Wall clock time and date at job start Wed Apr 1 2020 03:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46942 * 2 1 4 4 H 1.08998 * 109.47208 * 55.19003 * 3 2 1 5 5 N 1.46503 * 109.47112 * 295.18325 * 3 2 1 6 6 S 1.65598 * 119.99848 * 125.93911 * 5 3 2 7 7 O 1.42101 * 106.40262 * 310.31336 * 6 5 3 8 8 O 1.42101 * 106.40219 * 177.39046 * 6 5 3 9 9 N 1.65599 * 107.21640 * 63.85119 * 6 5 3 10 10 C 1.46497 * 120.00359 * 270.00233 * 9 6 5 11 11 C 1.46507 * 119.99799 * 89.99991 * 9 6 5 12 12 H 1.08997 * 109.47185 * 359.97438 * 11 9 6 13 13 C 1.52999 * 109.47221 * 239.99683 * 11 9 6 14 14 C 1.50700 * 109.47163 * 120.00085 * 11 9 6 15 15 H 1.07997 * 120.00069 * 33.79840 * 14 11 9 16 16 C 1.37873 * 120.00071 * 213.80892 * 14 11 9 17 17 N 1.31517 * 120.00230 * 180.87741 * 16 14 11 18 18 Si 1.86804 * 119.99885 * 0.87643 * 16 14 11 19 19 H 1.48492 * 109.47197 * 89.49918 * 18 16 14 20 20 H 1.48505 * 109.46958 * 209.49624 * 18 16 14 21 21 H 1.48495 * 109.46962 * 329.49213 * 18 16 14 22 22 C 1.50707 * 109.46929 * 175.18567 * 3 2 1 23 23 C 1.41376 * 128.00542 * 255.00110 * 22 3 2 24 24 C 1.50693 * 126.80303 * 359.97438 * 23 22 3 25 25 N 1.30175 * 106.39289 * 179.97438 * 23 22 3 26 26 O 1.20925 * 111.60960 * 359.97438 * 25 23 22 27 27 C 1.34045 * 111.56117 * 359.76494 * 26 25 23 28 28 C 1.50706 * 126.77430 * 180.28881 * 27 26 25 29 29 H 1.09001 * 109.46822 * 305.20558 * 1 2 3 30 30 H 1.08993 * 109.46939 * 65.20217 * 1 2 3 31 31 H 1.09000 * 109.47007 * 185.20653 * 1 2 3 32 32 H 1.09003 * 109.47128 * 239.99941 * 2 1 3 33 33 H 1.09002 * 109.47199 * 120.00069 * 2 1 3 34 34 H 0.97002 * 119.99613 * 305.94402 * 5 3 2 35 35 H 1.09008 * 109.46532 * 270.00246 * 10 9 6 36 36 H 1.09001 * 109.47222 * 29.99496 * 10 9 6 37 37 H 1.08998 * 109.47514 * 150.00189 * 10 9 6 38 38 H 1.09006 * 109.46761 * 55.19910 * 13 11 9 39 39 H 1.08991 * 109.47348 * 175.19783 * 13 11 9 40 40 H 1.09001 * 109.47383 * 295.19908 * 13 11 9 41 41 H 0.96996 * 120.00195 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.47347 * 90.00570 * 24 23 22 43 43 H 1.09004 * 109.47226 * 210.00061 * 24 23 22 44 44 H 1.08998 * 109.47313 * 330.00126 * 24 23 22 45 45 H 1.08995 * 109.46918 * 270.10526 * 28 27 26 46 46 H 1.09003 * 109.46953 * 30.11227 * 28 27 26 47 47 H 1.08997 * 109.46634 * 150.10645 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6080 1.9807 0.8437 5 7 1.6486 2.0989 -1.2500 6 16 0.8138 3.5284 -1.2084 7 8 -0.2706 3.3339 -0.3109 8 8 0.6414 3.9319 -2.5600 9 7 1.8049 4.6546 -0.5070 10 6 1.7805 4.8492 0.9447 11 6 2.7063 5.4562 -1.3385 12 1 2.5850 5.1725 -2.3838 13 6 4.1533 5.2081 -0.9078 14 6 2.3764 6.9173 -1.1725 15 1 2.0277 7.2873 -0.2197 16 6 2.5195 7.7816 -2.2371 17 7 2.2481 9.0598 -2.0876 18 14 3.0989 7.1372 -3.8920 19 1 1.9248 6.7166 -4.6980 20 1 3.8343 8.2087 -4.6105 21 1 3.9982 5.9741 -3.6829 22 6 3.5423 1.4442 0.1193 23 6 4.3253 1.7635 1.2523 24 6 3.8209 2.1791 2.6101 25 7 5.5682 1.6273 0.8902 26 8 5.6602 1.2810 -0.2648 27 6 4.4548 1.1339 -0.8324 28 6 4.1711 0.7097 -2.2504 29 1 -0.3633 0.5925 0.8397 30 1 -0.3633 0.4310 -0.9329 31 1 -0.3633 -1.0234 0.0933 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8785 1.6960 -2.1019 35 1 1.0413 5.6097 1.1969 36 1 1.5171 3.9107 1.4328 37 1 2.7645 5.1720 1.2848 38 1 4.3657 4.1397 -0.9466 39 1 4.8283 5.7374 -1.5801 40 1 4.2966 5.5703 0.1103 41 1 2.3491 9.6679 -2.8365 42 1 3.6769 1.2946 3.2306 43 1 4.5490 2.8390 3.0819 44 1 2.8721 2.7043 2.5002 45 1 4.1250 1.5905 -2.8908 46 1 4.9654 0.0489 -2.5978 47 1 3.2177 0.1828 -2.2881 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330422012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:37 Heat of formation + Delta-G solvation = -49.529380 kcal Electronic energy + Delta-G solvation = -31610.438385 eV Core-core repulsion = 27536.366186 eV Total energy + Delta-G solvation = -4074.072200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.84220 -38.87250 -38.29514 -37.94299 -36.90055 -35.30391 -34.51768 -33.83774 -32.67253 -31.73191 -29.56654 -29.19522 -27.41132 -27.08362 -26.82739 -23.32891 -22.53483 -22.13290 -21.08582 -20.36861 -19.28504 -18.90277 -18.57523 -18.21574 -17.88861 -17.29811 -16.70950 -16.03780 -15.75481 -15.44249 -15.18833 -14.90723 -14.64742 -14.54430 -14.43153 -14.26168 -14.14998 -13.96764 -13.78407 -13.53009 -13.48695 -13.33714 -13.23842 -13.16628 -13.08294 -13.01632 -12.97434 -12.76938 -12.60988 -12.40954 -12.10154 -12.04497 -11.96429 -11.79084 -11.66131 -11.27654 -10.83509 -10.75990 -10.66684 -10.05078 -9.71396 -8.33330 -6.37126 -0.40059 0.56851 1.25835 1.29107 1.37622 1.39825 1.96891 2.26167 2.30600 2.59760 3.05860 3.28682 3.37350 3.59678 3.62403 3.85610 3.96750 4.11256 4.18199 4.28326 4.40631 4.45156 4.58925 4.63546 4.66417 4.68650 4.72363 4.75471 4.77185 4.83525 4.84818 4.89840 4.96138 4.99408 5.07427 5.12871 5.19584 5.27443 5.31946 5.37368 5.48485 5.51497 5.53856 5.84879 6.09711 6.31611 6.69563 7.28553 7.39078 8.82643 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.005403 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.775724 B = 5180.633696 C = 5881.821456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C 0.235 3.765 4 H 0.100 0.900 5 N -1.108 6.108 6 S 2.786 3.214 7 O -0.997 6.997 8 O -1.016 7.016 9 N -0.992 5.992 10 C 0.103 3.897 11 C 0.245 3.755 12 H 0.047 0.953 13 C -0.132 4.132 14 C -0.517 4.517 15 H 0.049 0.951 16 C 0.021 3.979 17 N -0.938 5.938 18 Si 0.912 3.088 19 H -0.278 1.278 20 H -0.278 1.278 21 H -0.232 1.232 22 C -0.221 4.221 23 C 0.030 3.970 24 C -0.085 4.085 25 N -0.395 5.395 26 O 0.080 5.920 27 C -0.009 4.009 28 C -0.088 4.088 29 H 0.051 0.949 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.423 0.577 35 H 0.037 0.963 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.267 0.733 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 -23.633 4.562 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C 0.127 3.873 4 H 0.117 0.883 5 N -0.871 5.871 6 S 2.795 3.205 7 O -0.980 6.980 8 O -1.000 7.000 9 N -0.833 5.833 10 C -0.042 4.042 11 C 0.140 3.860 12 H 0.064 0.936 13 C -0.192 4.192 14 C -0.557 4.557 15 H 0.067 0.933 16 C -0.178 4.178 17 N -0.578 5.578 18 Si 0.736 3.264 19 H -0.203 1.203 20 H -0.204 1.204 21 H -0.155 1.155 22 C -0.227 4.227 23 C -0.129 4.129 24 C -0.142 4.142 25 N -0.105 5.105 26 O 0.019 5.981 27 C -0.073 4.073 28 C -0.145 4.145 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.260 0.740 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.123 0.877 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.260 -23.089 4.946 23.837 hybrid contribution -0.114 0.615 -1.181 1.336 sum 3.146 -22.474 3.765 23.003 Atomic orbital electron populations 1.21805 0.95208 1.02437 1.01903 1.21834 0.96130 0.93015 1.04543 1.19075 0.86327 0.96363 0.85529 0.88265 1.56016 1.76013 1.40413 1.14622 1.01633 0.73775 0.72901 0.72194 1.93546 1.51542 1.86262 1.66614 1.93555 1.86197 1.82272 1.37942 1.57615 1.58094 1.51780 1.15780 1.21392 1.02818 1.01335 0.78681 1.18801 0.87446 0.89639 0.90115 0.93561 1.22041 0.96519 0.99170 1.01467 1.21426 1.43891 0.92237 0.98108 0.93268 1.25745 0.94985 0.94935 1.02114 1.70009 1.50311 1.04353 1.33148 0.86262 0.79782 0.79644 0.80687 1.20335 1.20396 1.15457 1.21267 0.97868 1.10074 0.93499 1.23773 0.88505 1.00935 0.99692 1.20401 1.02077 1.03054 0.88701 1.73842 1.21734 1.19612 0.95263 1.84768 1.30914 1.63955 1.18445 1.24695 0.83460 1.00198 0.98944 1.20717 1.05234 1.03427 0.85150 0.92955 0.93766 0.90729 0.89443 0.89111 0.74027 0.94460 0.89848 0.90535 0.93474 0.93462 0.92816 0.92407 0.88062 0.90497 0.89156 0.89051 0.87704 0.87018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.74 71.98 0.70 -1.80 16 2 C -0.12 -1.56 5.59 30.60 0.17 -1.39 16 3 C 0.23 4.43 2.61 44.25 0.12 4.55 16 4 H 0.10 1.93 5.39 -2.39 -0.01 1.92 16 5 N -1.11 -25.50 4.71 -172.50 -0.81 -26.31 16 6 S 2.79 97.90 5.97 -56.49 -0.34 97.57 16 7 O -1.00 -36.80 16.75 -128.00 -2.14 -38.95 16 8 O -1.02 -44.10 16.70 -128.00 -2.14 -46.24 16 9 N -0.99 -37.63 3.12 -520.43 -1.62 -39.26 16 10 C 0.10 3.35 9.38 127.77 1.20 4.55 16 11 C 0.24 10.90 2.18 44.24 0.10 11.00 16 12 H 0.05 2.16 4.23 -2.39 -0.01 2.15 16 13 C -0.13 -5.10 8.96 71.98 0.64 -4.46 16 14 C -0.52 -28.50 8.83 25.60 0.23 -28.27 16 15 H 0.05 2.96 7.66 -2.91 -0.02 2.94 16 16 C 0.02 1.23 5.47 84.65 0.46 1.70 16 17 N -0.94 -58.07 13.96 21.45 0.30 -57.77 16 18 Si 0.91 44.13 26.66 68.60 1.83 45.96 16 19 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 21 H -0.23 -9.92 6.31 99.48 0.63 -9.30 16 22 C -0.22 -4.47 5.25 -19.73 -0.10 -4.57 16 23 C 0.03 0.68 7.33 43.57 0.32 1.00 16 24 C -0.09 -1.43 10.34 71.23 0.74 -0.70 16 25 N -0.40 -10.45 12.07 -49.54 -0.60 -11.05 16 26 O 0.08 1.97 11.20 71.58 0.80 2.77 16 27 C -0.01 -0.17 7.44 25.04 0.19 0.01 16 28 C -0.09 -1.07 9.03 71.24 0.64 -0.43 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.04 0.82 7.89 -2.39 -0.02 0.80 16 31 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 0.87 6.81 -2.39 -0.02 0.86 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.42 7.67 6.84 -96.74 -0.66 7.01 16 35 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.08 2.05 5.25 -2.39 -0.01 2.04 16 37 H 0.08 2.38 6.53 -2.39 -0.02 2.36 16 38 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.05 1.87 7.36 -2.39 -0.02 1.85 16 40 H 0.05 2.03 6.87 -2.39 -0.02 2.01 16 41 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 42 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.09 1.36 6.33 -2.39 -0.02 1.35 16 45 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.11 0.87 5.86 -2.39 -0.01 0.86 16 Total: -1.00 -76.60 382.42 0.94 -75.66 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.26 Total: 16.45 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 5.40 Total: -18.82 kcal Atomic # 7 Polarization: -131.66 SS G_CDS: -2.73 Total: -134.39 kcal Atomic # 8 Polarization: -78.94 SS G_CDS: -3.48 Total: -82.42 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.83 Total: 45.96 kcal Atomic # 16 Polarization: 97.90 SS G_CDS: -0.34 Total: 97.57 kcal Total: -76.60 0.94 -75.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330422012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.131 kcal (2) G-P(sol) polarization free energy of solvation -76.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds