Wall clock time and date at job start Wed Apr 1 2020 04:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47324 * 2 1 4 4 N 1.46501 * 109.47148 * 179.97438 * 3 2 1 5 5 C 1.37090 * 120.00297 * 265.55483 * 4 3 2 6 6 H 1.08000 * 120.00058 * 145.67377 * 5 4 3 7 7 C 1.38946 * 119.99970 * 325.67610 * 5 4 3 8 8 N 1.31407 * 120.00203 * 338.40829 * 7 5 4 9 9 Si 1.86804 * 119.99906 * 158.40652 * 7 5 4 10 10 H 1.48503 * 109.47052 * 90.00268 * 9 7 5 11 11 H 1.48499 * 109.46950 * 209.99720 * 9 7 5 12 12 H 1.48494 * 109.47037 * 330.00001 * 9 7 5 13 13 C 1.34779 * 119.99558 * 85.55812 * 4 3 2 14 14 O 1.21292 * 120.00390 * 359.97438 * 13 4 3 15 15 C 1.50699 * 119.99685 * 179.97438 * 13 4 3 16 16 C 1.53002 * 109.47156 * 179.97438 * 15 13 4 17 17 N 1.46498 * 109.47260 * 180.02562 * 16 15 13 18 18 N 1.39556 * 119.01326 * 270.00141 * 17 16 15 19 19 H 0.97001 * 119.01093 * 0.02562 * 18 17 16 20 20 C 1.34727 * 121.97861 * 180.02562 * 18 17 16 21 21 O 1.21535 * 120.26346 * 179.97438 * 20 18 17 22 22 C 1.47910 * 119.47823 * 359.97438 * 20 18 17 23 23 C 1.38771 * 121.61490 * 179.97438 * 22 20 18 24 24 C 1.38413 * 119.62002 * 179.97438 * 23 22 20 25 25 C 1.38367 * 120.53576 * 0.03689 * 24 23 22 26 26 C 1.38401 * 120.53952 * 359.97438 * 25 24 23 27 27 C 1.38781 * 119.61929 * 0.02562 * 26 25 24 28 28 C 1.34733 * 119.01061 * 89.73348 * 17 16 15 29 29 O 1.21539 * 120.25847 * 0.02562 * 28 17 16 30 30 H 1.08999 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47606 * 300.00916 * 1 2 3 32 32 H 1.09005 * 109.46919 * 60.00398 * 1 2 3 33 33 H 1.09000 * 109.47606 * 239.99084 * 2 1 3 34 34 H 1.09005 * 109.46919 * 119.99602 * 2 1 3 35 35 H 1.09000 * 109.47184 * 59.99454 * 3 2 1 36 36 H 1.08996 * 109.46650 * 299.99618 * 3 2 1 37 37 H 0.96999 * 120.00231 * 180.02562 * 8 7 5 38 38 H 1.09007 * 109.46795 * 60.00297 * 15 13 4 39 39 H 1.08991 * 109.47454 * 300.00500 * 15 13 4 40 40 H 1.09003 * 109.47371 * 300.00223 * 16 15 13 41 41 H 1.08997 * 109.46821 * 60.00523 * 16 15 13 42 42 H 1.08002 * 120.19591 * 359.97438 * 23 22 20 43 43 H 1.07996 * 119.73385 * 180.02562 * 24 23 22 44 44 H 1.08006 * 119.72662 * 180.02562 * 25 24 23 45 45 H 1.08004 * 120.19086 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.5347 1.1845 6 1 5.1289 1.0151 1.3070 7 6 3.6764 2.2964 2.2269 8 7 2.8017 3.2451 1.9784 9 14 4.2293 1.9720 3.9815 10 1 5.4189 2.8063 4.2879 11 1 3.1295 2.3151 4.9184 12 1 4.5789 0.5367 4.1329 13 6 4.1793 1.3519 -1.1629 14 8 3.5733 1.2699 -2.2103 15 6 5.6863 1.3524 -1.1623 16 6 6.1969 1.2397 -2.6002 17 7 7.6619 1.2396 -2.5996 18 7 8.3389 2.4563 -2.6947 19 1 7.8253 3.2766 -2.7587 20 6 9.6843 2.5256 -2.7001 21 8 10.2418 3.6022 -2.7847 22 6 10.4777 1.2811 -2.6023 23 6 11.8653 1.3010 -2.6044 24 6 12.5666 0.1114 -2.5104 25 6 11.8953 -1.0948 -2.4153 26 6 10.5118 -1.1314 -2.4122 27 6 9.7942 0.0528 -2.5058 28 6 8.3152 0.0653 -2.5019 29 8 7.6940 -0.9758 -2.4161 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5140 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 2.4434 3.7772 2.7060 38 1 6.0497 0.5051 -0.5806 39 1 6.0492 2.2797 -0.7191 40 1 5.8340 0.3121 -3.0430 41 1 5.8335 2.0867 -3.1822 42 1 12.3950 2.2392 -2.6790 43 1 13.6465 0.1247 -2.5114 44 1 12.4557 -2.0153 -2.3421 45 1 9.9936 -2.0760 -2.3373 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299073743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:34 Heat of formation + Delta-G solvation = -58.274270 kcal Electronic energy + Delta-G solvation = -30070.745146 eV Core-core repulsion = 25860.849788 eV Total energy + Delta-G solvation = -4209.895358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.45311 -40.67494 -40.18475 -39.43473 -37.72073 -37.08077 -34.72344 -34.16402 -33.21181 -32.42977 -32.19994 -30.95790 -27.81541 -26.92764 -25.75019 -25.56683 -23.89899 -22.78849 -22.32937 -21.01559 -20.50789 -20.06328 -19.04544 -18.68511 -17.75097 -17.23202 -17.03904 -16.82884 -16.75154 -16.35139 -16.21060 -16.05913 -15.69182 -15.63131 -15.37075 -15.11722 -14.90352 -14.63975 -14.51675 -14.02926 -13.83882 -13.47234 -13.28807 -13.21365 -13.07905 -12.96647 -12.63547 -12.46898 -12.41526 -12.32215 -12.24341 -12.08811 -11.97654 -11.60467 -11.53828 -11.35368 -11.03333 -10.44986 -10.22603 -10.20933 -9.52613 -9.49197 -8.35056 -6.09072 -0.62406 -0.06452 0.39821 1.31065 1.37474 1.45861 1.56472 1.62104 1.95823 2.08785 2.28398 2.74838 2.91249 3.02454 3.04950 3.62705 3.64830 3.89836 3.91517 4.05703 4.15376 4.21300 4.22290 4.28574 4.34203 4.48396 4.49774 4.54499 4.60956 4.73426 4.83109 4.88756 4.92893 4.96705 5.01677 5.08265 5.20831 5.27991 5.30780 5.35081 5.41206 5.47480 5.56245 5.73063 5.96287 6.27150 6.37830 6.41902 6.89035 7.07037 7.52647 7.96395 8.66522 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012719 B = 0.002933 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.896464 B = 9543.751617 C =10176.386916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.125 4.125 3 C 0.113 3.887 4 N -0.446 5.446 5 C -0.359 4.359 6 H 0.093 0.907 7 C 0.009 3.991 8 N -0.885 5.885 9 Si 0.977 3.023 10 H -0.272 1.272 11 H -0.277 1.277 12 H -0.264 1.264 13 C 0.459 3.541 14 O -0.631 6.631 15 C -0.121 4.121 16 C 0.142 3.858 17 N -0.397 5.397 18 N -0.496 5.496 19 H 0.436 0.564 20 C 0.561 3.439 21 O -0.544 6.544 22 C -0.127 4.127 23 C -0.065 4.065 24 C -0.085 4.085 25 C -0.085 4.085 26 C -0.070 4.070 27 C -0.122 4.122 28 C 0.550 3.450 29 O -0.541 6.541 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.040 0.960 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.034 0.966 37 H 0.274 0.726 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.153 0.847 43 H 0.179 0.821 44 H 0.177 0.823 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.947 -6.380 -5.387 18.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C -0.010 4.010 4 N -0.163 5.163 5 C -0.486 4.486 6 H 0.111 0.889 7 C -0.195 4.195 8 N -0.521 5.521 9 Si 0.800 3.200 10 H -0.198 1.198 11 H -0.202 1.202 12 H -0.188 1.188 13 C 0.249 3.751 14 O -0.520 6.520 15 C -0.162 4.162 16 C 0.020 3.980 17 N -0.222 5.222 18 N -0.246 5.246 19 H 0.281 0.719 20 C 0.350 3.650 21 O -0.420 6.420 22 C -0.130 4.130 23 C -0.084 4.084 24 C -0.103 4.103 25 C -0.102 4.102 26 C -0.089 4.089 27 C -0.126 4.126 28 C 0.341 3.659 29 O -0.417 6.417 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.170 0.830 43 H 0.196 0.804 44 H 0.194 0.806 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 16.561 -6.397 -5.757 18.664 hybrid contribution -0.764 0.715 0.896 1.377 sum 15.797 -5.682 -4.861 17.477 Atomic orbital electron populations 1.21606 0.93552 1.02339 1.01802 1.21729 0.97348 0.96951 1.00378 1.21464 0.81229 0.96298 1.02018 1.43729 1.05406 1.61931 1.05223 1.19670 1.08240 1.30242 0.90486 0.88948 1.26087 0.96767 0.92872 1.03728 1.70005 1.30776 1.17120 1.34246 0.85194 0.78113 0.79137 0.77548 1.19757 1.20247 1.18835 1.20679 0.90187 0.80845 0.83418 1.90505 1.71318 1.57974 1.32179 1.21557 0.92796 1.04155 0.97671 1.21526 0.73778 1.05932 0.96756 1.47420 1.05400 0.97402 1.71929 1.45273 1.04997 1.00580 1.73786 0.71908 1.18402 0.80299 0.89820 0.76453 1.90863 1.68128 1.30533 1.52514 1.20007 0.95907 0.90771 1.06362 1.21448 0.90701 1.01174 0.95115 1.21918 1.02653 0.90558 0.95181 1.21899 0.92610 1.00510 0.95215 1.21427 0.95319 0.96749 0.95445 1.19995 0.90965 0.95466 1.06202 1.18570 0.88577 0.81600 0.77159 1.90845 1.69267 1.29896 1.51698 0.90986 0.92504 0.92800 0.94146 0.92844 0.88697 0.94722 0.91620 0.90131 0.89007 0.88215 0.87550 0.82958 0.80397 0.80599 0.83612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 9.91 71.98 0.71 -3.72 16 2 C -0.13 -5.20 6.23 30.59 0.19 -5.01 16 3 C 0.11 5.50 4.92 86.38 0.42 5.92 16 4 N -0.45 -22.50 2.55 -635.54 -1.62 -24.13 16 5 C -0.36 -17.99 8.70 84.04 0.73 -17.26 16 6 H 0.09 4.47 6.98 -2.91 -0.02 4.45 16 7 C 0.01 0.46 4.94 84.93 0.42 0.88 16 8 N -0.88 -45.81 11.31 21.66 0.24 -45.56 16 9 Si 0.98 38.83 29.60 68.60 2.03 40.86 16 10 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 11 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 13 C 0.46 22.09 7.61 87.66 0.67 22.76 16 14 O -0.63 -32.44 15.64 -3.07 -0.05 -32.49 16 15 C -0.12 -4.75 4.68 29.85 0.14 -4.61 16 16 C 0.14 4.74 4.82 86.38 0.42 5.16 16 17 N -0.40 -11.92 3.50 -465.98 -1.63 -13.55 16 18 N -0.50 -13.21 6.26 -175.62 -1.10 -14.31 16 19 H 0.44 10.25 8.72 -213.67 -1.86 8.39 16 20 C 0.56 15.29 8.01 86.81 0.70 15.98 16 21 O -0.54 -16.76 17.33 -3.83 -0.07 -16.83 16 22 C -0.13 -2.98 5.89 -19.94 -0.12 -3.10 16 23 C -0.07 -1.09 9.65 22.44 0.22 -0.87 16 24 C -0.09 -0.85 10.03 22.34 0.22 -0.62 16 25 C -0.08 -0.90 10.03 22.34 0.22 -0.68 16 26 C -0.07 -1.31 9.65 22.44 0.22 -1.09 16 27 C -0.12 -3.05 5.89 -19.93 -0.12 -3.17 16 28 C 0.55 17.21 7.72 86.81 0.67 17.88 16 29 O -0.54 -19.79 16.01 -3.84 -0.06 -19.85 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 35 H 0.10 4.86 5.34 -2.39 -0.01 4.84 16 36 H 0.03 1.75 7.56 -2.39 -0.02 1.74 16 37 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 38 H 0.08 3.26 7.65 -2.38 -0.02 3.24 16 39 H 0.09 3.54 8.10 -2.39 -0.02 3.52 16 40 H 0.10 3.66 7.32 -2.39 -0.02 3.64 16 41 H 0.11 3.28 8.06 -2.39 -0.02 3.26 16 42 H 0.15 2.26 7.77 -2.91 -0.02 2.24 16 43 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 44 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 45 H 0.15 2.65 7.77 -2.91 -0.02 2.62 16 Total: -1.00 -68.87 382.61 2.63 -66.24 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: -0.83 Total: 31.18 kcal Atomic # 6 Polarization: 22.73 SS G_CDS: 5.71 Total: 28.44 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -4.11 Total: -97.55 kcal Atomic # 8 Polarization: -68.99 SS G_CDS: -0.18 Total: -69.17 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -68.87 2.63 -66.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299073743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.968 kcal (2) G-P(sol) polarization free energy of solvation -68.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds