Wall clock time and date at job start Wed Apr 1 2020 04:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47226 * 2 1 4 4 N 1.46494 * 109.47021 * 179.97438 * 3 2 1 5 5 C 1.37104 * 120.00148 * 269.99327 * 4 3 2 6 6 H 1.07993 * 120.00077 * 145.31086 * 5 4 3 7 7 C 1.38955 * 119.99639 * 325.31113 * 5 4 3 8 8 N 1.31408 * 120.00092 * 337.26718 * 7 5 4 9 9 Si 1.86798 * 119.99836 * 157.27090 * 7 5 4 10 10 H 1.48502 * 109.47242 * 59.99480 * 9 7 5 11 11 H 1.48501 * 109.46919 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46925 * 299.99692 * 9 7 5 13 13 C 1.34778 * 120.00043 * 89.99839 * 4 3 2 14 14 O 1.21283 * 120.00287 * 4.88134 * 13 4 3 15 15 C 1.50700 * 119.99741 * 184.88273 * 13 4 3 16 16 C 1.53005 * 109.46950 * 177.72590 * 15 13 4 17 17 N 1.46508 * 109.46985 * 180.02562 * 16 15 13 18 18 C 1.35610 * 119.82655 * 269.72573 * 17 16 15 19 19 O 1.34768 * 118.46107 * 0.02562 * 18 17 16 20 20 N 1.31334 * 123.07909 * 179.73493 * 18 17 16 21 21 C 1.34213 * 121.73669 * 0.55171 * 20 18 17 22 22 O 1.21935 * 120.83872 * 179.71194 * 21 20 18 23 23 C 1.47482 * 118.31985 * 359.73124 * 21 20 18 24 24 C 1.39276 * 121.92997 * 179.97438 * 23 21 20 25 25 C 1.37822 * 119.48472 * 180.02562 * 24 23 21 26 26 C 1.38740 * 120.46386 * 359.97438 * 25 24 23 27 27 C 1.37926 * 120.66102 * 359.97438 * 26 25 24 28 28 C 1.38279 * 119.82452 * 90.00123 * 17 16 15 29 29 H 1.09004 * 109.46907 * 300.00635 * 1 2 3 30 30 H 1.08994 * 109.46701 * 60.00418 * 1 2 3 31 31 H 1.08995 * 109.47436 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47186 * 239.99509 * 2 1 3 33 33 H 1.09007 * 109.46803 * 119.99234 * 2 1 3 34 34 H 1.08995 * 109.47439 * 59.99664 * 3 2 1 35 35 H 1.09007 * 109.46604 * 299.99356 * 3 2 1 36 36 H 0.96993 * 120.00281 * 185.01405 * 8 7 5 37 37 H 1.08994 * 109.47633 * 297.72834 * 15 13 4 38 38 H 1.08999 * 109.47213 * 57.72824 * 15 13 4 39 39 H 1.08993 * 109.47321 * 299.99773 * 16 15 13 40 40 H 1.08999 * 109.46971 * 60.00086 * 16 15 13 41 41 H 0.96699 * 117.00079 * 89.99746 * 19 18 17 42 42 H 1.08005 * 120.25650 * 0.02562 * 24 23 21 43 43 H 1.08001 * 119.76929 * 180.02562 * 25 24 23 44 44 H 1.07997 * 119.66867 * 180.02562 * 26 25 24 45 45 H 1.08010 * 120.15578 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1901 1.4427 1.1882 6 1 5.1260 0.9105 1.2719 7 6 3.6800 2.1279 2.2842 8 7 2.8277 3.1120 2.1054 9 14 4.2061 1.6502 4.0118 10 1 5.6769 1.8077 4.1428 11 1 3.5249 2.5279 4.9971 12 1 3.8350 0.2354 4.2687 13 6 4.1794 1.4422 -1.1663 14 8 3.5768 1.5314 -2.2150 15 6 5.6823 1.3311 -1.1679 16 6 6.1896 1.2975 -2.6110 17 7 7.6507 1.1888 -2.6126 18 6 8.4105 2.3120 -2.6156 19 8 7.7891 3.5079 -2.6165 20 7 9.7237 2.2891 -2.6121 21 6 10.4096 1.1355 -2.6162 22 8 11.6290 1.1334 -2.6181 23 6 9.6513 -0.1294 -2.6188 24 6 10.2864 -1.3689 -2.6237 25 6 9.5279 -2.5197 -2.6265 26 6 8.1423 -2.4489 -2.6240 27 6 7.5004 -1.2281 -2.6181 28 6 8.2475 -0.0585 -2.6169 29 1 -0.3633 0.5140 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6768 1.9562 -0.8901 36 1 2.5277 3.6375 2.8635 37 1 6.1108 2.1903 -0.6521 38 1 5.9795 0.4153 -0.6570 39 1 5.7612 0.4382 -3.1269 40 1 5.8924 2.2133 -3.1220 41 1 7.5880 3.8988 -1.7552 42 1 11.3648 -1.4279 -2.6252 43 1 10.0156 -3.4833 -2.6298 44 1 7.5606 -3.3588 -2.6258 45 1 6.4213 -1.1826 -2.6166 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299039093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:30 Heat of formation + Delta-G solvation = -70.606584 kcal Electronic energy + Delta-G solvation = -30530.043079 eV Core-core repulsion = 26319.612951 eV Total energy + Delta-G solvation = -4210.430127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.82506 -40.58585 -39.94297 -39.32185 -37.54778 -37.03594 -35.65126 -34.52062 -33.27206 -32.26343 -32.03073 -30.83661 -27.75453 -26.79623 -25.56460 -25.24427 -24.87822 -22.63916 -22.12890 -20.99164 -20.75388 -20.27633 -19.04892 -18.86841 -18.14577 -17.61122 -17.08772 -16.79557 -16.56362 -16.26463 -16.09198 -15.88453 -15.63531 -15.38066 -15.26333 -15.08999 -15.00350 -14.50176 -14.23558 -13.85828 -13.54121 -13.52037 -13.26662 -13.17370 -13.10220 -12.95127 -12.61932 -12.47449 -12.37329 -12.33173 -12.27774 -12.12462 -12.08481 -11.95311 -11.49105 -11.10059 -10.99093 -10.48378 -10.36975 -10.19634 -9.45062 -9.24995 -8.31071 -6.03273 -0.57727 -0.22238 0.47453 0.90696 1.41145 1.50381 1.55830 1.99732 2.01033 2.24370 2.31864 2.81575 2.92101 3.05837 3.17483 3.43930 3.52512 3.76768 3.85283 4.04041 4.16379 4.19233 4.24385 4.27031 4.33408 4.36520 4.51601 4.61195 4.62268 4.77874 4.83089 4.89113 4.92442 5.00346 5.10789 5.12179 5.25507 5.29670 5.36849 5.40542 5.41630 5.46772 5.62683 5.78277 6.03374 6.26442 6.41244 6.56465 6.86351 7.12032 7.58752 8.01662 8.70331 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011361 B = 0.003326 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.078856 B = 8415.698983 C = 8828.378483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C 0.108 3.892 4 N -0.445 5.445 5 C -0.357 4.357 6 H 0.101 0.899 7 C 0.012 3.988 8 N -0.886 5.886 9 Si 0.971 3.029 10 H -0.266 1.266 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.463 3.537 14 O -0.630 6.630 15 C -0.122 4.122 16 C 0.115 3.885 17 N -0.504 5.504 18 C 0.642 3.358 19 O -0.471 6.471 20 N -0.645 5.645 21 C 0.536 3.464 22 O -0.542 6.542 23 C -0.235 4.235 24 C -0.040 4.040 25 C -0.136 4.136 26 C -0.043 4.043 27 C -0.159 4.159 28 C 0.174 3.826 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.037 0.963 36 H 0.273 0.727 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.451 0.549 42 H 0.140 0.860 43 H 0.169 0.831 44 H 0.174 0.826 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 -11.008 -4.231 12.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C -0.015 4.015 4 N -0.162 5.162 5 C -0.484 4.484 6 H 0.118 0.882 7 C -0.192 4.192 8 N -0.523 5.523 9 Si 0.795 3.205 10 H -0.191 1.191 11 H -0.213 1.213 12 H -0.193 1.193 13 C 0.253 3.747 14 O -0.519 6.519 15 C -0.163 4.163 16 C -0.006 4.006 17 N -0.214 5.214 18 C 0.340 3.660 19 O -0.281 6.281 20 N -0.401 5.401 21 C 0.326 3.674 22 O -0.422 6.422 23 C -0.243 4.243 24 C -0.060 4.060 25 C -0.154 4.154 26 C -0.061 4.061 27 C -0.179 4.179 28 C 0.074 3.926 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.321 0.679 42 H 0.157 0.843 43 H 0.186 0.814 44 H 0.192 0.808 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.742 -10.227 -5.126 12.036 hybrid contribution -0.334 0.155 1.457 1.503 sum 3.409 -10.071 -3.669 11.248 Atomic orbital electron populations 1.21625 0.94088 1.02276 1.01625 1.21698 0.96898 0.96789 1.00660 1.21472 0.81525 0.96519 1.02004 1.43683 1.05182 1.62358 1.05000 1.19644 1.08235 1.32975 0.87556 0.88150 1.26005 0.96390 0.93638 1.03150 1.69929 1.32787 1.16437 1.33124 0.85327 0.78763 0.78504 0.77892 1.19130 1.21303 1.19270 1.20591 0.89941 0.80580 0.83608 1.90540 1.71343 1.57564 1.32416 1.21560 0.92883 1.05171 0.96646 1.21866 0.73835 1.07201 0.97730 1.45340 1.09324 1.04080 1.62670 1.19939 0.84303 0.80813 0.80978 1.84012 1.76895 1.28308 1.38935 1.69011 1.04319 1.32065 1.34740 1.19084 0.88417 0.84809 0.75087 1.90721 1.14441 1.88626 1.48370 1.20878 0.92430 0.97581 1.13434 1.21255 1.01197 0.90280 0.93239 1.21607 0.93987 0.99018 1.00831 1.21710 0.94797 0.97843 0.91782 1.21100 1.01119 0.90162 1.05520 1.18135 0.91002 0.85017 0.98403 0.92963 0.92835 0.90986 0.93482 0.92737 0.89211 0.94448 0.91747 0.88824 0.88530 0.86914 0.87238 0.67946 0.84259 0.81390 0.80846 0.82939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.91 71.98 0.71 -3.29 16 2 C -0.12 -4.36 6.26 30.60 0.19 -4.17 16 3 C 0.11 4.69 5.05 86.38 0.44 5.13 16 4 N -0.45 -19.38 2.54 -635.55 -1.61 -20.99 16 5 C -0.36 -15.56 8.73 84.04 0.73 -14.82 16 6 H 0.10 4.06 6.95 -2.91 -0.02 4.04 16 7 C 0.01 0.56 4.95 84.93 0.42 0.98 16 8 N -0.89 -42.85 11.34 21.66 0.25 -42.60 16 9 Si 0.97 35.82 29.61 68.60 2.03 37.85 16 10 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 11 H -0.29 -10.79 7.11 99.48 0.71 -10.08 16 12 H -0.27 -9.67 7.11 99.48 0.71 -8.97 16 13 C 0.46 18.39 7.62 87.66 0.67 19.06 16 14 O -0.63 -27.69 15.54 -3.04 -0.05 -27.73 16 15 C -0.12 -3.58 4.65 29.85 0.14 -3.44 16 16 C 0.12 2.86 4.18 86.38 0.36 3.22 16 17 N -0.50 -12.68 2.68 -633.06 -1.69 -14.38 16 18 C 0.64 17.93 8.49 179.84 1.53 19.46 16 19 O -0.47 -10.73 12.10 -80.34 -0.97 -11.71 16 20 N -0.64 -22.44 10.44 -432.43 -4.51 -26.95 16 21 C 0.54 19.47 7.96 86.77 0.69 20.16 16 22 O -0.54 -22.85 17.46 -5.11 -0.09 -22.94 16 23 C -0.24 -6.72 5.89 -20.03 -0.12 -6.83 16 24 C -0.04 -0.91 9.67 22.42 0.22 -0.69 16 25 C -0.14 -2.01 10.02 22.29 0.22 -1.79 16 26 C -0.04 -0.59 10.02 22.32 0.22 -0.37 16 27 C -0.16 -2.98 9.24 22.33 0.21 -2.78 16 28 C 0.17 4.32 6.52 38.82 0.25 4.57 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 34 H 0.09 4.24 5.36 -2.39 -0.01 4.23 16 35 H 0.04 1.71 7.36 -2.38 -0.02 1.69 16 36 H 0.27 12.61 8.32 -92.71 -0.77 11.84 16 37 H 0.09 2.69 8.09 -2.39 -0.02 2.67 16 38 H 0.10 2.68 7.68 -2.39 -0.02 2.66 16 39 H 0.11 2.62 6.27 -2.39 -0.01 2.61 16 40 H 0.11 2.85 7.23 -2.39 -0.02 2.84 16 41 H 0.45 6.26 9.15 -74.06 -0.68 5.58 16 42 H 0.14 3.09 7.82 -2.91 -0.02 3.07 16 43 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 44 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 45 H 0.15 2.56 6.32 -2.91 -0.02 2.55 16 Total: -1.00 -69.05 379.55 0.60 -68.45 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.37 Total: 26.60 kcal Atomic # 6 Polarization: 27.51 SS G_CDS: 6.89 Total: 34.40 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -7.58 Total: -104.92 kcal Atomic # 8 Polarization: -61.28 SS G_CDS: -1.11 Total: -62.38 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Total: -69.05 0.60 -68.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299039093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.156 kcal (2) G-P(sol) polarization free energy of solvation -69.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds