Wall clock time and date at job start Wed Apr 1 2020 03:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 120.00411 * 2 1 4 4 N 1.46501 * 109.46880 * 124.99922 * 3 2 1 5 5 C 1.46501 * 120.00041 * 275.66363 * 4 3 2 6 6 C 1.50696 * 109.47051 * 270.00184 * 5 4 3 7 7 H 1.07999 * 120.00501 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99552 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99998 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00371 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47173 * 90.00118 * 10 8 6 12 12 H 1.48502 * 109.47383 * 210.00067 * 10 8 6 13 13 H 1.48498 * 109.46835 * 330.00153 * 10 8 6 14 14 C 1.34784 * 119.99857 * 95.66914 * 4 3 2 15 15 O 1.21281 * 119.99877 * 175.15250 * 14 4 3 16 16 C 1.50696 * 119.99961 * 355.14806 * 14 4 3 17 17 H 1.09001 * 109.47249 * 334.06254 * 16 14 4 18 18 O 1.42896 * 109.46991 * 214.06486 * 16 14 4 19 19 C 1.52999 * 109.47131 * 94.06725 * 16 14 4 20 20 H 1.08993 * 109.47045 * 55.73303 * 19 16 14 21 21 O 1.42900 * 109.47068 * 295.73734 * 19 16 14 22 22 C 1.50694 * 109.47323 * 175.73955 * 19 16 14 23 23 N 1.30120 * 124.94859 * 305.02408 * 22 19 16 24 24 C 1.35784 * 109.64091 * 179.69900 * 23 22 19 25 25 C 1.39742 * 133.59241 * 179.48491 * 24 23 22 26 26 C 1.36600 * 119.88543 * 180.48424 * 25 24 23 27 27 C 1.38778 * 120.66880 * 0.25068 * 26 25 24 28 28 C 1.37857 * 120.45251 * 0.04327 * 27 26 25 29 29 C 1.38830 * 119.68810 * 359.97438 * 28 27 26 30 30 N 1.36044 * 124.95582 * 124.99617 * 22 19 16 31 31 H 0.97001 * 126.34186 * 0.06079 * 30 22 19 32 32 H 1.07996 * 120.00686 * 180.02562 * 1 2 3 33 33 H 1.08011 * 119.99712 * 359.97438 * 1 2 3 34 34 H 1.08011 * 119.99712 * 180.02562 * 2 1 3 35 35 H 1.09003 * 109.47039 * 5.00339 * 3 2 1 36 36 H 1.09002 * 109.47317 * 244.99734 * 3 2 1 37 37 H 1.08997 * 109.46890 * 30.00632 * 5 4 3 38 38 H 1.09003 * 109.46840 * 149.99917 * 5 4 3 39 39 H 0.96999 * 120.00276 * 180.02562 * 9 8 6 40 40 H 0.96696 * 114.00338 * 299.99784 * 18 16 14 41 41 H 0.96710 * 114.00207 * 291.29736 * 21 19 16 42 42 H 1.07995 * 120.05558 * 0.75521 * 25 24 23 43 43 H 1.08000 * 119.66613 * 180.27781 * 26 25 24 44 44 H 1.07997 * 119.77412 * 180.02562 * 27 26 25 45 45 H 1.07997 * 120.15663 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3317 1.1315 5 6 2.5250 1.7480 2.4555 6 6 2.6973 3.2377 2.6039 7 1 3.1138 3.8167 1.7929 8 6 2.3230 3.8616 3.7751 9 7 2.4738 5.1617 3.9049 10 14 1.6031 2.8603 5.1781 11 1 2.6979 2.3954 6.0671 12 1 0.6592 3.7036 5.9548 13 1 0.8798 1.6859 4.6278 14 6 4.2809 0.9733 0.9542 15 8 5.0712 1.0789 1.8682 16 6 4.7382 0.4414 -0.3796 17 1 3.8931 -0.0095 -0.8999 18 8 5.7533 -0.5437 -0.1768 19 6 5.3016 1.5888 -1.2203 20 1 6.0972 2.0879 -0.6671 21 8 4.2609 2.5252 -1.5067 22 6 5.8541 1.0416 -2.5111 23 7 6.7476 0.0998 -2.5996 24 6 7.0144 -0.1548 -3.9064 25 6 7.8773 -1.0393 -4.5590 26 6 7.9299 -1.0561 -5.9239 27 6 7.1373 -0.1983 -6.6735 28 6 6.2832 0.6868 -6.0510 29 6 6.2165 0.7184 -4.6647 30 7 5.4911 1.4598 -3.7537 31 1 4.8431 2.1512 -3.9610 32 1 -0.5401 -0.9352 0.0004 33 1 -0.5400 0.9354 0.0004 34 1 1.8500 -0.9354 -0.0004 35 1 1.3586 2.1316 0.0896 36 1 2.6214 1.4025 -0.9314 37 1 1.4713 1.4913 2.5651 38 1 3.1052 1.2368 3.2237 39 1 2.2108 5.6006 4.7289 40 1 6.5372 -0.2120 0.2819 41 1 3.5833 2.1883 -2.1088 42 1 8.4982 -1.7114 -3.9854 43 1 8.5947 -1.7443 -6.4248 44 1 7.1901 -0.2242 -7.7519 45 1 5.6688 1.3525 -6.6390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293724628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:52 Heat of formation + Delta-G solvation = -49.160021 kcal Electronic energy + Delta-G solvation = -30550.669726 eV Core-core repulsion = 26341.169592 eV Total energy + Delta-G solvation = -4209.500134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.28184 -41.40440 -39.05974 -37.80968 -37.73553 -36.82013 -35.02844 -34.17661 -33.79026 -31.69384 -30.91921 -30.70912 -29.20109 -27.00041 -26.37460 -24.03804 -23.39063 -23.02117 -22.05784 -21.26910 -20.47046 -19.47679 -19.07369 -18.59756 -18.53585 -18.30000 -17.67346 -17.11635 -16.70309 -16.43768 -16.00369 -15.86087 -15.57434 -15.22245 -15.14936 -15.03333 -14.81660 -14.58270 -14.41682 -14.19992 -14.17328 -13.56400 -13.13198 -13.00345 -12.94345 -12.86426 -12.67736 -12.58945 -12.52616 -12.43567 -12.29937 -11.96324 -11.76235 -11.72073 -11.41225 -10.96895 -10.82038 -10.51597 -10.34554 -9.50163 -9.36591 -9.12130 -8.32135 -6.36323 -0.07196 0.56556 1.26126 1.32734 1.35934 1.36044 1.44071 1.67469 1.83302 2.25457 2.31133 2.59644 2.91590 2.95049 3.01978 3.38359 3.47111 3.53436 3.61872 3.69846 4.05541 4.11401 4.18433 4.20263 4.30866 4.32988 4.45494 4.49211 4.52103 4.76061 4.82963 4.87193 4.89408 5.05830 5.13512 5.42450 5.43638 5.48995 5.55640 5.60275 5.70257 5.87723 5.95693 6.16305 6.24137 6.34748 6.43334 6.59029 6.66395 6.83035 7.16187 7.30333 8.84583 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.002754 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.343827 B =10163.612478 C =10412.930761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.194 4.194 3 C 0.130 3.870 4 N -0.580 5.580 5 C 0.226 3.774 6 C -0.528 4.528 7 H 0.034 0.966 8 C 0.013 3.987 9 N -0.944 5.944 10 Si 0.942 3.058 11 H -0.278 1.278 12 H -0.275 1.275 13 H -0.239 1.239 14 C 0.482 3.518 15 O -0.582 6.582 16 C 0.092 3.908 17 H 0.139 0.861 18 O -0.521 6.521 19 C 0.180 3.820 20 H 0.119 0.881 21 O -0.536 6.536 22 C 0.245 3.755 23 N -0.483 5.483 24 C 0.006 3.994 25 C -0.083 4.083 26 C -0.124 4.124 27 C -0.095 4.095 28 C -0.116 4.116 29 C 0.040 3.960 30 N -0.579 5.579 31 H 0.437 0.563 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.049 0.951 38 H 0.015 0.985 39 H 0.267 0.733 40 H 0.390 0.610 41 H 0.393 0.607 42 H 0.129 0.871 43 H 0.157 0.843 44 H 0.164 0.836 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 -12.959 -24.837 28.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.213 4.213 3 C 0.009 3.991 4 N -0.310 5.310 5 C 0.104 3.896 6 C -0.566 4.566 7 H 0.052 0.948 8 C -0.185 4.185 9 N -0.584 5.584 10 Si 0.765 3.235 11 H -0.204 1.204 12 H -0.200 1.200 13 H -0.162 1.162 14 C 0.269 3.731 15 O -0.462 6.462 16 C 0.027 3.973 17 H 0.157 0.843 18 O -0.326 6.326 19 C 0.117 3.883 20 H 0.137 0.863 21 O -0.344 6.344 22 C -0.023 4.023 23 N -0.204 5.204 24 C -0.112 4.112 25 C -0.102 4.102 26 C -0.144 4.144 27 C -0.114 4.114 28 C -0.137 4.137 29 C -0.071 4.071 30 N -0.193 5.193 31 H 0.279 0.721 32 H 0.135 0.865 33 H 0.122 0.878 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.121 0.879 37 H 0.067 0.933 38 H 0.033 0.967 39 H 0.076 0.924 40 H 0.240 0.760 41 H 0.245 0.755 42 H 0.147 0.853 43 H 0.174 0.826 44 H 0.182 0.818 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.485 -13.206 -23.482 27.055 hybrid contribution -0.647 1.053 0.580 1.366 sum 1.837 -12.153 -22.902 25.992 Atomic orbital electron populations 1.24106 0.95370 1.03146 0.97165 1.23348 0.96983 0.98074 1.02915 1.21001 0.92642 0.96548 0.88930 1.47881 1.08951 1.63119 1.11002 1.19324 0.95163 0.93495 0.81640 1.21494 1.41475 0.92471 1.01177 0.94775 1.25785 0.95851 0.95871 1.01035 1.70043 1.49610 1.10713 1.28070 0.85807 0.78879 0.79650 0.79189 1.20413 1.20006 1.16235 1.21735 0.82471 0.77721 0.91138 1.90667 1.53846 1.56141 1.45573 1.22383 0.93517 0.90262 0.91095 0.84332 1.86616 1.29827 1.35460 1.80711 1.20732 0.90678 0.89096 0.87816 0.86322 1.86937 1.36879 1.40478 1.70058 1.23649 0.96419 0.94763 0.87467 1.70361 1.15493 1.15066 1.19469 1.19612 1.01659 1.00897 0.89020 1.20307 0.97335 0.97461 0.95147 1.21048 1.00608 1.00437 0.92316 1.21379 0.94445 0.94069 1.01552 1.20376 1.02324 1.02236 0.88764 1.19219 0.97853 0.96731 0.93263 1.42773 1.37658 1.34460 1.04437 0.72096 0.86503 0.87830 0.86996 0.89833 0.87912 0.93336 0.96676 0.92363 0.76031 0.75538 0.85300 0.82559 0.81825 0.83287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 14.32 67.79 0.97 -2.25 16 2 C -0.19 -4.54 9.52 25.65 0.24 -4.29 16 3 C 0.13 3.66 5.21 85.63 0.45 4.10 16 4 N -0.58 -22.87 2.44 -830.49 -2.03 -24.90 16 5 C 0.23 10.95 4.21 85.63 0.36 11.31 16 6 C -0.53 -30.76 9.94 25.60 0.25 -30.50 16 7 H 0.03 2.23 8.06 -2.91 -0.02 2.20 16 8 C 0.01 0.74 5.47 84.65 0.46 1.20 16 9 N -0.94 -59.62 13.96 21.45 0.30 -59.32 16 10 Si 0.94 44.55 27.47 68.60 1.88 46.44 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 14 C 0.48 19.24 6.59 87.65 0.58 19.82 16 15 O -0.58 -28.91 16.12 13.33 0.21 -28.70 16 16 C 0.09 2.67 2.61 29.85 0.08 2.75 16 17 H 0.14 3.31 6.26 -2.39 -0.01 3.30 16 18 O -0.52 -16.13 11.79 -132.62 -1.56 -17.70 16 19 C 0.18 4.70 3.28 29.85 0.10 4.79 16 20 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 21 O -0.54 -12.52 11.35 -148.98 -1.69 -14.22 16 22 C 0.25 5.99 7.09 137.91 0.98 6.96 16 23 N -0.48 -13.81 9.99 -179.95 -1.80 -15.60 16 24 C 0.01 0.16 7.23 39.45 0.29 0.45 16 25 C -0.08 -1.69 10.05 22.25 0.22 -1.47 16 26 C -0.12 -1.69 9.96 22.02 0.22 -1.47 16 27 C -0.10 -1.08 10.03 22.31 0.22 -0.86 16 28 C -0.12 -1.63 10.07 22.32 0.22 -1.40 16 29 C 0.04 0.81 7.31 38.86 0.28 1.09 16 30 N -0.58 -10.68 5.96 -179.22 -1.07 -11.75 16 31 H 0.44 5.12 8.26 -92.71 -0.77 4.36 16 32 H 0.12 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.10 2.04 7.84 -2.90 -0.02 2.01 16 34 H 0.11 2.53 8.06 -2.90 -0.02 2.51 16 35 H 0.08 2.51 7.76 -2.39 -0.02 2.49 16 36 H 0.10 2.16 3.26 -2.39 -0.01 2.16 16 37 H 0.05 2.18 7.13 -2.39 -0.02 2.16 16 38 H 0.02 0.80 6.92 -2.39 -0.02 0.78 16 39 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 40 H 0.39 11.61 8.64 -74.06 -0.64 10.97 16 41 H 0.39 5.21 6.86 -74.05 -0.51 4.70 16 42 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 43 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 44 H 0.16 0.73 8.06 -2.91 -0.02 0.70 16 45 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -85.16 378.51 -0.72 -85.88 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: -0.90 Total: 29.63 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: 5.93 Total: 10.23 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -4.59 Total: -111.57 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: -3.04 Total: -60.62 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.44 kcal Total: -85.16 -0.72 -85.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293724628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.722 kcal (2) G-P(sol) polarization free energy of solvation -85.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds