Wall clock time and date at job start Wed Apr 1 2020 03:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50695 * 119.99906 * 2 1 4 4 N 1.46498 * 109.47432 * 125.53192 * 3 2 1 5 5 C 1.46504 * 119.99725 * 275.26016 * 4 3 2 6 6 C 1.50700 * 109.47137 * 269.99441 * 5 4 3 7 7 H 1.08001 * 120.00031 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00037 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00198 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00262 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47457 * 59.99523 * 10 8 6 12 12 H 1.48491 * 109.47611 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46862 * 300.00019 * 10 8 6 14 14 C 1.34770 * 119.99965 * 95.25905 * 4 3 2 15 15 O 1.21281 * 120.00024 * 174.57966 * 14 4 3 16 16 C 1.50697 * 120.00120 * 354.58051 * 14 4 3 17 17 H 1.09002 * 109.47139 * 6.47498 * 16 14 4 18 18 O 1.42904 * 109.47051 * 126.47368 * 16 14 4 19 19 C 1.52998 * 109.47099 * 246.47146 * 16 14 4 20 20 H 1.09004 * 109.47551 * 295.35862 * 19 16 14 21 21 O 1.42907 * 109.46948 * 55.35799 * 19 16 14 22 22 C 1.50701 * 109.47173 * 175.35234 * 19 16 14 23 23 N 1.30102 * 124.95286 * 304.98204 * 22 19 16 24 24 C 1.35784 * 109.64533 * 179.97438 * 23 22 19 25 25 C 1.39740 * 133.59939 * 179.97438 * 24 23 22 26 26 C 1.36607 * 119.88529 * 180.02562 * 25 24 23 27 27 C 1.38781 * 120.66759 * 359.97438 * 26 25 24 28 28 C 1.37851 * 120.44944 * 0.03934 * 27 26 25 29 29 C 1.38832 * 119.69535 * 359.97438 * 28 27 26 30 30 N 1.36041 * 124.94728 * 125.00258 * 22 19 16 31 31 H 0.97002 * 126.35026 * 0.02562 * 30 22 19 32 32 H 1.08006 * 119.99801 * 180.02562 * 1 2 3 33 33 H 1.07991 * 120.00166 * 0.02562 * 1 2 3 34 34 H 1.07998 * 120.00072 * 179.97438 * 2 1 3 35 35 H 1.09009 * 109.47010 * 5.52767 * 3 2 1 36 36 H 1.08998 * 109.46973 * 245.53357 * 3 2 1 37 37 H 1.09000 * 109.47240 * 29.99719 * 5 4 3 38 38 H 1.08998 * 109.47139 * 149.99942 * 5 4 3 39 39 H 0.96994 * 120.00173 * 179.97438 * 9 8 6 40 40 H 0.96698 * 114.00018 * 60.00489 * 18 16 14 41 41 H 0.96698 * 113.99841 * 65.54952 * 21 19 16 42 42 H 1.07997 * 120.06003 * 0.30367 * 25 24 23 43 43 H 1.08001 * 119.66463 * 179.97438 * 26 25 24 44 44 H 1.07994 * 119.77081 * 180.02562 * 27 26 25 45 45 H 1.08009 * 120.14883 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0028 1.3267 1.1240 5 6 2.5467 1.7454 2.4518 6 6 2.7282 3.2342 2.5990 7 1 3.1415 3.8109 1.7847 8 6 2.3666 3.8600 3.7730 9 7 1.8628 3.1578 4.7644 10 14 2.5908 5.7055 3.9553 11 1 1.7950 6.4060 2.9155 12 1 2.1298 6.1297 5.3016 13 1 4.0268 6.0480 3.7937 14 6 4.2865 0.9615 0.9365 15 8 5.0868 1.0725 1.8410 16 6 4.7274 0.4151 -0.3969 17 1 3.9085 0.4965 -1.1117 18 8 5.8493 1.1629 -0.8707 19 6 5.1235 -1.0544 -0.2402 20 1 5.9950 -1.1285 0.4104 21 8 4.0364 -1.7820 0.3351 22 6 5.4551 -1.6322 -1.5920 23 7 4.6641 -1.6141 -2.6247 24 6 5.2735 -2.2179 -3.6772 25 6 4.8904 -2.4712 -4.9970 26 6 5.7469 -3.1178 -5.8422 27 6 6.9985 -3.5276 -5.4044 28 6 7.3975 -3.2886 -4.1068 29 6 6.5404 -2.6330 -3.2334 30 7 6.6252 -2.2490 -1.9100 31 1 7.3794 -2.3922 -1.3171 32 1 -0.5400 -0.9354 0.0004 33 1 -0.5400 0.9352 -0.0004 34 1 1.8500 -0.9353 0.0004 35 1 1.3592 2.1312 0.0990 36 1 2.6137 1.4069 -0.9354 37 1 1.4926 1.4944 2.5697 38 1 3.1303 1.2311 3.2153 39 1 1.6088 3.5980 5.5905 40 1 6.6168 1.1353 -0.2831 41 1 3.2531 -1.8309 -0.2299 42 1 3.9206 -2.1523 -5.3494 43 1 5.4470 -3.3122 -6.8614 44 1 7.6643 -4.0373 -6.0851 45 1 8.3725 -3.6100 -3.7711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293724626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:49 Heat of formation + Delta-G solvation = -27.229438 kcal Electronic energy + Delta-G solvation = -30443.287700 eV Core-core repulsion = 26234.738547 eV Total energy + Delta-G solvation = -4208.549153 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.46541 -39.92172 -37.92792 -36.89588 -36.26738 -35.54900 -33.42804 -33.17609 -32.11219 -30.69698 -30.23752 -28.94985 -27.52599 -25.67227 -24.95891 -22.79088 -22.56794 -22.25105 -21.09941 -20.02330 -19.27497 -18.25239 -17.68054 -17.58348 -16.98297 -16.54800 -16.41761 -16.02786 -15.39636 -15.12015 -14.76846 -14.58707 -14.48635 -14.35054 -14.24672 -14.13535 -13.36754 -13.22095 -12.96571 -12.81206 -12.31357 -12.15446 -12.07416 -11.84531 -11.72536 -11.56717 -11.47424 -11.26848 -11.05542 -10.98222 -10.89560 -10.59334 -10.38033 -10.18896 -10.16212 -9.66266 -9.16904 -8.89963 -8.65970 -8.42641 -8.40556 -7.75897 -6.03727 -4.08358 0.63853 1.24800 2.37304 2.46461 2.51064 3.13441 3.33017 3.37068 3.40660 3.58940 3.63030 3.83993 3.98706 4.26006 4.44202 4.49512 4.61435 4.68532 4.74743 4.79559 4.90565 5.07045 5.13774 5.16862 5.25974 5.30700 5.39909 5.41489 5.52868 5.68082 5.77321 6.03838 6.10152 6.20206 6.23050 6.23977 6.58168 6.77333 6.89578 6.98087 7.03706 7.22401 7.41626 7.44945 7.48959 7.57272 7.91772 8.22687 8.29935 8.81223 8.98636 9.56255 11.04400 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019537 B = 0.002678 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.817003 B =10452.155814 C =11006.190675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.168 4.168 3 C 0.128 3.872 4 N -0.578 5.578 5 C 0.248 3.752 6 C -0.527 4.527 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.492 3.508 15 O -0.535 6.535 16 C 0.062 3.938 17 H 0.131 0.869 18 O -0.533 6.533 19 C 0.171 3.829 20 H 0.125 0.875 21 O -0.528 6.528 22 C 0.265 3.735 23 N -0.477 5.477 24 C 0.050 3.950 25 C -0.061 4.061 26 C -0.130 4.130 27 C -0.102 4.102 28 C -0.112 4.112 29 C 0.050 3.950 30 N -0.587 5.587 31 H 0.424 0.576 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.035 0.965 38 H 0.043 0.957 39 H 0.264 0.736 40 H 0.382 0.618 41 H 0.383 0.617 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.958 -14.670 -19.544 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.188 4.188 3 C 0.004 3.996 4 N -0.309 5.309 5 C 0.129 3.871 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.277 3.723 15 O -0.412 6.412 16 C -0.002 4.002 17 H 0.148 0.852 18 O -0.338 6.338 19 C 0.108 3.892 20 H 0.142 0.858 21 O -0.334 6.334 22 C -0.003 4.003 23 N -0.199 5.199 24 C -0.069 4.069 25 C -0.081 4.081 26 C -0.151 4.151 27 C -0.122 4.122 28 C -0.133 4.133 29 C -0.061 4.061 30 N -0.199 5.199 31 H 0.263 0.737 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.230 0.770 41 H 0.235 0.765 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.443 -14.160 -18.901 24.480 hybrid contribution 1.244 0.507 0.502 1.434 sum 7.687 -13.654 -18.399 24.167 Atomic orbital electron populations 1.23829 0.95778 1.01910 0.99931 1.23374 0.96424 0.98473 1.00487 1.20747 0.93160 0.95818 0.89837 1.48203 1.07642 1.63018 1.12059 1.19310 0.95404 0.95178 0.77163 1.21385 1.42189 0.92667 1.00302 0.92462 1.24923 0.95058 0.98529 0.95530 1.69922 1.42712 1.35860 1.04845 0.86563 0.78653 0.85113 0.77117 1.20223 1.21201 1.20197 1.20602 0.83415 0.79252 0.89021 1.90686 1.51636 1.55218 1.43696 1.22856 0.91538 0.89008 0.96800 0.85153 1.86648 1.24471 1.72975 1.49739 1.20909 0.92568 0.89900 0.85811 0.85751 1.86771 1.25165 1.75355 1.46095 1.24169 0.83022 0.95649 0.97504 1.70289 1.30398 1.21199 0.97975 1.19070 0.91534 1.01608 0.94687 1.20065 1.00193 0.97961 0.89832 1.20662 0.94196 1.00309 0.99898 1.20893 0.96636 1.00007 0.94642 1.19971 0.98838 1.01529 0.92938 1.18917 0.98550 1.03405 0.85187 1.42990 1.17234 1.49307 1.10343 0.73689 0.88597 0.88179 0.87916 0.89113 0.90265 0.94653 0.93914 0.92667 0.76957 0.76535 0.85170 0.85304 0.85272 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 14.32 29.01 0.42 -1.85 16 2 C -0.17 -2.37 9.84 -36.03 -0.35 -2.72 16 3 C 0.13 2.10 5.54 -5.20 -0.03 2.07 16 4 N -0.58 -12.08 2.44 -176.44 -0.43 -12.51 16 5 C 0.25 6.46 5.14 -5.19 -0.03 6.43 16 6 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 7 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 10 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 14 C 0.49 9.97 6.22 -10.99 -0.07 9.90 16 15 O -0.53 -12.87 16.48 -4.61 -0.08 -12.95 16 16 C 0.06 0.94 2.80 -27.88 -0.08 0.87 16 17 H 0.13 1.92 5.25 -51.93 -0.27 1.65 16 18 O -0.53 -8.01 13.07 -45.39 -0.59 -8.60 16 19 C 0.17 2.23 3.29 -27.88 -0.09 2.13 16 20 H 0.12 1.49 8.14 -51.93 -0.42 1.06 16 21 O -0.53 -7.32 12.61 -35.23 -0.44 -7.77 16 22 C 0.26 3.27 6.68 -154.83 -1.03 2.24 16 23 N -0.48 -6.49 11.13 -8.23 -0.09 -6.58 16 24 C 0.05 0.62 7.23 -84.70 -0.61 0.01 16 25 C -0.06 -0.62 10.05 -39.61 -0.40 -1.02 16 26 C -0.13 -1.03 9.96 -39.97 -0.40 -1.43 16 27 C -0.10 -0.76 10.03 -39.52 -0.40 -1.16 16 28 C -0.11 -0.96 10.07 -39.50 -0.40 -1.35 16 29 C 0.05 0.55 7.31 -83.99 -0.61 -0.07 16 30 N -0.59 -5.96 6.23 -8.00 -0.05 -6.01 16 31 H 0.42 2.95 8.96 -40.82 -0.37 2.59 16 32 H 0.10 1.06 8.06 -52.48 -0.42 0.63 16 33 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 34 H 0.10 1.32 5.20 -52.49 -0.27 1.05 16 35 H 0.09 1.54 7.76 -51.92 -0.40 1.14 16 36 H 0.08 1.15 5.78 -51.93 -0.30 0.85 16 37 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.04 1.26 7.50 -51.93 -0.39 0.87 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.38 4.74 8.85 45.56 0.40 5.15 16 41 H 0.38 4.57 6.46 45.56 0.29 4.86 16 42 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 43 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 45 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -36.19 385.68 -8.88 -45.07 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -4.22 Total: 11.97 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -4.50 Total: 0.46 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.16 Total: -50.95 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -1.11 Total: -29.31 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.19 -8.88 -45.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293724626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.843 kcal (2) G-P(sol) polarization free energy of solvation -36.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds