Wall clock time and date at job start Wed Apr 1 2020 02:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46977 * 2 1 4 4 C 1.53002 * 109.47226 * 240.00212 * 2 1 3 5 5 C 1.50710 * 109.46800 * 59.99834 * 4 2 1 6 6 H 1.07993 * 119.99840 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99624 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99832 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47099 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47403 * 120.00343 * 9 7 5 12 12 H 1.48504 * 109.47425 * 240.00436 * 9 7 5 13 13 C 1.52997 * 109.47548 * 120.00345 * 2 1 3 14 14 N 1.46505 * 109.46927 * 300.00408 * 13 2 1 15 15 C 1.34776 * 119.99901 * 179.97438 * 14 13 2 16 16 O 1.21577 * 120.00400 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99743 * 179.97438 * 15 14 13 18 18 C 1.39438 * 119.99818 * 185.32236 * 17 15 14 19 19 C 1.38962 * 119.85464 * 33.65072 * 18 17 15 20 20 C 1.38267 * 120.40409 * 179.97438 * 19 18 17 21 21 C 1.38800 * 119.82778 * 0.02562 * 20 19 18 22 22 C 1.41096 * 119.92402 * 0.02562 * 21 20 19 23 23 C 1.38304 * 119.90041 * 359.97438 * 22 21 20 24 24 C 1.47867 * 105.84404 * 179.97438 * 22 21 20 25 25 O 1.21446 * 125.74096 * 180.02562 * 24 22 21 26 26 N 1.34525 * 108.51500 * 359.97247 * 24 22 21 27 27 C 1.34503 * 111.09961 * 0.02562 * 26 24 22 28 28 O 1.21484 * 125.66769 * 179.97438 * 27 26 24 29 29 H 1.08993 * 109.47264 * 299.99449 * 1 2 3 30 30 H 1.09000 * 109.47269 * 59.99769 * 1 2 3 31 31 H 1.09007 * 109.46808 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47239 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47310 * 300.00205 * 3 2 1 34 34 H 1.09007 * 109.46637 * 60.00394 * 3 2 1 35 35 H 1.09002 * 109.47056 * 179.97438 * 4 2 1 36 36 H 1.08994 * 109.47357 * 299.99902 * 4 2 1 37 37 H 0.96994 * 119.99773 * 179.97438 * 8 7 5 38 38 H 1.08996 * 109.47683 * 180.02562 * 13 2 1 39 39 H 1.09002 * 109.46864 * 59.99822 * 13 2 1 40 40 H 0.96998 * 120.00107 * 359.97438 * 14 13 2 41 41 H 0.96995 * 119.99863 * 5.33214 * 17 15 14 42 42 H 1.08001 * 119.79985 * 0.02562 * 19 18 17 43 43 H 1.08006 * 120.08739 * 179.72269 * 20 19 18 44 44 H 1.07998 * 120.17519 * 180.02562 * 23 22 21 45 45 H 0.97003 * 124.44484 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4798 6 1 0.9170 0.8676 -2.3806 7 6 1.8711 -0.4814 -3.7320 8 7 2.6273 -1.5507 -3.8528 9 14 1.2490 0.3996 -5.2572 10 1 0.4244 1.5666 -4.8529 11 1 2.4043 0.8665 -6.0650 12 1 0.4242 -0.5334 -6.0661 13 6 2.0401 -0.7213 1.2491 14 7 1.5517 -0.0308 2.4454 15 6 1.8769 -0.4916 3.6695 16 8 2.5752 -1.4805 3.7810 17 7 1.4280 0.1440 4.7700 18 6 1.8535 -0.2647 6.0334 19 6 3.1413 -0.7586 6.2034 20 6 3.5752 -1.1665 7.4512 21 6 2.7197 -1.0829 8.5410 22 6 1.4112 -0.5829 8.3719 23 6 0.9846 -0.1769 7.1206 24 6 0.7843 -0.6318 9.7103 25 8 -0.3483 -0.2833 9.9763 26 7 1.6793 -1.1283 10.5833 27 6 2.8422 -1.4178 9.9727 28 8 3.8293 -1.8783 10.5106 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8901 35 1 3.1300 -0.7208 -1.2495 36 1 1.6768 -1.7488 -1.2493 37 1 2.8616 -1.8820 -4.7337 38 1 3.1300 -0.7209 1.2494 39 1 1.6767 -1.7490 1.2491 40 1 0.9943 0.7580 2.3565 41 1 0.8089 0.8856 4.6830 42 1 3.8075 -0.8234 5.3558 43 1 4.5756 -1.5537 7.5766 44 1 -0.0159 0.2068 6.9862 45 1 1.5083 -1.2601 11.5290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342622411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:56 Heat of formation + Delta-G solvation = -57.686609 kcal Electronic energy + Delta-G solvation = -28778.780314 eV Core-core repulsion = 24568.910439 eV Total energy + Delta-G solvation = -4209.869875 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.61743 -40.83903 -39.03753 -38.74208 -37.33895 -36.15655 -34.85280 -33.83285 -32.20680 -31.61723 -30.23231 -27.21710 -26.62342 -26.41366 -25.44160 -24.44546 -23.30162 -22.38532 -21.28166 -20.57997 -19.15620 -18.71095 -18.20324 -17.86162 -17.20002 -16.81631 -16.40196 -16.00255 -15.88309 -15.48968 -15.09452 -14.94603 -14.52377 -14.45586 -14.42463 -14.30003 -13.89411 -13.49371 -13.22844 -13.20299 -12.87307 -12.36327 -12.33568 -12.13794 -11.32056 -11.13333 -11.09785 -10.92792 -10.90593 -10.84871 -10.81333 -10.73002 -10.51786 -10.37644 -10.32131 -9.98837 -9.64902 -9.31341 -9.07399 -9.00506 -8.60922 -8.42549 -6.06406 -4.08032 -0.37166 0.52646 1.56608 2.10252 2.32184 2.51862 2.87281 3.25708 3.26956 3.31226 3.34303 3.35942 3.86845 3.95853 4.15831 4.39799 4.54165 4.73162 4.87110 5.19547 5.29175 5.31741 5.33737 5.47782 5.50249 5.56106 5.61632 5.68684 5.89575 6.00624 6.04247 6.06758 6.10630 6.26743 6.36174 6.36728 6.52668 6.56863 6.65120 6.72904 6.94912 6.97431 7.01957 7.30304 7.56096 7.67347 7.71891 7.91796 8.29844 8.34152 8.96876 9.55594 11.04953 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.032309 B = 0.001732 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.431240 B =16166.919393 C =16707.535468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.144 3.856 14 N -0.725 5.725 15 C 0.698 3.302 16 O -0.570 6.570 17 N -0.688 5.688 18 C 0.207 3.793 19 C -0.103 4.103 20 C -0.015 4.015 21 C -0.173 4.173 22 C -0.121 4.121 23 C -0.076 4.076 24 C 0.582 3.418 25 O -0.465 6.465 26 N -0.681 5.681 27 C 0.582 3.418 28 O -0.467 6.467 29 H 0.028 0.972 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.028 0.972 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.260 0.740 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.398 0.602 41 H 0.412 0.588 42 H 0.157 0.843 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.587 5.384 24.685 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.021 3.979 14 N -0.380 5.380 15 C 0.399 3.601 16 O -0.446 6.446 17 N -0.335 5.335 18 C 0.109 3.891 19 C -0.124 4.124 20 C -0.034 4.034 21 C -0.177 4.177 22 C -0.125 4.125 23 C -0.098 4.098 24 C 0.370 3.630 25 O -0.336 6.336 26 N -0.348 5.348 27 C 0.371 3.629 28 O -0.339 6.339 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.233 0.767 41 H 0.248 0.752 42 H 0.175 0.825 43 H 0.164 0.836 44 H 0.163 0.837 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -1.925 4.329 24.808 25.256 hybrid contribution -1.038 1.025 -0.590 1.574 sum -2.963 5.354 24.218 24.979 Atomic orbital electron populations 1.21770 0.95195 1.01264 1.00260 1.20935 0.95544 0.95924 0.94912 1.21769 1.00625 0.95805 1.00261 1.19098 0.96429 0.95265 0.89361 1.21201 1.31272 1.12120 0.90466 0.92186 1.25021 0.95286 0.95084 0.99148 1.69968 1.36861 1.22992 1.23424 0.86585 0.78611 0.79661 0.83403 1.19811 1.21122 1.21119 1.21639 0.98966 0.95839 0.81453 1.45443 1.55403 1.32844 1.04267 1.15979 0.80833 0.82816 0.80491 1.90967 1.41873 1.26365 1.85412 1.42677 1.50386 1.37105 1.03356 1.17529 0.92073 0.95664 0.83849 1.21525 0.94525 0.98413 0.97909 1.20651 0.99389 0.93964 0.89423 1.20353 0.96241 1.07082 0.94064 1.20078 0.95289 1.03430 0.93718 1.20363 0.99460 1.00458 0.89513 1.18273 0.84034 0.75266 0.85401 1.90858 1.16517 1.43715 1.82538 1.44433 1.15207 1.61257 1.13886 1.18252 0.81696 0.75851 0.87128 1.90862 1.31256 1.39515 1.72237 0.95340 0.91322 0.93260 0.93256 0.91329 0.95338 0.96245 0.96251 0.93033 0.91494 0.91533 0.76678 0.75213 0.82502 0.83601 0.83671 0.72923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.05 37.16 0.30 -1.71 16 2 C -0.07 -1.24 0.54 -154.51 -0.08 -1.32 16 3 C -0.13 -1.99 8.05 37.16 0.30 -1.69 16 4 C 0.04 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -12.98 7.65 -34.43 -0.26 -13.24 16 6 H 0.06 1.46 5.68 -52.49 -0.30 1.16 16 7 C 0.06 1.50 5.46 -17.82 -0.10 1.41 16 8 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 9 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.14 2.22 4.56 -4.04 -0.02 2.20 16 14 N -0.73 -8.48 4.96 -65.23 -0.32 -8.81 16 15 C 0.70 8.43 8.28 -86.91 -0.72 7.71 16 16 O -0.57 -9.01 14.02 5.30 0.07 -8.93 16 17 N -0.69 -5.62 5.32 -14.18 -0.08 -5.70 16 18 C 0.21 1.78 6.28 -83.68 -0.53 1.26 16 19 C -0.10 -0.95 8.63 -39.30 -0.34 -1.29 16 20 C -0.01 -0.12 10.08 -39.36 -0.40 -0.52 16 21 C -0.17 -1.48 6.40 -104.81 -0.67 -2.15 16 22 C -0.12 -1.00 6.40 -104.85 -0.67 -1.67 16 23 C -0.08 -0.57 10.01 -39.10 -0.39 -0.96 16 24 C 0.58 4.98 8.46 -12.43 -0.11 4.88 16 25 O -0.47 -5.08 18.04 5.41 0.10 -4.98 16 26 N -0.68 -4.76 5.76 -13.31 -0.08 -4.84 16 27 C 0.58 5.15 8.44 -12.59 -0.11 5.04 16 28 O -0.47 -5.32 18.04 5.38 0.10 -5.23 16 29 H 0.03 0.35 6.86 -51.93 -0.36 -0.01 16 30 H 0.07 1.19 6.62 -51.93 -0.34 0.85 16 31 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.19 6.62 -51.93 -0.34 0.84 16 34 H 0.03 0.34 6.86 -51.93 -0.36 -0.01 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.40 3.68 6.18 -40.82 -0.25 3.42 16 41 H 0.41 1.97 8.83 -40.82 -0.36 1.61 16 42 H 0.16 1.65 6.40 -52.49 -0.34 1.32 16 43 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 45 H 0.43 1.95 8.96 -40.82 -0.37 1.59 16 LS Contribution 377.90 15.07 5.69 5.69 Total: -1.00 -32.69 377.90 -8.23 -40.92 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.53 Total: 2.57 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -3.90 Total: -1.36 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.26 Total: -44.19 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.27 Total: -19.15 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.69 -8.23 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342622411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.768 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds