Wall clock time and date at job start Wed Apr 1 2020 04:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47053 * 125.36601 * 3 2 1 5 5 C 1.37097 * 120.00597 * 283.04799 * 4 3 2 6 6 H 1.07999 * 119.99955 * 51.82577 * 5 4 3 7 7 C 1.38943 * 120.00301 * 231.83310 * 5 4 3 8 8 N 1.31407 * 120.00300 * 187.15469 * 7 5 4 9 9 Si 1.86801 * 119.99966 * 7.15546 * 7 5 4 10 10 H 1.48505 * 109.47459 * 88.79657 * 9 7 5 11 11 H 1.48503 * 109.47604 * 208.79774 * 9 7 5 12 12 H 1.48501 * 109.47399 * 328.79778 * 9 7 5 13 13 C 1.34778 * 119.99894 * 103.04213 * 4 3 2 14 14 O 1.21298 * 120.00141 * 176.31683 * 13 4 3 15 15 C 1.50703 * 120.00044 * 356.32625 * 13 4 3 16 16 C 1.53001 * 109.54467 * 68.36521 * 15 13 4 17 17 C 1.50704 * 109.46918 * 68.30242 * 16 15 13 18 18 C 1.38239 * 119.97465 * 81.14833 * 17 16 15 19 19 C 1.38201 * 120.02801 * 180.02562 * 18 17 16 20 20 C 1.38460 * 119.97283 * 0.22711 * 19 18 17 21 21 F 1.35095 * 120.02726 * 179.72836 * 20 19 18 22 22 C 1.38461 * 119.94796 * 359.49766 * 20 19 18 23 23 C 1.38202 * 119.96980 * 0.52717 * 22 20 19 24 24 C 1.53175 * 109.54485 * 188.54463 * 15 13 4 25 25 C 1.53105 * 109.15738 * 63.06040 * 24 15 13 26 26 O 1.42902 * 109.48720 * 57.47836 * 25 24 15 27 27 C 1.42906 * 114.09285 * 298.88903 * 26 25 24 28 28 C 1.53090 * 109.41702 * 61.15926 * 27 26 25 29 29 H 4.40641 * 5.51441 * 179.97438 * 4 1 2 30 30 H 1.09003 * 109.46968 * 5.36391 * 3 2 1 31 31 H 1.08999 * 109.46852 * 245.36563 * 3 2 1 32 32 H 0.97005 * 120.00205 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47222 * 308.30618 * 16 15 13 34 34 H 1.09000 * 109.47375 * 188.30055 * 16 15 13 35 35 H 1.08000 * 119.98968 * 359.97438 * 18 17 16 36 36 H 1.08001 * 120.01338 * 179.97438 * 19 18 17 37 37 H 1.08001 * 120.01493 * 180.25475 * 22 20 19 38 38 H 1.08008 * 119.98150 * 179.74996 * 23 22 20 39 39 H 1.08999 * 109.52507 * 182.88201 * 24 15 13 40 40 H 1.09001 * 109.52128 * 303.07157 * 24 15 13 41 41 H 1.08997 * 109.41110 * 297.49238 * 25 24 15 42 42 H 1.09003 * 109.49275 * 177.51205 * 25 24 15 43 43 H 1.08997 * 109.48013 * 301.16855 * 27 26 25 44 44 H 1.09002 * 109.48584 * 181.14389 * 27 26 25 45 45 H 1.08999 * 109.52300 * 182.48535 * 28 27 26 46 46 H 1.09001 * 109.57604 * 62.32495 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.8003 -1.1263 5 6 3.1100 0.2830 -2.3957 6 1 2.1970 -0.1379 -2.7901 7 6 4.2604 0.2999 -3.1747 8 7 4.2054 -0.0649 -4.4359 9 14 5.8854 0.8414 -2.4291 10 1 6.5732 -0.3330 -1.8350 11 1 6.7425 1.4340 -3.4871 12 1 5.6324 1.8536 -1.3724 13 6 3.6064 2.0447 -0.9146 14 8 4.0720 2.6815 -1.8360 15 6 3.5563 2.6448 0.4668 16 6 4.5270 1.8988 1.3845 17 6 5.9433 2.1837 0.9554 18 6 6.5616 3.3560 1.3485 19 6 7.8602 3.6185 0.9552 20 6 8.5403 2.7091 0.1631 21 9 9.8078 2.9672 -0.2266 22 6 7.9221 1.5326 -0.2253 23 6 6.6232 1.2725 0.1689 24 6 3.9503 4.1235 0.3978 25 6 2.9272 4.8766 -0.4567 26 8 1.6222 4.7036 0.0991 27 6 1.1825 3.3446 0.1436 28 6 2.1341 2.5304 1.0240 29 1 -1.0501 -0.0003 0.0001 30 1 3.0098 -1.0224 -0.0961 31 1 3.0091 0.4292 0.9341 32 1 5.0085 -0.0527 -4.9798 33 1 4.3366 0.8275 1.3208 34 1 4.3847 2.2327 2.4123 35 1 6.0294 4.0673 1.9626 36 1 8.3428 4.5346 1.2621 37 1 8.4530 0.8206 -0.8397 38 1 6.1394 0.3568 -0.1374 39 1 3.9636 4.5443 1.4032 40 1 4.9397 4.2162 -0.0501 41 1 2.9445 4.4833 -1.4731 42 1 3.1776 5.9374 -0.4733 43 1 1.1768 2.9312 -0.8649 44 1 0.1759 3.3016 0.5597 45 1 1.8258 1.4849 1.0236 46 1 2.1098 2.9170 2.0428 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293550423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:27 Heat of formation + Delta-G solvation = 1.373334 kcal Electronic energy + Delta-G solvation = -33189.629248 eV Core-core repulsion = 28962.400442 eV Total energy + Delta-G solvation = -4227.228805 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.96196 -42.56520 -40.06525 -39.21783 -37.27892 -36.08540 -34.52561 -33.31004 -32.45419 -32.28980 -31.62507 -28.83721 -28.12904 -26.79349 -24.75819 -24.52594 -24.01422 -22.60866 -22.28403 -20.73538 -19.61088 -18.93628 -18.31598 -17.64193 -17.48993 -17.39242 -17.22777 -16.87478 -16.65264 -16.23715 -16.12671 -16.06815 -15.56619 -15.55456 -15.03245 -14.91635 -14.51578 -14.48564 -14.34213 -14.11238 -13.98831 -13.76875 -13.37547 -13.07088 -12.85263 -12.78921 -12.65619 -12.50947 -12.42766 -12.07791 -11.93027 -11.49331 -11.37528 -11.27027 -11.15822 -10.93301 -10.75514 -10.43615 -10.16776 -9.88049 -9.56314 -9.07698 -8.37078 -6.35893 0.09928 0.18633 1.13217 1.34173 1.50049 1.78208 1.97415 2.07069 2.37924 2.54626 2.82488 3.00668 3.05206 3.24104 3.48534 3.57882 3.69237 3.73677 3.84985 3.89173 4.02208 4.14167 4.15617 4.23199 4.26931 4.39192 4.43795 4.59981 4.66609 4.68760 4.75907 4.78370 4.84502 4.88942 4.93214 5.03891 5.10612 5.11941 5.14769 5.20023 5.22268 5.24208 5.28269 5.52346 5.64219 5.87946 5.91078 6.28916 6.72749 6.82211 6.88528 7.29369 7.85071 8.64081 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010811 B = 0.006485 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.280666 B = 4316.586563 C = 5614.143368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.219 4.219 3 C 0.179 3.821 4 N -0.475 5.475 5 C -0.325 4.325 6 H 0.050 0.950 7 C 0.025 3.975 8 N -0.930 5.930 9 Si 0.902 3.098 10 H -0.294 1.294 11 H -0.337 1.337 12 H -0.127 1.127 13 C 0.478 3.522 14 O -0.570 6.570 15 C -0.069 4.069 16 C -0.080 4.080 17 C -0.098 4.098 18 C -0.063 4.063 19 C -0.155 4.155 20 C 0.084 3.916 21 F -0.150 7.150 22 C -0.200 4.200 23 C -0.088 4.088 24 C -0.123 4.123 25 C 0.050 3.950 26 O -0.392 6.392 27 C 0.063 3.937 28 C -0.163 4.163 29 H 0.246 0.754 30 H 0.090 0.910 31 H 0.144 0.856 32 H 0.265 0.735 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.177 0.823 36 H 0.164 0.836 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.074 0.926 41 H 0.026 0.974 42 H 0.107 0.893 43 H 0.009 0.991 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.313 6.551 21.676 22.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.220 4.220 3 C 0.058 3.942 4 N -0.197 5.197 5 C -0.453 4.453 6 H 0.067 0.933 7 C -0.176 4.176 8 N -0.569 5.569 9 Si 0.735 3.265 10 H -0.223 1.223 11 H -0.267 1.267 12 H -0.051 1.051 13 C 0.269 3.731 14 O -0.452 6.452 15 C -0.072 4.072 16 C -0.116 4.116 17 C -0.098 4.098 18 C -0.080 4.080 19 C -0.174 4.174 20 C 0.065 3.935 21 F -0.129 7.129 22 C -0.219 4.219 23 C -0.106 4.106 24 C -0.161 4.161 25 C -0.026 4.026 26 O -0.311 6.311 27 C -0.014 4.014 28 C -0.199 4.199 29 H 0.263 0.737 30 H 0.108 0.892 31 H 0.161 0.839 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.159 0.841 35 H 0.195 0.805 36 H 0.182 0.818 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.092 0.908 41 H 0.044 0.956 42 H 0.125 0.875 43 H 0.028 0.972 44 H 0.131 0.869 45 H 0.124 0.876 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.066 6.990 21.075 22.204 hybrid contribution 1.148 -0.945 -2.250 2.697 sum 1.081 6.045 18.825 19.801 Atomic orbital electron populations 1.25628 0.96610 0.99833 0.98712 1.23672 0.95423 1.01155 1.01798 1.19529 0.84725 0.98037 0.91878 1.43598 1.58158 1.12173 1.05781 1.18508 0.95906 1.40589 0.90289 0.93268 1.26311 1.02861 0.93279 0.95116 1.69818 1.30409 1.48481 1.08189 0.87947 0.76856 0.80031 0.81652 1.22318 1.26739 1.05122 1.21004 0.79967 0.80937 0.91185 1.90477 1.46727 1.61375 1.46645 1.20870 0.97710 0.97159 0.91467 1.21101 0.87984 1.01467 1.01098 1.19955 0.96648 0.94948 0.98257 1.21342 0.92953 0.95732 0.97991 1.21418 0.96200 1.00228 0.99522 1.17892 0.79925 0.95956 0.99738 1.91450 1.37486 1.94217 1.89748 1.21071 0.97398 0.98412 1.04989 1.20954 0.93379 1.00363 0.95913 1.22178 0.99404 0.92066 1.02436 1.22729 0.82551 1.01319 0.96035 1.87821 1.33355 1.26475 1.83476 1.22520 0.99070 0.81994 0.97783 1.22907 0.91651 1.03946 1.01420 0.73748 0.89246 0.83909 0.92582 0.89204 0.84108 0.80525 0.81808 0.86621 0.86998 0.86579 0.90772 0.95580 0.87486 0.97233 0.86923 0.87585 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.93 19.25 74.32 1.43 -3.50 16 2 C -0.22 -6.72 10.86 31.13 0.34 -6.38 16 3 C 0.18 5.75 4.84 84.58 0.41 6.16 16 4 N -0.47 -20.49 2.07 -645.42 -1.34 -21.83 16 5 C -0.33 -18.42 9.50 84.04 0.80 -17.63 16 6 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 7 C 0.03 1.54 5.15 84.93 0.44 1.98 16 8 N -0.93 -60.95 13.96 21.66 0.30 -60.64 16 9 Si 0.90 47.03 19.28 68.60 1.32 48.36 16 10 H -0.29 -14.38 6.57 99.48 0.65 -13.72 16 11 H -0.34 -19.65 7.11 99.48 0.71 -18.94 16 12 H -0.13 -5.70 1.68 99.48 0.17 -5.54 16 13 C 0.48 19.27 2.42 87.66 0.21 19.48 16 14 O -0.57 -28.44 9.78 -3.08 -0.03 -28.47 16 15 C -0.07 -1.84 0.28 -52.81 -0.01 -1.85 16 16 C -0.08 -1.61 4.14 29.85 0.12 -1.49 16 17 C -0.10 -2.44 3.90 -19.86 -0.08 -2.52 16 18 C -0.06 -1.24 7.45 22.26 0.17 -1.07 16 19 C -0.16 -3.47 10.03 22.31 0.22 -3.25 16 20 C 0.08 2.50 7.30 22.38 0.16 2.67 16 21 F -0.15 -4.63 17.27 44.97 0.78 -3.85 16 22 C -0.20 -6.74 8.12 22.31 0.18 -6.56 16 23 C -0.09 -2.86 5.42 22.26 0.12 -2.74 16 24 C -0.12 -3.07 3.23 30.69 0.10 -2.97 16 25 C 0.05 1.53 6.56 72.02 0.47 2.00 16 26 O -0.39 -11.81 10.77 -148.98 -1.60 -13.42 16 27 C 0.06 1.80 6.54 72.01 0.47 2.27 16 28 C -0.16 -3.67 4.33 30.68 0.13 -3.53 16 29 H 0.25 4.23 7.80 -4.41 -0.03 4.20 16 30 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.14 3.31 2.82 -2.39 -0.01 3.30 16 32 H 0.27 16.75 8.31 -92.70 -0.77 15.98 16 33 H 0.09 1.80 5.06 -2.39 -0.01 1.79 16 34 H 0.14 1.45 8.12 -2.39 -0.02 1.43 16 35 H 0.18 1.97 7.16 -2.91 -0.02 1.95 16 36 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 37 H 0.12 4.07 7.73 -2.91 -0.02 4.05 16 38 H 0.11 4.00 5.24 -2.91 -0.02 3.98 16 39 H 0.12 1.85 7.68 -2.39 -0.02 1.83 16 40 H 0.07 2.07 5.79 -2.39 -0.01 2.06 16 41 H 0.03 1.05 6.13 -2.39 -0.01 1.03 16 42 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 43 H 0.01 0.35 7.38 -2.39 -0.02 0.33 16 44 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.11 2.41 2.42 -2.39 -0.01 2.40 16 46 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -82.64 338.12 5.55 -77.09 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.43 Total: 21.71 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 5.69 Total: -18.95 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -1.04 Total: -82.47 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -1.63 Total: -41.88 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.78 Total: -3.85 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.32 Total: 48.36 kcal Total: -82.64 5.55 -77.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293550423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.463 kcal (2) G-P(sol) polarization free energy of solvation -82.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds