Wall clock time and date at job start Wed Apr 1 2020 03:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50695 * 119.99906 * 2 1 4 4 N 1.46498 * 109.47432 * 125.53192 * 3 2 1 5 5 C 1.46504 * 119.99725 * 275.26016 * 4 3 2 6 6 C 1.50700 * 109.47137 * 269.99441 * 5 4 3 7 7 H 1.08001 * 120.00031 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00037 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00198 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00262 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47457 * 59.99523 * 10 8 6 12 12 H 1.48491 * 109.47611 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46862 * 300.00019 * 10 8 6 14 14 C 1.34770 * 119.99965 * 95.25905 * 4 3 2 15 15 O 1.21281 * 120.00024 * 174.57966 * 14 4 3 16 16 C 1.50697 * 120.00120 * 354.58051 * 14 4 3 17 17 H 1.09002 * 109.47139 * 6.47498 * 16 14 4 18 18 O 1.42904 * 109.47051 * 126.47368 * 16 14 4 19 19 C 1.52998 * 109.47099 * 246.47146 * 16 14 4 20 20 H 1.09004 * 109.47551 * 295.35862 * 19 16 14 21 21 O 1.42907 * 109.46948 * 55.35799 * 19 16 14 22 22 C 1.50701 * 109.47173 * 175.35234 * 19 16 14 23 23 N 1.30102 * 124.95286 * 304.98204 * 22 19 16 24 24 C 1.35784 * 109.64533 * 179.97438 * 23 22 19 25 25 C 1.39740 * 133.59939 * 179.97438 * 24 23 22 26 26 C 1.36607 * 119.88529 * 180.02562 * 25 24 23 27 27 C 1.38781 * 120.66759 * 359.97438 * 26 25 24 28 28 C 1.37851 * 120.44944 * 0.03934 * 27 26 25 29 29 C 1.38832 * 119.69535 * 359.97438 * 28 27 26 30 30 N 1.36041 * 124.94728 * 125.00258 * 22 19 16 31 31 H 0.97002 * 126.35026 * 0.02562 * 30 22 19 32 32 H 1.08006 * 119.99801 * 180.02562 * 1 2 3 33 33 H 1.07991 * 120.00166 * 0.02562 * 1 2 3 34 34 H 1.07998 * 120.00072 * 179.97438 * 2 1 3 35 35 H 1.09009 * 109.47010 * 5.52767 * 3 2 1 36 36 H 1.08998 * 109.46973 * 245.53357 * 3 2 1 37 37 H 1.09000 * 109.47240 * 29.99719 * 5 4 3 38 38 H 1.08998 * 109.47139 * 149.99942 * 5 4 3 39 39 H 0.96994 * 120.00173 * 179.97438 * 9 8 6 40 40 H 0.96698 * 114.00018 * 60.00489 * 18 16 14 41 41 H 0.96698 * 113.99841 * 65.54952 * 21 19 16 42 42 H 1.07997 * 120.06003 * 0.30367 * 25 24 23 43 43 H 1.08001 * 119.66463 * 179.97438 * 26 25 24 44 44 H 1.07994 * 119.77081 * 180.02562 * 27 26 25 45 45 H 1.08009 * 120.14883 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0028 1.3267 1.1240 5 6 2.5467 1.7454 2.4518 6 6 2.7282 3.2342 2.5990 7 1 3.1415 3.8109 1.7847 8 6 2.3666 3.8600 3.7730 9 7 1.8628 3.1578 4.7644 10 14 2.5908 5.7055 3.9553 11 1 1.7950 6.4060 2.9155 12 1 2.1298 6.1297 5.3016 13 1 4.0268 6.0480 3.7937 14 6 4.2865 0.9615 0.9365 15 8 5.0868 1.0725 1.8410 16 6 4.7274 0.4151 -0.3969 17 1 3.9085 0.4965 -1.1117 18 8 5.8493 1.1629 -0.8707 19 6 5.1235 -1.0544 -0.2402 20 1 5.9950 -1.1285 0.4104 21 8 4.0364 -1.7820 0.3351 22 6 5.4551 -1.6322 -1.5920 23 7 4.6641 -1.6141 -2.6247 24 6 5.2735 -2.2179 -3.6772 25 6 4.8904 -2.4712 -4.9970 26 6 5.7469 -3.1178 -5.8422 27 6 6.9985 -3.5276 -5.4044 28 6 7.3975 -3.2886 -4.1068 29 6 6.5404 -2.6330 -3.2334 30 7 6.6252 -2.2490 -1.9100 31 1 7.3794 -2.3922 -1.3171 32 1 -0.5400 -0.9354 0.0004 33 1 -0.5400 0.9352 -0.0004 34 1 1.8500 -0.9353 0.0004 35 1 1.3592 2.1312 0.0990 36 1 2.6137 1.4069 -0.9354 37 1 1.4926 1.4944 2.5697 38 1 3.1303 1.2311 3.2153 39 1 1.6088 3.5980 5.5905 40 1 6.6168 1.1353 -0.2831 41 1 3.2531 -1.8309 -0.2299 42 1 3.9206 -2.1523 -5.3494 43 1 5.4470 -3.3122 -6.8614 44 1 7.6643 -4.0373 -6.0851 45 1 8.3725 -3.6100 -3.7711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293724626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:48 Heat of formation + Delta-G solvation = -55.414124 kcal Electronic energy + Delta-G solvation = -30444.509880 eV Core-core repulsion = 26234.738547 eV Total energy + Delta-G solvation = -4209.771333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.27393 -41.37117 -38.97651 -37.88334 -37.55666 -36.97964 -35.10032 -34.22013 -33.71343 -31.71650 -30.94926 -30.32343 -29.00971 -27.02404 -26.44952 -24.38432 -23.36753 -23.17170 -22.01717 -21.26353 -20.62272 -19.22911 -18.87795 -18.60497 -18.52325 -18.05399 -17.82798 -17.15655 -16.71275 -16.22327 -16.02949 -15.95500 -15.82183 -15.38256 -15.23260 -14.84757 -14.71423 -14.56233 -14.37190 -14.19060 -14.05648 -13.33518 -13.10998 -12.98781 -12.89529 -12.84116 -12.78917 -12.59854 -12.54577 -12.46472 -12.23813 -12.20220 -11.79022 -11.73070 -11.45380 -11.06088 -10.64716 -10.49994 -10.30584 -9.54122 -9.39336 -9.14812 -8.22741 -6.37120 -0.09265 0.56142 1.28511 1.35843 1.40049 1.43149 1.48223 1.67218 1.76219 2.27213 2.41342 2.74325 2.90055 2.96027 3.06936 3.31579 3.39963 3.48456 3.56687 3.69097 4.06220 4.09952 4.18659 4.19286 4.26241 4.40092 4.43924 4.50868 4.51299 4.83361 4.87759 4.98973 5.06150 5.13038 5.20227 5.42451 5.47492 5.54205 5.59665 5.68998 5.73576 5.92559 5.94894 6.04883 6.22674 6.28296 6.35293 6.59698 6.72223 6.73983 7.18803 7.35822 8.84360 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019537 B = 0.002678 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.817003 B =10452.155814 C =11006.190675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.185 4.185 3 C 0.126 3.874 4 N -0.584 5.584 5 C 0.266 3.734 6 C -0.544 4.544 7 H 0.051 0.949 8 C 0.010 3.990 9 N -0.926 5.926 10 Si 0.965 3.035 11 H -0.262 1.262 12 H -0.277 1.277 13 H -0.278 1.278 14 C 0.486 3.514 15 O -0.582 6.582 16 C 0.083 3.917 17 H 0.138 0.862 18 O -0.538 6.538 19 C 0.181 3.819 20 H 0.133 0.867 21 O -0.540 6.540 22 C 0.253 3.747 23 N -0.498 5.498 24 C 0.011 3.989 25 C -0.082 4.082 26 C -0.124 4.124 27 C -0.095 4.095 28 C -0.118 4.118 29 C 0.038 3.962 30 N -0.577 5.577 31 H 0.437 0.563 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.025 0.975 38 H -0.001 1.001 39 H 0.268 0.732 40 H 0.393 0.607 41 H 0.390 0.610 42 H 0.134 0.866 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.708 -15.376 -22.132 28.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.204 4.204 3 C 0.004 3.996 4 N -0.314 5.314 5 C 0.145 3.855 6 C -0.582 4.582 7 H 0.069 0.931 8 C -0.189 4.189 9 N -0.565 5.565 10 Si 0.789 3.211 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.204 1.204 14 C 0.273 3.727 15 O -0.462 6.462 16 C 0.019 3.981 17 H 0.155 0.845 18 O -0.344 6.344 19 C 0.118 3.882 20 H 0.151 0.849 21 O -0.347 6.347 22 C -0.015 4.015 23 N -0.220 5.220 24 C -0.107 4.107 25 C -0.101 4.101 26 C -0.144 4.144 27 C -0.114 4.114 28 C -0.139 4.139 29 C -0.073 4.073 30 N -0.190 5.190 31 H 0.278 0.722 32 H 0.138 0.862 33 H 0.118 0.882 34 H 0.132 0.868 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.043 0.957 38 H 0.017 0.983 39 H 0.076 0.924 40 H 0.243 0.757 41 H 0.243 0.757 42 H 0.152 0.848 43 H 0.176 0.824 44 H 0.181 0.819 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.191 -14.884 -21.530 27.143 hybrid contribution 1.014 0.645 1.194 1.695 sum 8.204 -14.238 -20.335 26.145 Atomic orbital electron populations 1.24073 0.95399 1.03103 0.97483 1.23274 0.96871 0.97647 1.02624 1.20942 0.92680 0.97083 0.88901 1.48173 1.08955 1.62820 1.11422 1.18725 0.93894 0.93804 0.79055 1.21641 1.42332 0.93793 1.00456 0.93115 1.25814 0.94523 1.03470 0.95094 1.70038 1.43306 1.37859 1.05342 0.85509 0.78490 0.79275 0.77795 1.18618 1.20205 1.20358 1.21514 0.82567 0.78200 0.90458 1.90647 1.52807 1.57008 1.45774 1.22648 0.91868 0.90233 0.93341 0.84510 1.86624 1.24754 1.73120 1.49939 1.20719 0.92556 0.88178 0.86729 0.84917 1.86751 1.25799 1.75339 1.46856 1.23736 0.84017 0.96946 0.96803 1.70192 1.31324 1.21853 0.98679 1.19509 0.92672 1.03036 0.95473 1.20326 1.01160 0.99071 0.89551 1.21068 0.93916 0.98576 1.00802 1.21382 0.96727 0.98676 0.94645 1.20377 0.99550 1.00922 0.93048 1.19258 0.98672 1.03883 0.85449 1.42878 1.16973 1.48639 1.10512 0.72184 0.86212 0.88160 0.86762 0.89997 0.88261 0.95663 0.98289 0.92356 0.75662 0.75732 0.84839 0.82426 0.81866 0.83473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 14.32 67.78 0.97 -3.03 16 2 C -0.19 -5.14 9.84 25.64 0.25 -4.89 16 3 C 0.13 4.18 5.54 85.63 0.47 4.65 16 4 N -0.58 -25.26 2.44 -830.51 -2.03 -27.28 16 5 C 0.27 14.53 5.14 85.63 0.44 14.97 16 6 C -0.54 -31.78 9.39 25.60 0.24 -31.54 16 7 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 8 C 0.01 0.60 5.46 84.65 0.46 1.06 16 9 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 10 Si 0.97 45.43 29.54 68.60 2.03 47.45 16 11 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 14 C 0.49 20.30 6.22 87.66 0.54 20.85 16 15 O -0.58 -29.25 16.48 6.68 0.11 -29.14 16 16 C 0.08 2.55 2.80 29.85 0.08 2.63 16 17 H 0.14 4.01 5.25 -2.39 -0.01 4.00 16 18 O -0.54 -16.04 13.07 -139.26 -1.82 -17.86 16 19 C 0.18 4.72 3.29 29.85 0.10 4.82 16 20 H 0.13 3.19 8.14 -2.38 -0.02 3.17 16 21 O -0.54 -15.12 12.61 -148.98 -1.88 -17.00 16 22 C 0.25 6.16 6.68 137.92 0.92 7.08 16 23 N -0.50 -13.42 11.13 -179.96 -2.00 -15.42 16 24 C 0.01 0.28 7.23 39.45 0.29 0.56 16 25 C -0.08 -1.57 10.05 22.25 0.22 -1.34 16 26 C -0.12 -1.61 9.96 22.02 0.22 -1.39 16 27 C -0.09 -1.07 10.03 22.31 0.22 -0.85 16 28 C -0.12 -1.69 10.07 22.32 0.22 -1.47 16 29 C 0.04 0.78 7.31 38.86 0.28 1.06 16 30 N -0.58 -11.17 6.23 -179.23 -1.12 -12.29 16 31 H 0.44 5.60 8.96 -92.71 -0.83 4.76 16 32 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.10 2.45 7.84 -2.92 -0.02 2.43 16 34 H 0.11 2.89 5.20 -2.91 -0.02 2.88 16 35 H 0.08 2.83 7.76 -2.38 -0.02 2.82 16 36 H 0.10 2.86 5.78 -2.39 -0.01 2.84 16 37 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 38 H 0.00 -0.06 7.50 -2.39 -0.02 -0.08 16 39 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.39 9.76 8.85 -74.06 -0.66 9.10 16 41 H 0.39 9.33 6.46 -74.06 -0.48 8.85 16 42 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 43 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 44 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 45 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -80.89 385.68 -1.37 -82.26 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: -0.89 Total: 32.10 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 5.95 Total: 13.18 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -4.86 Total: -110.99 kcal Atomic # 8 Polarization: -60.41 SS G_CDS: -3.59 Total: -64.00 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -80.89 -1.37 -82.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293724626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.850 kcal (2) G-P(sol) polarization free energy of solvation -80.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds