Wall clock time and date at job start Wed Apr 1 2020 04:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47226 * 2 1 4 4 N 1.46494 * 109.47021 * 179.97438 * 3 2 1 5 5 C 1.37104 * 120.00148 * 269.99327 * 4 3 2 6 6 H 1.07993 * 120.00077 * 145.31086 * 5 4 3 7 7 C 1.38955 * 119.99639 * 325.31113 * 5 4 3 8 8 N 1.31408 * 120.00092 * 337.26718 * 7 5 4 9 9 Si 1.86798 * 119.99836 * 157.27090 * 7 5 4 10 10 H 1.48502 * 109.47242 * 59.99480 * 9 7 5 11 11 H 1.48501 * 109.46919 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46925 * 299.99692 * 9 7 5 13 13 C 1.34778 * 120.00043 * 89.99839 * 4 3 2 14 14 O 1.21283 * 120.00287 * 4.88134 * 13 4 3 15 15 C 1.50700 * 119.99741 * 184.88273 * 13 4 3 16 16 C 1.53005 * 109.46950 * 177.72590 * 15 13 4 17 17 N 1.46508 * 109.46985 * 180.02562 * 16 15 13 18 18 C 1.35610 * 119.82655 * 269.72573 * 17 16 15 19 19 O 1.34768 * 118.46107 * 0.02562 * 18 17 16 20 20 N 1.31334 * 123.07909 * 179.73493 * 18 17 16 21 21 C 1.34213 * 121.73669 * 0.55171 * 20 18 17 22 22 O 1.21935 * 120.83872 * 179.71194 * 21 20 18 23 23 C 1.47482 * 118.31985 * 359.73124 * 21 20 18 24 24 C 1.39276 * 121.92997 * 179.97438 * 23 21 20 25 25 C 1.37822 * 119.48472 * 180.02562 * 24 23 21 26 26 C 1.38740 * 120.46386 * 359.97438 * 25 24 23 27 27 C 1.37926 * 120.66102 * 359.97438 * 26 25 24 28 28 C 1.38279 * 119.82452 * 90.00123 * 17 16 15 29 29 H 1.09004 * 109.46907 * 300.00635 * 1 2 3 30 30 H 1.08994 * 109.46701 * 60.00418 * 1 2 3 31 31 H 1.08995 * 109.47436 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47186 * 239.99509 * 2 1 3 33 33 H 1.09007 * 109.46803 * 119.99234 * 2 1 3 34 34 H 1.08995 * 109.47439 * 59.99664 * 3 2 1 35 35 H 1.09007 * 109.46604 * 299.99356 * 3 2 1 36 36 H 0.96993 * 120.00281 * 185.01405 * 8 7 5 37 37 H 1.08994 * 109.47633 * 297.72834 * 15 13 4 38 38 H 1.08999 * 109.47213 * 57.72824 * 15 13 4 39 39 H 1.08993 * 109.47321 * 299.99773 * 16 15 13 40 40 H 1.08999 * 109.46971 * 60.00086 * 16 15 13 41 41 H 0.96699 * 117.00079 * 89.99746 * 19 18 17 42 42 H 1.08005 * 120.25650 * 0.02562 * 24 23 21 43 43 H 1.08001 * 119.76929 * 180.02562 * 25 24 23 44 44 H 1.07997 * 119.66867 * 180.02562 * 26 25 24 45 45 H 1.08010 * 120.15578 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1901 1.4427 1.1882 6 1 5.1260 0.9105 1.2719 7 6 3.6800 2.1279 2.2842 8 7 2.8277 3.1120 2.1054 9 14 4.2061 1.6502 4.0118 10 1 5.6769 1.8077 4.1428 11 1 3.5249 2.5279 4.9971 12 1 3.8350 0.2354 4.2687 13 6 4.1794 1.4422 -1.1663 14 8 3.5768 1.5314 -2.2150 15 6 5.6823 1.3311 -1.1679 16 6 6.1896 1.2975 -2.6110 17 7 7.6507 1.1888 -2.6126 18 6 8.4105 2.3120 -2.6156 19 8 7.7891 3.5079 -2.6165 20 7 9.7237 2.2891 -2.6121 21 6 10.4096 1.1355 -2.6162 22 8 11.6290 1.1334 -2.6181 23 6 9.6513 -0.1294 -2.6188 24 6 10.2864 -1.3689 -2.6237 25 6 9.5279 -2.5197 -2.6265 26 6 8.1423 -2.4489 -2.6240 27 6 7.5004 -1.2281 -2.6181 28 6 8.2475 -0.0585 -2.6169 29 1 -0.3633 0.5140 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6768 1.9562 -0.8901 36 1 2.5277 3.6375 2.8635 37 1 6.1108 2.1903 -0.6521 38 1 5.9795 0.4153 -0.6570 39 1 5.7612 0.4382 -3.1269 40 1 5.8924 2.2133 -3.1220 41 1 7.5880 3.8988 -1.7552 42 1 11.3648 -1.4279 -2.6252 43 1 10.0156 -3.4833 -2.6298 44 1 7.5606 -3.3588 -2.6258 45 1 6.4213 -1.1826 -2.6166 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299039093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:31 Heat of formation + Delta-G solvation = -49.038557 kcal Electronic energy + Delta-G solvation = -30529.107819 eV Core-core repulsion = 26319.612951 eV Total energy + Delta-G solvation = -4209.494867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76290 -39.11944 -38.79380 -38.15133 -36.53623 -35.45169 -34.38035 -32.99854 -31.64026 -31.18813 -31.02782 -29.77231 -26.26484 -25.22617 -24.44883 -24.23697 -23.66703 -21.52179 -20.75071 -19.76633 -19.32538 -19.21421 -18.02481 -17.52175 -16.75578 -16.22537 -15.95172 -15.45021 -15.22641 -14.96308 -14.77905 -14.61064 -14.52652 -14.17816 -14.10833 -13.88066 -13.75035 -13.15846 -12.88183 -12.63067 -12.47857 -12.30677 -12.26664 -11.73424 -11.64489 -11.52950 -11.45052 -11.29361 -11.09538 -11.03747 -10.90775 -10.80300 -10.53706 -10.45190 -9.98890 -9.90690 -9.34552 -9.30475 -9.28223 -8.73087 -8.22186 -7.72895 -6.59588 -4.27502 0.45649 0.71397 1.41882 1.97885 2.96188 3.00353 3.07654 3.08989 3.28853 3.60442 3.87445 3.92059 4.14493 4.33705 4.46168 4.59819 4.67974 4.77556 4.94663 5.01186 5.08381 5.11082 5.26217 5.51951 5.61211 5.63881 5.64836 5.67856 5.81279 5.87609 5.99125 6.05583 6.13904 6.19619 6.23913 6.34873 6.37680 6.41500 6.53144 6.61092 6.65869 6.95021 7.15943 7.18480 7.32727 7.71032 7.71878 8.03464 8.13160 8.83566 9.25016 9.68519 10.41201 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011361 B = 0.003326 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.078856 B = 8415.698983 C = 8828.378483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.109 3.891 4 N -0.429 5.429 5 C -0.352 4.352 6 H 0.090 0.910 7 C 0.051 3.949 8 N -0.852 5.852 9 Si 0.912 3.088 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.469 3.531 14 O -0.608 6.608 15 C -0.135 4.135 16 C 0.102 3.898 17 N -0.514 5.514 18 C 0.635 3.365 19 O -0.472 6.472 20 N -0.609 5.609 21 C 0.547 3.453 22 O -0.494 6.494 23 C -0.215 4.215 24 C -0.028 4.028 25 C -0.153 4.153 26 C -0.056 4.056 27 C -0.157 4.157 28 C 0.191 3.809 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.109 0.891 35 H 0.056 0.944 36 H 0.274 0.726 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.434 0.566 42 H 0.141 0.859 43 H 0.132 0.868 44 H 0.136 0.864 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.705 -8.224 -4.535 10.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C -0.015 4.015 4 N -0.145 5.145 5 C -0.480 4.480 6 H 0.107 0.893 7 C -0.157 4.157 8 N -0.488 5.488 9 Si 0.738 3.262 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.196 1.196 13 C 0.256 3.744 14 O -0.495 6.495 15 C -0.176 4.176 16 C -0.020 4.020 17 N -0.225 5.225 18 C 0.332 3.668 19 O -0.279 6.279 20 N -0.363 5.363 21 C 0.335 3.665 22 O -0.370 6.370 23 C -0.223 4.223 24 C -0.047 4.047 25 C -0.172 4.172 26 C -0.075 4.075 27 C -0.177 4.177 28 C 0.091 3.909 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.131 0.869 41 H 0.300 0.700 42 H 0.159 0.841 43 H 0.150 0.850 44 H 0.153 0.847 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.400 -7.435 -5.439 10.209 hybrid contribution -0.438 -0.670 1.616 1.803 sum 3.962 -8.106 -3.823 9.799 Atomic orbital electron populations 1.21659 0.96460 1.00547 1.01501 1.21811 0.94834 0.99242 1.01182 1.21539 0.81122 0.94826 1.03993 1.43439 1.04940 1.61748 1.04396 1.19351 1.07911 1.33307 0.87417 0.89282 1.25324 0.96265 0.93860 1.00263 1.69825 1.31255 1.15261 1.32449 0.86228 0.79097 0.79056 0.81772 1.19676 1.20697 1.19612 1.19906 0.88102 0.81882 0.84472 1.90558 1.70247 1.56940 1.31799 1.21685 0.96430 1.04509 0.94981 1.22032 0.73921 1.06800 0.99229 1.45386 1.09653 1.04000 1.63468 1.19992 0.84734 0.80051 0.82045 1.84033 1.77390 1.29049 1.37453 1.69128 1.02937 1.31356 1.32917 1.18664 0.88602 0.83432 0.75800 1.90776 1.12814 1.87903 1.45469 1.20996 0.91965 0.98106 1.11244 1.21074 1.00781 0.90142 0.92707 1.21198 0.93852 0.98623 1.03550 1.21217 0.94625 0.97233 0.94453 1.20843 1.00650 0.90314 1.05927 1.17927 0.91280 0.84538 0.97161 0.92911 0.93081 0.93557 0.93188 0.92249 0.87364 0.92506 0.91562 0.89274 0.89571 0.87953 0.86923 0.70029 0.84141 0.84980 0.84652 0.83966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.91 37.16 0.37 -1.83 16 2 C -0.13 -2.43 6.26 -26.73 -0.17 -2.60 16 3 C 0.11 2.34 5.05 -4.04 -0.02 2.32 16 4 N -0.43 -9.43 2.54 -114.82 -0.29 -9.72 16 5 C -0.35 -7.86 8.73 -14.93 -0.13 -7.99 16 6 H 0.09 1.89 6.95 -52.49 -0.36 1.52 16 7 C 0.05 1.14 4.95 -17.47 -0.09 1.06 16 8 N -0.85 -20.46 11.34 55.50 0.63 -19.83 16 9 Si 0.91 17.83 29.61 -169.99 -5.03 12.79 16 10 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 11 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 12 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 13 C 0.47 9.51 7.62 -10.98 -0.08 9.43 16 14 O -0.61 -13.55 15.54 5.56 0.09 -13.47 16 15 C -0.14 -2.10 4.65 -27.88 -0.13 -2.23 16 16 C 0.10 1.35 4.18 -4.03 -0.02 1.33 16 17 N -0.51 -6.75 2.68 -116.17 -0.31 -7.06 16 18 C 0.64 8.90 8.49 -89.16 -0.76 8.14 16 19 O -0.47 -5.48 12.10 -16.05 -0.19 -5.67 16 20 N -0.61 -10.27 10.44 -14.62 -0.15 -10.43 16 21 C 0.55 9.57 7.96 -12.75 -0.10 9.46 16 22 O -0.49 -9.85 17.46 4.98 0.09 -9.76 16 23 C -0.21 -3.10 5.89 -104.87 -0.62 -3.71 16 24 C -0.03 -0.33 9.67 -39.35 -0.38 -0.71 16 25 C -0.15 -1.43 10.02 -39.55 -0.40 -1.82 16 26 C -0.06 -0.52 10.02 -39.51 -0.40 -0.91 16 27 C -0.16 -1.73 9.24 -39.49 -0.36 -2.09 16 28 C 0.19 2.52 6.52 -83.88 -0.55 1.97 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.11 2.51 5.36 -51.93 -0.28 2.23 16 35 H 0.06 1.28 7.36 -51.93 -0.38 0.90 16 36 H 0.27 6.26 8.32 -40.82 -0.34 5.92 16 37 H 0.09 1.35 8.09 -51.93 -0.42 0.93 16 38 H 0.09 1.30 7.68 -51.93 -0.40 0.90 16 39 H 0.10 1.31 6.27 -51.93 -0.33 0.99 16 40 H 0.11 1.54 7.23 -51.93 -0.38 1.17 16 41 H 0.43 3.15 9.15 45.56 0.42 3.57 16 42 H 0.14 1.57 7.82 -52.48 -0.41 1.16 16 43 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.14 1.46 6.32 -52.48 -0.33 1.13 16 LS Contribution 379.55 15.07 5.72 5.72 Total: -1.00 -30.89 379.55 -8.25 -39.14 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -4.97 Total: 8.46 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: -3.83 Total: 9.82 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.13 Total: -47.03 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.02 Total: -28.90 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.89 -8.25 -39.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299039093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.899 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds