Wall clock time and date at job start Wed Apr 1 2020 03:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46938 * 2 1 4 4 H 1.09000 * 109.47062 * 56.92595 * 3 2 1 5 5 N 1.46502 * 109.47379 * 296.92672 * 3 2 1 6 6 S 1.65596 * 120.00316 * 116.80520 * 5 3 2 7 7 O 1.42099 * 106.40311 * 181.31313 * 6 5 3 8 8 O 1.42098 * 106.40162 * 314.23519 * 6 5 3 9 9 N 1.65606 * 107.21660 * 67.77116 * 6 5 3 10 10 C 1.46494 * 119.99743 * 92.46377 * 9 6 5 11 11 C 1.46493 * 119.99966 * 272.46378 * 9 6 5 12 12 H 1.09005 * 109.47312 * 6.13411 * 11 9 6 13 13 C 1.52994 * 109.47337 * 126.13475 * 11 9 6 14 14 C 1.50698 * 109.47207 * 246.13631 * 11 9 6 15 15 H 1.08009 * 119.99973 * 359.97438 * 14 11 9 16 16 C 1.37876 * 120.00277 * 180.02562 * 14 11 9 17 17 N 1.31515 * 120.00066 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 120.00167 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46796 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47207 * 119.99216 * 18 16 14 21 21 H 1.48493 * 109.46862 * 239.99732 * 18 16 14 22 22 C 1.50706 * 109.47011 * 176.92499 * 3 2 1 23 23 C 1.41376 * 128.00578 * 257.33826 * 22 3 2 24 24 C 1.50698 * 126.80406 * 359.97438 * 23 22 3 25 25 N 1.30173 * 106.39591 * 179.97438 * 23 22 3 26 26 O 1.20920 * 111.60170 * 0.02562 * 25 23 22 27 27 C 1.34041 * 111.56976 * 359.75550 * 26 25 23 28 28 C 1.50696 * 126.77796 * 180.29611 * 27 26 25 29 29 H 1.09001 * 109.46898 * 175.46230 * 1 2 3 30 30 H 1.09002 * 109.47040 * 295.45809 * 1 2 3 31 31 H 1.08994 * 109.47494 * 55.45997 * 1 2 3 32 32 H 1.09004 * 109.46956 * 240.00005 * 2 1 3 33 33 H 1.08993 * 109.47157 * 120.00276 * 2 1 3 34 34 H 0.97003 * 119.99610 * 296.80352 * 5 3 2 35 35 H 1.09005 * 109.47004 * 89.99916 * 10 9 6 36 36 H 1.09001 * 109.47047 * 209.99974 * 10 9 6 37 37 H 1.08997 * 109.47316 * 330.00138 * 10 9 6 38 38 H 1.09003 * 109.47662 * 188.59647 * 13 11 9 39 39 H 1.09004 * 109.47419 * 308.59572 * 13 11 9 40 40 H 1.09006 * 109.47387 * 68.59299 * 13 11 9 41 41 H 0.97001 * 119.99984 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.47462 * 95.31647 * 24 23 22 43 43 H 1.08998 * 109.47411 * 215.31751 * 24 23 22 44 44 H 1.08999 * 109.47471 * 335.31866 * 24 23 22 45 45 H 1.09000 * 109.46919 * 270.10625 * 28 27 26 46 46 H 1.09002 * 109.47474 * 30.10951 * 28 27 26 47 47 H 1.08998 * 109.47464 * 150.11169 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6323 1.9720 0.8611 5 7 1.6130 2.1114 -1.2315 6 16 0.5910 3.4122 -1.1557 7 8 0.3459 3.8087 -2.4980 8 8 -0.4437 3.0572 -0.2488 9 7 1.4284 4.6529 -0.4471 10 6 2.1555 5.6149 -1.2790 11 6 1.4421 4.7883 1.0115 12 1 0.9440 3.9292 1.4609 13 6 2.8891 4.8540 1.5040 14 6 0.7196 6.0507 1.4056 15 1 0.2931 6.6886 0.6454 16 6 0.6037 6.3919 2.7364 17 7 1.1234 5.6155 3.6620 18 14 -0.2914 7.9572 3.2249 19 1 -0.7795 8.6494 2.0051 20 1 -1.4446 7.6166 4.0961 21 1 0.6389 8.8500 3.9614 22 6 3.5451 1.4432 0.0762 23 6 4.3596 1.7072 1.2012 24 6 3.8936 2.0516 2.5923 25 7 5.5919 1.5938 0.7973 26 8 5.6513 1.3078 -0.3761 27 6 4.4305 1.1862 -0.9160 28 6 4.1070 0.8347 -2.3453 29 1 -0.3633 -1.0245 -0.0813 30 1 -0.3633 0.4418 0.9279 31 1 -0.3634 0.5826 -0.8465 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.9290 1.7924 -2.0913 35 1 1.4975 6.4462 -1.5325 36 1 3.0196 5.9896 -0.7303 37 1 2.4902 5.1247 -2.1932 38 1 2.9052 4.8009 2.5927 39 1 3.4519 4.0168 1.0911 40 1 3.3414 5.7911 1.1793 41 1 1.0415 5.8554 4.5983 42 1 3.8597 1.1465 3.1987 43 1 4.5857 2.7640 3.0414 44 1 2.8985 2.4935 2.5432 45 1 4.0411 1.7472 -2.9378 46 1 4.8921 0.1953 -2.7488 47 1 3.1538 0.3074 -2.3830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330422010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:30 Heat of formation + Delta-G solvation = -46.135407 kcal Electronic energy + Delta-G solvation = -31667.562447 eV Core-core repulsion = 27593.637421 eV Total energy + Delta-G solvation = -4073.925026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.89557 -38.93426 -38.14315 -37.89132 -36.84870 -35.36251 -34.50729 -33.86005 -32.64832 -30.98681 -29.57129 -29.22346 -27.33305 -26.99659 -26.88019 -23.35630 -22.55586 -22.14579 -21.07465 -20.40357 -19.00796 -18.63339 -18.48627 -18.13206 -17.88776 -17.26853 -16.70154 -16.00229 -15.71712 -15.43730 -15.24372 -14.96575 -14.76454 -14.64391 -14.18797 -14.07580 -13.98828 -13.77029 -13.68728 -13.37978 -13.32287 -13.27428 -13.17071 -13.07705 -12.99594 -12.95694 -12.79001 -12.68358 -12.53276 -12.24067 -12.19402 -12.02932 -11.99687 -11.86633 -11.68638 -11.14965 -10.82027 -10.64363 -10.48548 -10.05757 -9.66469 -8.10919 -6.21723 -0.33622 0.55498 1.22032 1.39805 1.43514 1.52815 2.03060 2.26596 2.43596 2.64145 3.17892 3.24307 3.40554 3.59626 3.66301 3.95219 4.00598 4.12379 4.21082 4.28288 4.45677 4.60122 4.65185 4.66373 4.68975 4.70456 4.79151 4.83350 4.86925 4.90341 4.98806 4.99301 5.03452 5.10138 5.13592 5.15270 5.21947 5.28768 5.35916 5.50922 5.62939 5.70013 5.89243 6.06577 6.18735 6.31143 6.83639 7.38235 7.46240 8.93247 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.005250 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.607187 B = 5331.737454 C = 6192.662380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C 0.237 3.763 4 H 0.080 0.920 5 N -1.106 6.106 6 S 2.790 3.210 7 O -1.009 7.009 8 O -0.999 6.999 9 N -1.000 6.000 10 C 0.104 3.896 11 C 0.282 3.718 12 H 0.030 0.970 13 C -0.128 4.128 14 C -0.540 4.540 15 H 0.049 0.951 16 C 0.025 3.975 17 N -0.906 5.906 18 Si 0.947 3.053 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.277 1.277 22 C -0.218 4.218 23 C 0.031 3.969 24 C -0.082 4.082 25 N -0.394 5.394 26 O 0.091 5.909 27 C -0.006 4.006 28 C -0.086 4.086 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.423 0.577 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.039 0.961 40 H 0.026 0.974 41 H 0.264 0.736 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.109 0.891 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.782 -13.017 -10.189 17.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C 0.129 3.871 4 H 0.098 0.902 5 N -0.868 5.868 6 S 2.798 3.202 7 O -0.993 6.993 8 O -0.982 6.982 9 N -0.841 5.841 10 C -0.042 4.042 11 C 0.178 3.822 12 H 0.048 0.952 13 C -0.187 4.187 14 C -0.580 4.580 15 H 0.067 0.933 16 C -0.176 4.176 17 N -0.545 5.545 18 Si 0.773 3.227 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.202 1.202 22 C -0.224 4.224 23 C -0.128 4.128 24 C -0.139 4.139 25 N -0.102 5.102 26 O 0.028 5.972 27 C -0.071 4.071 28 C -0.143 4.143 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.261 0.739 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.045 0.955 41 H 0.073 0.927 42 H 0.113 0.887 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.121 0.879 46 H 0.128 0.872 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.008 -12.793 -9.559 17.440 hybrid contribution -0.796 1.214 0.460 1.523 sum 6.212 -11.580 -9.099 15.983 Atomic orbital electron populations 1.21791 0.95423 1.02238 1.01681 1.21863 0.96019 0.93323 1.04496 1.18881 0.86499 0.95717 0.86048 0.90226 1.55961 1.68130 1.48250 1.14494 1.01501 0.73908 0.72893 0.71852 1.93523 1.85206 1.82856 1.37736 1.93585 1.54868 1.83548 1.66223 1.57640 1.68495 1.41885 1.16113 1.21294 0.96673 0.92638 0.93597 1.18323 0.94079 0.96066 0.73727 0.95189 1.21989 0.96160 0.98219 1.02341 1.21676 1.35776 1.08347 0.92208 0.93315 1.25494 0.96140 0.99455 0.96504 1.69944 1.45500 1.38308 1.00706 0.85686 0.78588 0.80371 0.78053 1.19957 1.20819 1.20227 1.21132 0.97511 1.10653 0.93117 1.23564 0.88676 1.01134 0.99406 1.20344 1.02074 1.02740 0.88771 1.73828 1.21709 1.20493 0.94141 1.84749 1.30268 1.64972 1.17211 1.24743 0.82928 1.00225 0.99177 1.20756 1.04915 1.04445 0.84163 0.90341 0.93973 0.93785 0.88575 0.89796 0.73902 0.94061 0.90977 0.90242 0.91247 0.94244 0.95482 0.92669 0.88677 0.91010 0.90428 0.87918 0.87240 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.38 71.98 0.68 -2.97 16 2 C -0.12 -2.38 5.61 30.59 0.17 -2.21 16 3 C 0.24 6.16 2.58 44.25 0.11 6.27 16 4 H 0.08 2.60 5.75 -2.39 -0.01 2.59 16 5 N -1.11 -28.43 4.58 -172.51 -0.79 -29.22 16 6 S 2.79 102.39 5.98 -56.49 -0.34 102.05 16 7 O -1.01 -38.89 17.13 -128.00 -2.19 -41.08 16 8 O -1.00 -43.94 15.25 -128.00 -1.95 -45.89 16 9 N -1.00 -39.94 3.12 -520.48 -1.62 -41.56 16 10 C 0.10 3.59 9.81 127.77 1.25 4.85 16 11 C 0.28 13.25 2.42 44.24 0.11 13.36 16 12 H 0.03 1.56 6.24 -2.38 -0.01 1.54 16 13 C -0.13 -5.56 7.12 71.98 0.51 -5.05 16 14 C -0.54 -28.98 8.46 25.60 0.22 -28.76 16 15 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 16 C 0.02 1.32 5.30 84.65 0.45 1.77 16 17 N -0.91 -48.95 11.42 21.45 0.25 -48.71 16 18 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 C -0.22 -5.54 5.02 -19.74 -0.10 -5.64 16 23 C 0.03 0.91 6.08 43.58 0.26 1.17 16 24 C -0.08 -2.41 9.20 71.24 0.66 -1.75 16 25 N -0.39 -11.92 12.07 -49.57 -0.60 -12.51 16 26 O 0.09 2.34 11.20 71.62 0.80 3.14 16 27 C -0.01 -0.13 7.43 25.04 0.19 0.05 16 28 C -0.09 -0.93 8.85 71.23 0.63 -0.30 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 1.14 6.93 -2.39 -0.02 1.12 16 32 H 0.10 1.36 7.08 -2.38 -0.02 1.34 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.42 7.83 6.27 -96.74 -0.61 7.22 16 35 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.07 2.45 6.33 -2.39 -0.02 2.44 16 37 H 0.08 2.22 7.72 -2.39 -0.02 2.20 16 38 H 0.07 3.31 6.24 -2.39 -0.01 3.30 16 39 H 0.04 1.50 5.31 -2.39 -0.01 1.49 16 40 H 0.03 1.17 6.92 -2.38 -0.02 1.15 16 41 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 42 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.08 2.59 5.99 -2.39 -0.01 2.57 16 45 H 0.10 0.95 8.10 -2.39 -0.02 0.93 16 46 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.11 0.83 6.02 -2.39 -0.01 0.82 16 Total: -1.00 -69.28 376.89 1.11 -68.16 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.40 Total: 19.57 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 5.14 Total: -19.20 kcal Atomic # 7 Polarization: -129.24 SS G_CDS: -2.77 Total: -132.01 kcal Atomic # 8 Polarization: -80.49 SS G_CDS: -3.34 Total: -83.83 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 102.39 SS G_CDS: -0.34 Total: 102.05 kcal Total: -69.28 1.11 -68.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330422010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.027 kcal (2) G-P(sol) polarization free energy of solvation -69.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds