Wall clock time and date at job start Wed Apr 1 2020 03:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46938 * 2 1 4 4 H 1.09000 * 109.47062 * 56.92595 * 3 2 1 5 5 N 1.46502 * 109.47379 * 296.92672 * 3 2 1 6 6 S 1.65596 * 120.00316 * 116.80520 * 5 3 2 7 7 O 1.42099 * 106.40311 * 181.31313 * 6 5 3 8 8 O 1.42098 * 106.40162 * 314.23519 * 6 5 3 9 9 N 1.65606 * 107.21660 * 67.77116 * 6 5 3 10 10 C 1.46494 * 119.99743 * 92.46377 * 9 6 5 11 11 C 1.46493 * 119.99966 * 272.46378 * 9 6 5 12 12 H 1.09005 * 109.47312 * 6.13411 * 11 9 6 13 13 C 1.52994 * 109.47337 * 126.13475 * 11 9 6 14 14 C 1.50698 * 109.47207 * 246.13631 * 11 9 6 15 15 H 1.08009 * 119.99973 * 359.97438 * 14 11 9 16 16 C 1.37876 * 120.00277 * 180.02562 * 14 11 9 17 17 N 1.31515 * 120.00066 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 120.00167 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46796 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47207 * 119.99216 * 18 16 14 21 21 H 1.48493 * 109.46862 * 239.99732 * 18 16 14 22 22 C 1.50706 * 109.47011 * 176.92499 * 3 2 1 23 23 C 1.41376 * 128.00578 * 257.33826 * 22 3 2 24 24 C 1.50698 * 126.80406 * 359.97438 * 23 22 3 25 25 N 1.30173 * 106.39591 * 179.97438 * 23 22 3 26 26 O 1.20920 * 111.60170 * 0.02562 * 25 23 22 27 27 C 1.34041 * 111.56976 * 359.75550 * 26 25 23 28 28 C 1.50696 * 126.77796 * 180.29611 * 27 26 25 29 29 H 1.09001 * 109.46898 * 175.46230 * 1 2 3 30 30 H 1.09002 * 109.47040 * 295.45809 * 1 2 3 31 31 H 1.08994 * 109.47494 * 55.45997 * 1 2 3 32 32 H 1.09004 * 109.46956 * 240.00005 * 2 1 3 33 33 H 1.08993 * 109.47157 * 120.00276 * 2 1 3 34 34 H 0.97003 * 119.99610 * 296.80352 * 5 3 2 35 35 H 1.09005 * 109.47004 * 89.99916 * 10 9 6 36 36 H 1.09001 * 109.47047 * 209.99974 * 10 9 6 37 37 H 1.08997 * 109.47316 * 330.00138 * 10 9 6 38 38 H 1.09003 * 109.47662 * 188.59647 * 13 11 9 39 39 H 1.09004 * 109.47419 * 308.59572 * 13 11 9 40 40 H 1.09006 * 109.47387 * 68.59299 * 13 11 9 41 41 H 0.97001 * 119.99984 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.47462 * 95.31647 * 24 23 22 43 43 H 1.08998 * 109.47411 * 215.31751 * 24 23 22 44 44 H 1.08999 * 109.47471 * 335.31866 * 24 23 22 45 45 H 1.09000 * 109.46919 * 270.10625 * 28 27 26 46 46 H 1.09002 * 109.47474 * 30.10951 * 28 27 26 47 47 H 1.08998 * 109.47464 * 150.11169 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6323 1.9720 0.8611 5 7 1.6130 2.1114 -1.2315 6 16 0.5910 3.4122 -1.1557 7 8 0.3459 3.8087 -2.4980 8 8 -0.4437 3.0572 -0.2488 9 7 1.4284 4.6529 -0.4471 10 6 2.1555 5.6149 -1.2790 11 6 1.4421 4.7883 1.0115 12 1 0.9440 3.9292 1.4609 13 6 2.8891 4.8540 1.5040 14 6 0.7196 6.0507 1.4056 15 1 0.2931 6.6886 0.6454 16 6 0.6037 6.3919 2.7364 17 7 1.1234 5.6155 3.6620 18 14 -0.2914 7.9572 3.2249 19 1 -0.7795 8.6494 2.0051 20 1 -1.4446 7.6166 4.0961 21 1 0.6389 8.8500 3.9614 22 6 3.5451 1.4432 0.0762 23 6 4.3596 1.7072 1.2012 24 6 3.8936 2.0516 2.5923 25 7 5.5919 1.5938 0.7973 26 8 5.6513 1.3078 -0.3761 27 6 4.4305 1.1862 -0.9160 28 6 4.1070 0.8347 -2.3453 29 1 -0.3633 -1.0245 -0.0813 30 1 -0.3633 0.4418 0.9279 31 1 -0.3634 0.5826 -0.8465 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.9290 1.7924 -2.0913 35 1 1.4975 6.4462 -1.5325 36 1 3.0196 5.9896 -0.7303 37 1 2.4902 5.1247 -2.1932 38 1 2.9052 4.8009 2.5927 39 1 3.4519 4.0168 1.0911 40 1 3.3414 5.7911 1.1793 41 1 1.0415 5.8554 4.5983 42 1 3.8597 1.1465 3.1987 43 1 4.5857 2.7640 3.0414 44 1 2.8985 2.4935 2.5432 45 1 4.0411 1.7472 -2.9378 46 1 4.8921 0.1953 -2.7488 47 1 3.1538 0.3074 -2.3830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330422010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:31 Heat of formation + Delta-G solvation = -24.553946 kcal Electronic energy + Delta-G solvation = -31666.626604 eV Core-core repulsion = 27593.637421 eV Total energy + Delta-G solvation = -4072.989184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.80839 -37.77471 -36.62139 -36.21329 -35.25435 -34.25497 -32.94906 -32.59407 -31.55250 -29.27615 -28.38147 -28.32249 -25.93103 -25.69884 -25.06961 -22.33378 -21.13093 -20.75964 -20.00774 -18.99659 -17.53562 -17.49427 -16.91921 -16.76729 -16.26518 -15.94860 -15.02302 -14.71255 -14.42648 -14.32208 -13.76492 -13.61180 -13.46890 -13.34374 -13.23404 -13.10701 -12.87392 -12.59595 -12.20582 -12.18646 -12.05668 -11.85922 -11.77541 -11.72297 -11.40062 -11.32173 -11.23522 -11.06564 -11.00123 -10.95267 -10.77757 -10.73865 -10.48891 -10.27382 -10.05175 -9.66624 -9.50974 -9.28692 -9.05991 -8.48322 -7.99899 -6.10564 -4.14993 1.14292 1.54448 2.33501 3.15390 3.26765 3.35152 3.39330 3.47966 4.06593 4.34070 4.39324 4.52523 4.66993 4.88276 4.96671 5.08015 5.12905 5.21758 5.24741 5.27934 5.41463 5.44568 5.57553 5.63230 5.69884 5.77629 5.84907 5.95313 5.97899 6.04035 6.08984 6.11687 6.29889 6.36428 6.44586 6.49915 6.57312 6.72790 6.78110 6.94682 7.07455 7.42223 7.60160 7.75493 7.98132 8.23804 8.42195 8.86567 9.50801 10.95736 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.005250 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.607187 B = 5331.737454 C = 6192.662380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.234 3.766 4 H 0.109 0.891 5 N -1.127 6.127 6 S 2.774 3.226 7 O -0.997 6.997 8 O -0.965 6.965 9 N -0.990 5.990 10 C 0.110 3.890 11 C 0.272 3.728 12 H 0.053 0.947 13 C -0.148 4.148 14 C -0.519 4.519 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.890 5.890 18 Si 0.896 3.104 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.202 4.202 23 C 0.045 3.955 24 C -0.085 4.085 25 N -0.370 5.370 26 O 0.092 5.908 27 C -0.027 4.027 28 C -0.079 4.079 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.406 0.594 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.018 0.982 40 H 0.033 0.967 41 H 0.262 0.738 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.938 -11.720 -8.378 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C 0.126 3.874 4 H 0.127 0.873 5 N -0.884 5.884 6 S 2.783 3.217 7 O -0.981 6.981 8 O -0.948 6.948 9 N -0.833 5.833 10 C -0.036 4.036 11 C 0.170 3.830 12 H 0.070 0.930 13 C -0.208 4.208 14 C -0.559 4.559 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.529 5.529 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.211 1.211 22 C -0.207 4.207 23 C -0.114 4.114 24 C -0.142 4.142 25 N -0.077 5.077 26 O 0.029 5.971 27 C -0.091 4.091 28 C -0.136 4.136 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.239 0.761 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.037 0.963 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.102 0.898 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.154 -11.505 -7.724 15.162 hybrid contribution -0.545 0.873 -0.041 1.030 sum 5.609 -10.632 -7.765 14.310 Atomic orbital electron populations 1.21773 0.94384 1.01160 1.03578 1.21858 0.97084 0.94884 1.02498 1.18897 0.86307 0.94697 0.87481 0.87332 1.56501 1.68804 1.49855 1.13254 1.02167 0.74080 0.72695 0.72769 1.93548 1.84792 1.82282 1.37508 1.93625 1.52879 1.83034 1.65263 1.57697 1.68015 1.40394 1.17178 1.21128 0.97019 0.92757 0.92712 1.18681 0.94006 0.98390 0.71971 0.92968 1.22251 0.96864 0.97881 1.03762 1.21381 1.35165 1.07183 0.92147 0.92060 1.24862 0.95400 0.97042 0.96351 1.69854 1.45089 1.37396 1.00573 0.86474 0.79488 0.83088 0.78564 1.19800 1.20895 1.21053 1.21212 0.97727 1.08892 0.92898 1.23442 0.88272 1.00725 0.98960 1.20426 1.03571 1.02136 0.88101 1.73832 1.21383 1.19274 0.93212 1.84777 1.29366 1.65228 1.17750 1.24044 0.84222 1.02885 0.97914 1.20423 1.03129 1.03083 0.86993 0.92852 0.91430 0.92542 0.91687 0.90760 0.76063 0.93286 0.91106 0.93338 0.89244 0.96331 0.94741 0.92807 0.90613 0.90169 0.88480 0.89276 0.89783 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.38 37.16 0.35 -1.53 16 2 C -0.12 -1.39 5.61 -26.73 -0.15 -1.54 16 3 C 0.23 3.19 2.58 -69.08 -0.18 3.01 16 4 H 0.11 1.73 5.75 -51.93 -0.30 1.44 16 5 N -1.13 -15.49 4.58 -5.88 -0.03 -15.52 16 6 S 2.77 51.52 5.98 -107.50 -0.64 50.88 16 7 O -1.00 -19.88 17.13 -57.17 -0.98 -20.86 16 8 O -0.96 -20.79 15.25 -57.17 -0.87 -21.66 16 9 N -0.99 -19.75 3.12 -115.86 -0.36 -20.11 16 10 C 0.11 1.95 9.81 59.84 0.59 2.54 16 11 C 0.27 6.25 2.42 -69.09 -0.17 6.08 16 12 H 0.05 1.29 6.24 -51.93 -0.32 0.97 16 13 C -0.15 -3.16 7.12 37.15 0.26 -2.90 16 14 C -0.52 -13.61 8.46 -34.44 -0.29 -13.90 16 15 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 16 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 17 N -0.89 -23.58 11.42 55.43 0.63 -22.95 16 18 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.20 -2.73 5.02 -104.42 -0.52 -3.26 16 23 C 0.05 0.68 6.08 -82.10 -0.50 0.18 16 24 C -0.09 -1.23 9.20 36.00 0.33 -0.90 16 25 N -0.37 -5.79 12.07 33.42 0.40 -5.39 16 26 O 0.09 1.29 11.20 17.17 0.19 1.48 16 27 C -0.03 -0.32 7.43 -35.31 -0.26 -0.58 16 28 C -0.08 -0.61 8.85 36.00 0.32 -0.29 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.76 6.93 -51.93 -0.36 0.40 16 32 H 0.06 0.60 7.08 -51.93 -0.37 0.23 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.41 4.42 6.27 -34.47 -0.22 4.20 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.23 6.33 -51.93 -0.33 0.90 16 37 H 0.05 0.73 7.72 -51.93 -0.40 0.33 16 38 H 0.09 2.07 6.24 -51.93 -0.32 1.74 16 39 H 0.02 0.34 5.31 -51.93 -0.28 0.07 16 40 H 0.03 0.74 6.92 -51.93 -0.36 0.38 16 41 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.10 1.54 5.99 -51.93 -0.31 1.23 16 45 H 0.09 0.62 8.10 -51.93 -0.42 0.20 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.09 0.59 6.02 -51.93 -0.31 0.27 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -31.56 376.89 -8.12 -39.67 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.80 Total: 4.35 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -0.32 Total: -11.44 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: 0.65 Total: -63.97 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -1.66 Total: -41.04 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 51.52 SS G_CDS: -0.64 Total: 50.88 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.56 -8.12 -39.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330422010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.119 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds