.025 -0.235 -0.395 1.124 sum 1.947 4.328 14.664 15.412 Atomic orbital electron populations 1.24765 0.95760 1.02068 1.01064 1.23626 0.95024 0.99080 0.99672 1.19341 0.83984 0.98492 0.92377 1.43482 1.57532 1.10913 1.06495 1.18760 0.98044 1.42415 0.87684 0.89224 1.25539 0.99576 0.92636 0.94859 1.69680 1.30056 1.44754 1.06494 0.88173 0.81071 0.78685 0.81850 1.23363 1.22360 1.10292 1.19950 0.82512 0.81824 0.89020 1.90479 1.45019 1.60426 1.44409 1.20829 0.95379 0.96671 0.94918 1.20936 0.90212 1.01325 0.99107 1.19672 0.95865 0.94877 0.99400 1.20856 0.93383 0.96137 0.98863 1.20974 0.96014 1.00119 1.01578 1.17625 0.79776 0.95547 0.98627 1.91468 1.37084 1.94227 1.89512 1.21024 0.96820 0.97586 1.04242 1.20938 0.92967 0.99844 0.93633 1.22122 1.00939 0.92965 1.00394 1.22739 0.81763 0.99870 0.98004 1.87819 1.33200 1.26025 1.83855 1.22459 0.96910 0.82152 0.99644 1.22879 0.93925 1.03822 0.99889 0.77132 0.88963 0.87956 0.91904 0.89537 0.89728 0.85011 0.85036 0.85120 0.85139 0.91478 0.89591 0.90760 0.89710 0.92499 0.89424 0.87883 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.13 19.25 29.55 0.57 -2.56 16 2 C -0.17 -2.80 10.86 -37.12 -0.40 -3.20 16 3 C 0.18 3.01 4.84 -6.83 -0.03 2.98 16 4 N -0.46 -9.86 2.07 -117.94 -0.24 -10.11 16 5 C -0.34 -9.17 9.50 -14.94 -0.14 -9.31 16 6 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 7 C 0.08 2.31 5.15 -17.47 -0.09 2.22 16 8 N -0.87 -26.45 13.96 55.50 0.77 -25.68 16 9 Si 0.87 21.52 19.28 -169.99 -3.28 18.25 16 10 H -0.30 -7.09 6.57 56.52 0.37 -6.72 16 11 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 12 H -0.18 -3.94 1.68 56.52 0.09 -3.85 16 13 C 0.48 9.81 2.42 -10.98 -0.03 9.78 16 14 O -0.52 -12.80 9.78 5.54 0.05 -12.74 16 15 C -0.07 -1.16 0.28 -155.48 -0.04 -1.20 16 16 C -0.08 -1.03 4.14 -27.88 -0.12 -1.15 16 17 C -0.10 -1.44 3.90 -104.62 -0.41 -1.85 16 18 C -0.07 -0.96 7.45 -39.59 -0.29 -1.26 16 19 C -0.17 -2.26 10.03 -39.51 -0.40 -2.66 16 20 C 0.10 1.63 7.30 -39.42 -0.29 1.34 16 21 F -0.14 -2.28 17.27 2.25 0.04 -2.24 16 22 C -0.18 -3.01 8.12 -39.51 -0.32 -3.33 16 23 C -0.06 -0.95 5.42 -39.59 -0.21 -1.16 16 24 C -0.13 -1.91 3.23 -26.59 -0.09 -1.99 16 25 C 0.05 0.87 6.56 37.21 0.24 1.12 16 26 O -0.39 -6.55 10.77 -35.23 -0.38 -6.93 16 27 C 0.07 1.03 6.54 37.20 0.24 1.28 16 28 C -0.17 -2.35 4.33 -26.59 -0.12 -2.47 16 29 H 0.21 2.23 7.80 -54.08 -0.42 1.81 16 30 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.10 1.38 2.82 -51.93 -0.15 1.24 16 32 H 0.27 7.82 8.31 -40.82 -0.34 7.48 16 33 H 0.09 1.09 5.06 -51.93 -0.26 0.82 16 34 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 35 H 0.13 1.35 7.16 -52.49 -0.38 0.97 16 36 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.13 2.18 7.73 -52.49 -0.41 1.77 16 38 H 0.13 2.34 5.24 -52.48 -0.28 2.06 16 39 H 0.07 0.84 7.68 -51.93 -0.40 0.44 16 40 H 0.09 1.41 5.79 -51.93 -0.30 1.11 16 41 H 0.07 1.49 6.13 -51.93 -0.32 1.17 16 42 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.06 1.09 7.38 -51.93 -0.38 0.70 16 44 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.10 1.42 2.42 -51.93 -0.13 1.29 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 338.12 15.07 5.10 5.10 Total: -1.00 -32.65 338.12 -5.70 -38.36 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.84 Total: 9.42 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.92 Total: -13.42 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.53 Total: -35.79 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.33 Total: -19.67 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -3.28 Total: 18.25 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.65 -5.70 -38.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293550423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.387 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds