Wall clock time and date at job start Wed Apr 1 2020 03:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46942 * 2 1 4 4 H 1.08998 * 109.47208 * 55.19003 * 3 2 1 5 5 N 1.46503 * 109.47112 * 295.18325 * 3 2 1 6 6 S 1.65598 * 119.99848 * 125.93911 * 5 3 2 7 7 O 1.42101 * 106.40262 * 310.31336 * 6 5 3 8 8 O 1.42101 * 106.40219 * 177.39046 * 6 5 3 9 9 N 1.65599 * 107.21640 * 63.85119 * 6 5 3 10 10 C 1.46497 * 120.00359 * 270.00233 * 9 6 5 11 11 C 1.46507 * 119.99799 * 89.99991 * 9 6 5 12 12 H 1.08997 * 109.47185 * 359.97438 * 11 9 6 13 13 C 1.52999 * 109.47221 * 239.99683 * 11 9 6 14 14 C 1.50700 * 109.47163 * 120.00085 * 11 9 6 15 15 H 1.07997 * 120.00069 * 33.79840 * 14 11 9 16 16 C 1.37873 * 120.00071 * 213.80892 * 14 11 9 17 17 N 1.31517 * 120.00230 * 180.87741 * 16 14 11 18 18 Si 1.86804 * 119.99885 * 0.87643 * 16 14 11 19 19 H 1.48492 * 109.47197 * 89.49918 * 18 16 14 20 20 H 1.48505 * 109.46958 * 209.49624 * 18 16 14 21 21 H 1.48495 * 109.46962 * 329.49213 * 18 16 14 22 22 C 1.50707 * 109.46929 * 175.18567 * 3 2 1 23 23 C 1.41376 * 128.00542 * 255.00110 * 22 3 2 24 24 C 1.50693 * 126.80303 * 359.97438 * 23 22 3 25 25 N 1.30175 * 106.39289 * 179.97438 * 23 22 3 26 26 O 1.20925 * 111.60960 * 359.97438 * 25 23 22 27 27 C 1.34045 * 111.56117 * 359.76494 * 26 25 23 28 28 C 1.50706 * 126.77430 * 180.28881 * 27 26 25 29 29 H 1.09001 * 109.46822 * 305.20558 * 1 2 3 30 30 H 1.08993 * 109.46939 * 65.20217 * 1 2 3 31 31 H 1.09000 * 109.47007 * 185.20653 * 1 2 3 32 32 H 1.09003 * 109.47128 * 239.99941 * 2 1 3 33 33 H 1.09002 * 109.47199 * 120.00069 * 2 1 3 34 34 H 0.97002 * 119.99613 * 305.94402 * 5 3 2 35 35 H 1.09008 * 109.46532 * 270.00246 * 10 9 6 36 36 H 1.09001 * 109.47222 * 29.99496 * 10 9 6 37 37 H 1.08998 * 109.47514 * 150.00189 * 10 9 6 38 38 H 1.09006 * 109.46761 * 55.19910 * 13 11 9 39 39 H 1.08991 * 109.47348 * 175.19783 * 13 11 9 40 40 H 1.09001 * 109.47383 * 295.19908 * 13 11 9 41 41 H 0.96996 * 120.00195 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.47347 * 90.00570 * 24 23 22 43 43 H 1.09004 * 109.47226 * 210.00061 * 24 23 22 44 44 H 1.08998 * 109.47313 * 330.00126 * 24 23 22 45 45 H 1.08995 * 109.46918 * 270.10526 * 28 27 26 46 46 H 1.09003 * 109.46953 * 30.11227 * 28 27 26 47 47 H 1.08997 * 109.46634 * 150.10645 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6080 1.9807 0.8437 5 7 1.6486 2.0989 -1.2500 6 16 0.8138 3.5284 -1.2084 7 8 -0.2706 3.3339 -0.3109 8 8 0.6414 3.9319 -2.5600 9 7 1.8049 4.6546 -0.5070 10 6 1.7805 4.8492 0.9447 11 6 2.7063 5.4562 -1.3385 12 1 2.5850 5.1725 -2.3838 13 6 4.1533 5.2081 -0.9078 14 6 2.3764 6.9173 -1.1725 15 1 2.0277 7.2873 -0.2197 16 6 2.5195 7.7816 -2.2371 17 7 2.2481 9.0598 -2.0876 18 14 3.0989 7.1372 -3.8920 19 1 1.9248 6.7166 -4.6980 20 1 3.8343 8.2087 -4.6105 21 1 3.9982 5.9741 -3.6829 22 6 3.5423 1.4442 0.1193 23 6 4.3253 1.7635 1.2523 24 6 3.8209 2.1791 2.6101 25 7 5.5682 1.6273 0.8902 26 8 5.6602 1.2810 -0.2648 27 6 4.4548 1.1339 -0.8324 28 6 4.1711 0.7097 -2.2504 29 1 -0.3633 0.5925 0.8397 30 1 -0.3633 0.4310 -0.9329 31 1 -0.3633 -1.0234 0.0933 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8785 1.6960 -2.1019 35 1 1.0413 5.6097 1.1969 36 1 1.5171 3.9107 1.4328 37 1 2.7645 5.1720 1.2848 38 1 4.3657 4.1397 -0.9466 39 1 4.8283 5.7374 -1.5801 40 1 4.2966 5.5703 0.1103 41 1 2.3491 9.6679 -2.8365 42 1 3.6769 1.2946 3.2306 43 1 4.5490 2.8390 3.0819 44 1 2.8721 2.7043 2.5002 45 1 4.1250 1.5905 -2.8908 46 1 4.9654 0.0489 -2.5978 47 1 3.2177 0.1828 -2.2881 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330422012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:38 Heat of formation + Delta-G solvation = -24.109773 kcal Electronic energy + Delta-G solvation = -31609.336108 eV Core-core repulsion = 27536.366186 eV Total energy + Delta-G solvation = -4072.969923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.93282 -37.88977 -36.73096 -36.32498 -35.32940 -34.42165 -33.04736 -32.48267 -31.74336 -29.99933 -28.75669 -28.42716 -26.10204 -25.78868 -25.12154 -22.52621 -21.34301 -20.72241 -20.18398 -19.00982 -17.65740 -17.53859 -17.38634 -16.97939 -16.44692 -16.00973 -15.25307 -14.91400 -14.47808 -14.31607 -13.94766 -13.62995 -13.57610 -13.43327 -13.36215 -13.18718 -13.06948 -12.67748 -12.54502 -12.49119 -12.37051 -12.05050 -11.98212 -11.89260 -11.85260 -11.60723 -11.43578 -11.25878 -11.17454 -11.14702 -10.95467 -10.88068 -10.59847 -10.38552 -9.86832 -9.84265 -9.64663 -9.34432 -9.17388 -8.63857 -8.09823 -6.17442 -4.17926 1.04438 1.43979 2.15860 3.03954 3.25157 3.32668 3.38085 3.40840 3.98394 4.14448 4.35946 4.37472 4.45410 4.73814 4.77466 4.89084 4.92517 5.08647 5.15810 5.22082 5.24725 5.28625 5.39690 5.42833 5.46206 5.56228 5.62441 5.67997 5.76776 5.79522 5.85276 5.96476 6.08499 6.12175 6.15198 6.22521 6.33780 6.37072 6.51162 6.56319 6.86220 6.99322 7.18610 7.47442 7.63176 8.27359 8.42562 8.87512 9.43957 10.94698 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.005403 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.775724 B = 5180.633696 C = 5881.821456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C 0.237 3.763 4 H 0.101 0.899 5 N -1.127 6.127 6 S 2.768 3.232 7 O -0.987 6.987 8 O -0.976 6.976 9 N -0.981 5.981 10 C 0.108 3.892 11 C 0.239 3.761 12 H 0.055 0.945 13 C -0.143 4.143 14 C -0.516 4.516 15 H 0.082 0.918 16 C 0.078 3.922 17 N -0.889 5.889 18 Si 0.866 3.134 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.263 1.263 22 C -0.212 4.212 23 C 0.034 3.966 24 C -0.081 4.081 25 N -0.365 5.365 26 O 0.096 5.904 27 C -0.013 4.013 28 C -0.082 4.082 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.409 0.591 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.022 0.978 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.266 0.734 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.387 -20.305 4.689 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C 0.129 3.871 4 H 0.119 0.881 5 N -0.884 5.884 6 S 2.777 3.223 7 O -0.970 6.970 8 O -0.960 6.960 9 N -0.823 5.823 10 C -0.038 4.038 11 C 0.136 3.864 12 H 0.073 0.927 13 C -0.203 4.203 14 C -0.556 4.556 15 H 0.100 0.900 16 C -0.126 4.126 17 N -0.526 5.526 18 Si 0.692 3.308 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.187 1.187 22 C -0.217 4.217 23 C -0.125 4.125 24 C -0.139 4.139 25 N -0.071 5.071 26 O 0.032 5.968 27 C -0.077 4.077 28 C -0.139 4.139 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.243 0.757 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.111 0.889 46 H 0.103 0.897 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.579 -19.750 5.074 20.554 hybrid contribution 0.167 -0.303 -1.350 1.394 sum 2.746 -20.052 3.724 20.579 Atomic orbital electron populations 1.21769 0.94538 1.01523 1.03165 1.21841 0.96901 0.94736 1.02754 1.18844 0.86457 0.94992 0.86839 0.88110 1.56537 1.76501 1.42517 1.12870 1.02452 0.73936 0.72385 0.73490 1.93556 1.50960 1.85945 1.66525 1.93609 1.85481 1.81039 1.35827 1.57839 1.58546 1.50985 1.14969 1.21231 1.02875 0.99815 0.79877 1.19050 0.85568 0.91990 0.89822 0.92740 1.22220 0.98755 0.97676 1.01660 1.21131 1.45226 0.89594 0.99623 0.90030 1.24981 0.94291 0.94798 0.98547 1.69881 1.47633 1.02995 1.32073 0.87026 0.79962 0.78893 0.84881 1.19217 1.21143 1.18724 1.21246 0.97842 1.09205 0.93437 1.23321 0.88760 1.01864 0.98583 1.20258 1.02033 1.02049 0.89536 1.73834 1.20691 1.17940 0.94632 1.84797 1.29976 1.63569 1.18483 1.24088 0.84160 1.01582 0.97851 1.20474 1.03340 1.02886 0.87238 0.91751 0.92420 0.92640 0.91344 0.90784 0.75727 0.92593 0.93521 0.91122 0.95924 0.92839 0.92973 0.92357 0.90194 0.90206 0.89856 0.88918 0.89714 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.74 37.16 0.36 -1.10 16 2 C -0.12 -1.07 5.59 -26.73 -0.15 -1.22 16 3 C 0.24 2.63 2.61 -69.07 -0.18 2.45 16 4 H 0.10 1.14 5.39 -51.93 -0.28 0.86 16 5 N -1.13 -14.58 4.71 -5.87 -0.03 -14.60 16 6 S 2.77 50.71 5.97 -107.50 -0.64 50.07 16 7 O -0.99 -18.92 16.75 -57.17 -0.96 -19.87 16 8 O -0.98 -21.63 16.70 -57.17 -0.95 -22.58 16 9 N -0.98 -19.13 3.12 -115.85 -0.36 -19.49 16 10 C 0.11 1.81 9.38 59.85 0.56 2.37 16 11 C 0.24 5.42 2.18 -69.08 -0.15 5.27 16 12 H 0.05 1.31 4.23 -51.93 -0.22 1.09 16 13 C -0.14 -2.89 8.96 37.16 0.33 -2.56 16 14 C -0.52 -13.96 8.83 -34.44 -0.30 -14.26 16 15 H 0.08 2.36 7.66 -52.49 -0.40 1.96 16 16 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 17 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 18 Si 0.87 21.50 26.66 -169.99 -4.53 16.97 16 19 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.26 -6.05 6.31 56.52 0.36 -5.69 16 22 C -0.21 -2.47 5.25 -104.42 -0.55 -3.02 16 23 C 0.03 0.43 7.33 -82.10 -0.60 -0.17 16 24 C -0.08 -0.79 10.34 36.00 0.37 -0.42 16 25 N -0.36 -5.16 12.07 33.42 0.40 -4.76 16 26 O 0.10 1.28 11.20 17.16 0.19 1.47 16 27 C -0.01 -0.14 7.44 -35.30 -0.26 -0.41 16 28 C -0.08 -0.65 9.03 36.01 0.33 -0.33 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.61 7.89 -51.93 -0.41 0.20 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.51 6.81 -51.93 -0.35 0.15 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.41 4.40 6.84 -34.48 -0.24 4.16 16 35 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 36 H 0.05 0.62 5.25 -51.93 -0.27 0.35 16 37 H 0.07 1.13 6.53 -51.93 -0.34 0.79 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 1.11 7.36 -51.93 -0.38 0.73 16 40 H 0.05 1.02 6.87 -51.93 -0.36 0.66 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.74 6.33 -51.93 -0.33 0.42 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.09 0.56 5.86 -51.93 -0.30 0.26 16 LS Contribution 382.42 15.07 5.76 5.76 Total: -1.00 -34.47 382.42 -7.55 -42.02 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.87 Total: 2.13 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -0.34 Total: -11.28 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: 0.79 Total: -64.69 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -1.72 Total: -40.99 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.53 Total: 16.97 kcal Atomic # 16 Polarization: 50.71 SS G_CDS: -0.64 Total: 50.07 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.47 -7.55 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330422012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.913 kcal (2) G-P(sol) polarization free energy of solvation -34.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds