Wall clock time and date at job start Wed Apr 1 2020 04:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47324 * 2 1 4 4 N 1.46501 * 109.47148 * 179.97438 * 3 2 1 5 5 C 1.37090 * 120.00297 * 265.55483 * 4 3 2 6 6 H 1.08000 * 120.00058 * 145.67377 * 5 4 3 7 7 C 1.38946 * 119.99970 * 325.67610 * 5 4 3 8 8 N 1.31407 * 120.00203 * 338.40829 * 7 5 4 9 9 Si 1.86804 * 119.99906 * 158.40652 * 7 5 4 10 10 H 1.48503 * 109.47052 * 90.00268 * 9 7 5 11 11 H 1.48499 * 109.46950 * 209.99720 * 9 7 5 12 12 H 1.48494 * 109.47037 * 330.00001 * 9 7 5 13 13 C 1.34779 * 119.99558 * 85.55812 * 4 3 2 14 14 O 1.21292 * 120.00390 * 359.97438 * 13 4 3 15 15 C 1.50699 * 119.99685 * 179.97438 * 13 4 3 16 16 C 1.53002 * 109.47156 * 179.97438 * 15 13 4 17 17 N 1.46498 * 109.47260 * 180.02562 * 16 15 13 18 18 N 1.39556 * 119.01326 * 270.00141 * 17 16 15 19 19 H 0.97001 * 119.01093 * 0.02562 * 18 17 16 20 20 C 1.34727 * 121.97861 * 180.02562 * 18 17 16 21 21 O 1.21535 * 120.26346 * 179.97438 * 20 18 17 22 22 C 1.47910 * 119.47823 * 359.97438 * 20 18 17 23 23 C 1.38771 * 121.61490 * 179.97438 * 22 20 18 24 24 C 1.38413 * 119.62002 * 179.97438 * 23 22 20 25 25 C 1.38367 * 120.53576 * 0.03689 * 24 23 22 26 26 C 1.38401 * 120.53952 * 359.97438 * 25 24 23 27 27 C 1.38781 * 119.61929 * 0.02562 * 26 25 24 28 28 C 1.34733 * 119.01061 * 89.73348 * 17 16 15 29 29 O 1.21539 * 120.25847 * 0.02562 * 28 17 16 30 30 H 1.08999 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47606 * 300.00916 * 1 2 3 32 32 H 1.09005 * 109.46919 * 60.00398 * 1 2 3 33 33 H 1.09000 * 109.47606 * 239.99084 * 2 1 3 34 34 H 1.09005 * 109.46919 * 119.99602 * 2 1 3 35 35 H 1.09000 * 109.47184 * 59.99454 * 3 2 1 36 36 H 1.08996 * 109.46650 * 299.99618 * 3 2 1 37 37 H 0.96999 * 120.00231 * 180.02562 * 8 7 5 38 38 H 1.09007 * 109.46795 * 60.00297 * 15 13 4 39 39 H 1.08991 * 109.47454 * 300.00500 * 15 13 4 40 40 H 1.09003 * 109.47371 * 300.00223 * 16 15 13 41 41 H 1.08997 * 109.46821 * 60.00523 * 16 15 13 42 42 H 1.08002 * 120.19591 * 359.97438 * 23 22 20 43 43 H 1.07996 * 119.73385 * 180.02562 * 24 23 22 44 44 H 1.08006 * 119.72662 * 180.02562 * 25 24 23 45 45 H 1.08004 * 120.19086 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.5347 1.1845 6 1 5.1289 1.0151 1.3070 7 6 3.6764 2.2964 2.2269 8 7 2.8017 3.2451 1.9784 9 14 4.2293 1.9720 3.9815 10 1 5.4189 2.8063 4.2879 11 1 3.1295 2.3151 4.9184 12 1 4.5789 0.5367 4.1329 13 6 4.1793 1.3519 -1.1629 14 8 3.5733 1.2699 -2.2103 15 6 5.6863 1.3524 -1.1623 16 6 6.1969 1.2397 -2.6002 17 7 7.6619 1.2396 -2.5996 18 7 8.3389 2.4563 -2.6947 19 1 7.8253 3.2766 -2.7587 20 6 9.6843 2.5256 -2.7001 21 8 10.2418 3.6022 -2.7847 22 6 10.4777 1.2811 -2.6023 23 6 11.8653 1.3010 -2.6044 24 6 12.5666 0.1114 -2.5104 25 6 11.8953 -1.0948 -2.4153 26 6 10.5118 -1.1314 -2.4122 27 6 9.7942 0.0528 -2.5058 28 6 8.3152 0.0653 -2.5019 29 8 7.6940 -0.9758 -2.4161 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 2.4434 3.7772 2.7060 38 1 6.0497 0.5051 -0.5806 39 1 6.0492 2.2797 -0.7191 40 1 5.8340 0.3121 -3.0430 41 1 5.8335 2.0867 -3.1822 42 1 12.3950 2.2392 -2.6790 43 1 13.6465 0.1247 -2.5114 44 1 12.4557 -2.0153 -2.3421 45 1 9.9936 -2.0760 -2.3373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299073743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:34 Heat of formation + Delta-G solvation = -39.637629 kcal Electronic energy + Delta-G solvation = -30069.937001 eV Core-core repulsion = 25860.849788 eV Total energy + Delta-G solvation = -4209.087213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.39732 -39.22066 -38.79193 -38.44167 -36.49727 -35.25571 -33.16705 -32.71546 -31.58260 -31.42435 -31.32189 -29.61619 -26.20728 -25.30058 -24.75144 -24.28713 -22.62613 -21.85375 -20.66296 -19.55280 -19.15033 -19.07401 -17.77846 -17.02923 -16.17729 -16.04954 -15.97623 -15.78487 -15.19840 -15.07217 -14.75647 -14.50604 -14.46119 -14.31029 -14.27515 -13.99012 -13.67028 -13.22993 -13.05386 -12.71714 -12.42354 -12.25231 -12.08271 -11.73398 -11.60311 -11.43722 -11.33756 -11.05786 -10.96279 -10.73691 -10.68234 -10.50743 -10.41603 -10.28978 -10.19740 -9.76982 -9.46389 -9.44058 -9.17033 -8.60321 -8.27727 -7.60352 -6.46440 -4.13935 0.22183 0.70464 1.55372 2.37578 2.52586 3.04995 3.11744 3.16431 3.20642 3.60139 3.80294 3.93713 4.03847 4.42573 4.44853 4.63968 4.83045 4.85640 4.91901 5.10310 5.18499 5.31249 5.41233 5.58058 5.60389 5.74475 5.76394 5.79125 5.85250 5.96820 5.99666 6.02115 6.24341 6.28797 6.36045 6.41162 6.51044 6.54213 6.60456 6.67131 6.81282 7.08763 7.30042 7.39255 7.44720 7.54252 7.84367 7.99861 8.28819 8.98263 9.41735 9.85288 10.54243 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.002933 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.896464 B = 9543.751617 C =10176.386916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.113 3.887 4 N -0.432 5.432 5 C -0.343 4.343 6 H 0.090 0.910 7 C 0.046 3.954 8 N -0.855 5.855 9 Si 0.911 3.089 10 H -0.276 1.276 11 H -0.280 1.280 12 H -0.268 1.268 13 C 0.471 3.529 14 O -0.610 6.610 15 C -0.136 4.136 16 C 0.129 3.871 17 N -0.398 5.398 18 N -0.499 5.499 19 H 0.431 0.569 20 C 0.562 3.438 21 O -0.522 6.522 22 C -0.107 4.107 23 C -0.063 4.063 24 C -0.104 4.104 25 C -0.100 4.100 26 C -0.064 4.064 27 C -0.100 4.100 28 C 0.556 3.444 29 O -0.508 6.508 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.108 0.892 36 H 0.052 0.948 37 H 0.271 0.729 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.144 0.856 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.340 -5.260 -6.118 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.010 4.010 4 N -0.149 5.149 5 C -0.470 4.470 6 H 0.107 0.893 7 C -0.161 4.161 8 N -0.491 5.491 9 Si 0.737 3.263 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.192 1.192 13 C 0.259 3.741 14 O -0.497 6.497 15 C -0.177 4.177 16 C 0.008 3.992 17 N -0.224 5.224 18 N -0.250 5.250 19 H 0.275 0.725 20 C 0.349 3.651 21 O -0.396 6.396 22 C -0.111 4.111 23 C -0.082 4.082 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.083 4.083 27 C -0.104 4.104 28 C 0.345 3.655 29 O -0.381 6.381 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.132 0.868 41 H 0.113 0.887 42 H 0.162 0.838 43 H 0.155 0.845 44 H 0.155 0.845 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.947 -5.284 -6.481 16.262 hybrid contribution -0.036 0.373 1.168 1.227 sum 13.912 -4.911 -5.313 15.681 Atomic orbital electron populations 1.21652 0.96570 1.00455 1.01369 1.21831 0.94726 0.99402 1.01352 1.21488 0.81216 0.94636 1.03682 1.43463 1.04921 1.61786 1.04732 1.19423 1.07744 1.29782 0.90100 0.89280 1.25315 0.96843 0.93493 1.00413 1.69918 1.29759 1.16410 1.33061 0.86190 0.78523 0.79263 0.82303 1.20200 1.20575 1.19244 1.20028 0.88510 0.81568 0.83977 1.90536 1.70409 1.57180 1.31599 1.21708 0.95727 1.04478 0.95819 1.21822 0.72566 1.06133 0.98667 1.47573 1.06041 0.96709 1.72032 1.45279 1.04811 1.01062 1.73813 0.72482 1.18081 0.80388 0.89376 0.77227 1.90885 1.67888 1.29596 1.51241 1.20010 0.94844 0.91947 1.04259 1.21174 0.91828 0.99544 0.95683 1.21431 1.00721 0.91901 0.98160 1.21448 0.93913 0.98698 0.97797 1.21210 0.93852 0.97680 0.95567 1.20111 0.92802 0.94110 1.03349 1.18012 0.87244 0.82155 0.78111 1.90880 1.68303 1.28886 1.50025 0.93615 0.93017 0.93139 0.92829 0.92402 0.87433 0.92937 0.91904 0.89515 0.89230 0.86839 0.88685 0.83785 0.84541 0.84501 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.13 -2.75 6.23 -26.73 -0.17 -2.92 16 3 C 0.11 2.66 4.92 -4.04 -0.02 2.64 16 4 N -0.43 -10.58 2.55 -114.81 -0.29 -10.88 16 5 C -0.34 -8.45 8.70 -14.94 -0.13 -8.58 16 6 H 0.09 2.13 6.98 -52.49 -0.37 1.76 16 7 C 0.05 1.12 4.94 -17.47 -0.09 1.03 16 8 N -0.86 -21.88 11.31 55.50 0.63 -21.26 16 9 Si 0.91 19.05 29.60 -169.99 -5.03 14.02 16 10 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 13 C 0.47 10.93 7.61 -10.98 -0.08 10.85 16 14 O -0.61 -15.13 15.64 5.55 0.09 -15.04 16 15 C -0.14 -2.59 4.68 -27.88 -0.13 -2.72 16 16 C 0.13 2.07 4.82 -4.04 -0.02 2.05 16 17 N -0.40 -5.79 3.50 -61.24 -0.21 -6.00 16 18 N -0.50 -6.51 6.26 30.53 0.19 -6.32 16 19 H 0.43 4.92 8.72 -183.01 -1.60 3.33 16 20 C 0.56 7.62 8.01 -12.32 -0.10 7.52 16 21 O -0.52 -8.04 17.33 5.33 0.09 -7.95 16 22 C -0.11 -1.30 5.89 -104.73 -0.62 -1.91 16 23 C -0.06 -0.61 9.65 -39.32 -0.38 -0.98 16 24 C -0.10 -0.75 10.03 -39.47 -0.40 -1.14 16 25 C -0.10 -0.74 10.03 -39.47 -0.40 -1.14 16 26 C -0.06 -0.65 9.65 -39.32 -0.38 -1.03 16 27 C -0.10 -1.26 5.89 -104.73 -0.62 -1.88 16 28 C 0.56 8.45 7.72 -12.32 -0.10 8.36 16 29 O -0.51 -8.94 16.01 5.33 0.09 -8.85 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.11 2.67 5.34 -51.93 -0.28 2.40 16 36 H 0.05 1.28 7.56 -51.93 -0.39 0.88 16 37 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 38 H 0.09 1.69 7.65 -51.92 -0.40 1.29 16 39 H 0.09 1.68 8.10 -51.93 -0.42 1.26 16 40 H 0.11 1.98 7.32 -51.93 -0.38 1.60 16 41 H 0.09 1.42 8.06 -51.93 -0.42 1.00 16 42 H 0.14 1.24 7.77 -52.49 -0.41 0.83 16 43 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 44 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 45 H 0.15 1.39 7.77 -52.48 -0.41 0.99 16 LS Contribution 382.61 15.07 5.77 5.77 Total: -1.00 -30.85 382.61 -9.10 -39.95 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.16 Total: 8.45 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -3.25 Total: 8.11 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.31 Total: -44.45 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: 0.26 Total: -31.84 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.85 -9.10 -39.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299073743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.309 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds