Wall clock time and date at job start Wed Apr 1 2020 03:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00411 * 2 1 4 4 N 1.46501 * 109.46880 * 124.99922 * 3 2 1 5 5 C 1.46501 * 120.00041 * 275.66363 * 4 3 2 6 6 C 1.50696 * 109.47051 * 270.00184 * 5 4 3 7 7 H 1.07999 * 120.00501 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99552 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99998 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00371 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47173 * 90.00118 * 10 8 6 12 12 H 1.48502 * 109.47383 * 210.00067 * 10 8 6 13 13 H 1.48498 * 109.46835 * 330.00153 * 10 8 6 14 14 C 1.34784 * 119.99857 * 95.66914 * 4 3 2 15 15 O 1.21281 * 119.99877 * 175.15250 * 14 4 3 16 16 C 1.50696 * 119.99961 * 355.14806 * 14 4 3 17 17 H 1.09001 * 109.47249 * 334.06254 * 16 14 4 18 18 O 1.42896 * 109.46991 * 214.06486 * 16 14 4 19 19 C 1.52999 * 109.47131 * 94.06725 * 16 14 4 20 20 H 1.08993 * 109.47045 * 55.73303 * 19 16 14 21 21 O 1.42900 * 109.47068 * 295.73734 * 19 16 14 22 22 C 1.50694 * 109.47323 * 175.73955 * 19 16 14 23 23 N 1.30120 * 124.94859 * 305.02408 * 22 19 16 24 24 C 1.35784 * 109.64091 * 179.69900 * 23 22 19 25 25 C 1.39742 * 133.59241 * 179.48491 * 24 23 22 26 26 C 1.36600 * 119.88543 * 180.48424 * 25 24 23 27 27 C 1.38778 * 120.66880 * 0.25068 * 26 25 24 28 28 C 1.37857 * 120.45251 * 0.04327 * 27 26 25 29 29 C 1.38830 * 119.68810 * 359.97438 * 28 27 26 30 30 N 1.36044 * 124.95582 * 124.99617 * 22 19 16 31 31 H 0.97001 * 126.34186 * 0.06079 * 30 22 19 32 32 H 1.07996 * 120.00686 * 180.02562 * 1 2 3 33 33 H 1.08011 * 119.99712 * 359.97438 * 1 2 3 34 34 H 1.08011 * 119.99712 * 180.02562 * 2 1 3 35 35 H 1.09003 * 109.47039 * 5.00339 * 3 2 1 36 36 H 1.09002 * 109.47317 * 244.99734 * 3 2 1 37 37 H 1.08997 * 109.46890 * 30.00632 * 5 4 3 38 38 H 1.09003 * 109.46840 * 149.99917 * 5 4 3 39 39 H 0.96999 * 120.00276 * 180.02562 * 9 8 6 40 40 H 0.96696 * 114.00338 * 299.99784 * 18 16 14 41 41 H 0.96710 * 114.00207 * 291.29736 * 21 19 16 42 42 H 1.07995 * 120.05558 * 0.75521 * 25 24 23 43 43 H 1.08000 * 119.66613 * 180.27781 * 26 25 24 44 44 H 1.07997 * 119.77412 * 180.02562 * 27 26 25 45 45 H 1.07997 * 120.15663 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3317 1.1315 5 6 2.5250 1.7480 2.4555 6 6 2.6973 3.2377 2.6039 7 1 3.1138 3.8167 1.7929 8 6 2.3230 3.8616 3.7751 9 7 2.4738 5.1617 3.9049 10 14 1.6031 2.8603 5.1781 11 1 2.6979 2.3954 6.0671 12 1 0.6592 3.7036 5.9548 13 1 0.8798 1.6859 4.6278 14 6 4.2809 0.9733 0.9542 15 8 5.0712 1.0789 1.8682 16 6 4.7382 0.4414 -0.3796 17 1 3.8931 -0.0095 -0.8999 18 8 5.7533 -0.5437 -0.1768 19 6 5.3016 1.5888 -1.2203 20 1 6.0972 2.0879 -0.6671 21 8 4.2609 2.5252 -1.5067 22 6 5.8541 1.0416 -2.5111 23 7 6.7476 0.0998 -2.5996 24 6 7.0144 -0.1548 -3.9064 25 6 7.8773 -1.0393 -4.5590 26 6 7.9299 -1.0561 -5.9239 27 6 7.1373 -0.1983 -6.6735 28 6 6.2832 0.6868 -6.0510 29 6 6.2165 0.7184 -4.6647 30 7 5.4911 1.4598 -3.7537 31 1 4.8431 2.1512 -3.9610 32 1 -0.5401 -0.9352 0.0004 33 1 -0.5400 0.9354 0.0004 34 1 1.8500 -0.9354 -0.0004 35 1 1.3586 2.1316 0.0896 36 1 2.6214 1.4025 -0.9314 37 1 1.4713 1.4913 2.5651 38 1 3.1052 1.2368 3.2237 39 1 2.2108 5.6006 4.7289 40 1 6.5372 -0.2120 0.2819 41 1 3.5833 2.1883 -2.1088 42 1 8.4982 -1.7114 -3.9854 43 1 8.5947 -1.7443 -6.4248 44 1 7.1901 -0.2242 -7.7519 45 1 5.6688 1.3525 -6.6390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293724628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:53 Heat of formation + Delta-G solvation = -20.129859 kcal Electronic energy + Delta-G solvation = -30549.410884 eV Core-core repulsion = 26341.169592 eV Total energy + Delta-G solvation = -4208.241292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.45616 -40.02785 -38.01834 -36.90647 -36.44772 -35.49270 -33.36265 -33.20917 -32.18024 -30.64229 -30.21183 -29.22658 -27.92235 -25.74835 -25.03744 -22.73712 -22.33587 -22.05073 -21.14199 -20.14295 -19.16226 -18.50598 -17.73277 -17.34114 -17.15763 -16.89214 -16.61713 -15.95007 -15.61924 -15.04830 -14.81701 -14.71509 -14.50174 -14.34182 -14.14057 -13.72267 -13.55493 -13.32975 -13.09785 -12.88296 -12.39955 -12.29470 -12.08759 -11.92442 -11.78347 -11.68499 -11.63405 -11.40321 -11.25808 -10.96287 -10.92605 -10.56120 -10.30920 -10.17178 -10.08097 -9.57567 -9.32730 -9.00247 -8.62588 -8.59148 -8.35404 -7.83425 -6.08624 -4.07233 0.67264 1.26675 2.27061 2.40714 2.50043 3.09244 3.28558 3.34474 3.36821 3.49322 3.64726 3.71820 3.93126 4.28457 4.39258 4.54040 4.61659 4.71759 4.77672 4.81013 4.84549 5.08306 5.12949 5.14856 5.19697 5.23702 5.27159 5.39108 5.47209 5.54973 5.79874 5.86836 6.05003 6.10917 6.25328 6.27420 6.60219 6.63200 6.64721 6.76534 6.88663 6.91302 7.06039 7.24489 7.59431 7.64490 7.67484 8.10244 8.44899 8.76373 8.97149 9.51375 11.04604 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.002754 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.343827 B =10163.612478 C =10412.930761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.179 4.179 3 C 0.135 3.865 4 N -0.575 5.575 5 C 0.217 3.783 6 C -0.525 4.525 7 H 0.078 0.922 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.490 3.510 15 O -0.529 6.529 16 C 0.074 3.926 17 H 0.115 0.885 18 O -0.516 6.516 19 C 0.165 3.835 20 H 0.141 0.859 21 O -0.526 6.526 22 C 0.253 3.747 23 N -0.452 5.452 24 C 0.046 3.954 25 C -0.060 4.060 26 C -0.132 4.132 27 C -0.102 4.102 28 C -0.112 4.112 29 C 0.049 3.951 30 N -0.594 5.594 31 H 0.423 0.577 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.387 0.613 41 H 0.373 0.627 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 -11.093 -22.084 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.198 4.198 3 C 0.012 3.988 4 N -0.306 5.306 5 C 0.097 3.903 6 C -0.564 4.564 7 H 0.096 0.904 8 C -0.130 4.130 9 N -0.535 5.535 10 Si 0.700 3.300 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.275 3.725 15 O -0.405 6.405 16 C 0.009 3.991 17 H 0.132 0.868 18 O -0.321 6.321 19 C 0.102 3.898 20 H 0.158 0.842 21 O -0.331 6.331 22 C -0.015 4.015 23 N -0.172 5.172 24 C -0.073 4.073 25 C -0.079 4.079 26 C -0.152 4.152 27 C -0.122 4.122 28 C -0.133 4.133 29 C -0.061 4.061 30 N -0.206 5.206 31 H 0.263 0.737 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.237 0.763 41 H 0.222 0.778 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.017 -11.330 -20.655 23.898 hybrid contribution -1.160 0.443 -0.090 1.245 sum 2.857 -10.887 -20.745 23.602 Atomic orbital electron populations 1.23873 0.95809 1.01964 0.99820 1.23512 0.96586 0.99124 1.00568 1.20739 0.93063 0.95492 0.89531 1.47820 1.07894 1.63691 1.11164 1.19691 0.94617 0.96659 0.79383 1.21308 1.42344 0.90409 1.02335 0.90396 1.24843 0.95301 0.94788 0.98023 1.69893 1.47958 1.08687 1.26987 0.86901 0.79575 0.80439 0.83089 1.19927 1.21077 1.19076 1.20808 0.83086 0.78743 0.89824 1.90706 1.52496 1.53943 1.43385 1.22459 0.92989 0.89871 0.93803 0.86764 1.86638 1.29621 1.35037 1.80802 1.21182 0.90966 0.90048 0.87592 0.84213 1.86955 1.36420 1.40413 1.69303 1.24110 0.95875 0.94310 0.87200 1.70467 1.14681 1.14074 1.17992 1.19195 0.99860 0.99107 0.89125 1.20070 0.96890 0.97082 0.93869 1.20655 1.00828 1.00461 0.93259 1.20888 0.95988 0.95532 0.99804 1.19962 1.01938 1.01702 0.89729 1.18907 0.97983 0.96955 0.92304 1.42928 1.37759 1.34496 1.05445 0.73708 0.88634 0.88081 0.87569 0.88889 0.90884 0.95090 0.94705 0.92594 0.76333 0.77829 0.85202 0.85366 0.85315 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 14.32 29.02 0.42 -1.63 16 2 C -0.18 -2.29 9.52 -36.02 -0.34 -2.64 16 3 C 0.14 1.97 5.21 -5.19 -0.03 1.94 16 4 N -0.57 -11.25 2.44 -176.43 -0.43 -11.68 16 5 C 0.22 5.21 4.21 -5.20 -0.02 5.18 16 6 C -0.53 -14.82 9.94 -34.44 -0.34 -15.16 16 7 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 10 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 14 C 0.49 9.53 6.59 -10.98 -0.07 9.46 16 15 O -0.53 -12.51 16.12 -11.56 -0.19 -12.70 16 16 C 0.07 1.07 2.61 -27.89 -0.07 0.99 16 17 H 0.11 1.45 6.26 -51.93 -0.33 1.12 16 18 O -0.52 -7.82 11.79 -52.34 -0.62 -8.44 16 19 C 0.16 2.11 3.28 -27.89 -0.09 2.02 16 20 H 0.14 1.98 8.14 -51.93 -0.42 1.55 16 21 O -0.53 -6.22 11.35 -35.23 -0.40 -6.62 16 22 C 0.25 3.10 7.09 -154.81 -1.10 2.00 16 23 N -0.45 -6.36 9.99 -8.23 -0.08 -6.44 16 24 C 0.05 0.59 7.23 -84.70 -0.61 -0.02 16 25 C -0.06 -0.63 10.05 -39.61 -0.40 -1.03 16 26 C -0.13 -1.07 9.96 -39.97 -0.40 -1.47 16 27 C -0.10 -0.77 10.03 -39.52 -0.40 -1.17 16 28 C -0.11 -0.96 10.07 -39.50 -0.40 -1.36 16 29 C 0.05 0.53 7.31 -83.99 -0.61 -0.08 16 30 N -0.59 -5.82 5.96 -8.00 -0.05 -5.87 16 31 H 0.42 2.85 8.26 -40.82 -0.34 2.52 16 32 H 0.10 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.10 1.14 7.84 -52.48 -0.41 0.72 16 34 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.09 1.43 7.76 -51.93 -0.40 1.03 16 36 H 0.07 0.83 3.26 -51.93 -0.17 0.66 16 37 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 38 H 0.03 0.90 6.92 -51.93 -0.36 0.54 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.39 5.43 8.64 45.56 0.39 5.82 16 41 H 0.37 2.77 6.86 45.56 0.31 3.09 16 42 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 44 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 378.51 15.07 5.70 5.70 Total: -1.00 -37.15 378.51 -8.74 -45.89 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -4.22 Total: 10.98 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -4.57 Total: -0.96 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.21 Total: -50.68 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -1.20 Total: -27.76 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.15 -8.74 -45.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293724628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.765 kcal (2) G-P(sol) polarization free energy of solvation -37.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds