Wall clock time and date at job start Wed Apr 1 2020 02:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46977 * 2 1 4 4 C 1.53002 * 109.47226 * 240.00212 * 2 1 3 5 5 C 1.50710 * 109.46800 * 59.99834 * 4 2 1 6 6 H 1.07993 * 119.99840 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99624 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99832 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47099 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47403 * 120.00343 * 9 7 5 12 12 H 1.48504 * 109.47425 * 240.00436 * 9 7 5 13 13 C 1.52997 * 109.47548 * 120.00345 * 2 1 3 14 14 N 1.46505 * 109.46927 * 300.00408 * 13 2 1 15 15 C 1.34776 * 119.99901 * 179.97438 * 14 13 2 16 16 O 1.21577 * 120.00400 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99743 * 179.97438 * 15 14 13 18 18 C 1.39438 * 119.99818 * 185.32236 * 17 15 14 19 19 C 1.38962 * 119.85464 * 33.65072 * 18 17 15 20 20 C 1.38267 * 120.40409 * 179.97438 * 19 18 17 21 21 C 1.38800 * 119.82778 * 0.02562 * 20 19 18 22 22 C 1.41096 * 119.92402 * 0.02562 * 21 20 19 23 23 C 1.38304 * 119.90041 * 359.97438 * 22 21 20 24 24 C 1.47867 * 105.84404 * 179.97438 * 22 21 20 25 25 O 1.21446 * 125.74096 * 180.02562 * 24 22 21 26 26 N 1.34525 * 108.51500 * 359.97247 * 24 22 21 27 27 C 1.34503 * 111.09961 * 0.02562 * 26 24 22 28 28 O 1.21484 * 125.66769 * 179.97438 * 27 26 24 29 29 H 1.08993 * 109.47264 * 299.99449 * 1 2 3 30 30 H 1.09000 * 109.47269 * 59.99769 * 1 2 3 31 31 H 1.09007 * 109.46808 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47239 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47310 * 300.00205 * 3 2 1 34 34 H 1.09007 * 109.46637 * 60.00394 * 3 2 1 35 35 H 1.09002 * 109.47056 * 179.97438 * 4 2 1 36 36 H 1.08994 * 109.47357 * 299.99902 * 4 2 1 37 37 H 0.96994 * 119.99773 * 179.97438 * 8 7 5 38 38 H 1.08996 * 109.47683 * 180.02562 * 13 2 1 39 39 H 1.09002 * 109.46864 * 59.99822 * 13 2 1 40 40 H 0.96998 * 120.00107 * 359.97438 * 14 13 2 41 41 H 0.96995 * 119.99863 * 5.33214 * 17 15 14 42 42 H 1.08001 * 119.79985 * 0.02562 * 19 18 17 43 43 H 1.08006 * 120.08739 * 179.72269 * 20 19 18 44 44 H 1.07998 * 120.17519 * 180.02562 * 23 22 21 45 45 H 0.97003 * 124.44484 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4798 6 1 0.9170 0.8676 -2.3806 7 6 1.8711 -0.4814 -3.7320 8 7 2.6273 -1.5507 -3.8528 9 14 1.2490 0.3996 -5.2572 10 1 0.4244 1.5666 -4.8529 11 1 2.4043 0.8665 -6.0650 12 1 0.4242 -0.5334 -6.0661 13 6 2.0401 -0.7213 1.2491 14 7 1.5517 -0.0308 2.4454 15 6 1.8769 -0.4916 3.6695 16 8 2.5752 -1.4805 3.7810 17 7 1.4280 0.1440 4.7700 18 6 1.8535 -0.2647 6.0334 19 6 3.1413 -0.7586 6.2034 20 6 3.5752 -1.1665 7.4512 21 6 2.7197 -1.0829 8.5410 22 6 1.4112 -0.5829 8.3719 23 6 0.9846 -0.1769 7.1206 24 6 0.7843 -0.6318 9.7103 25 8 -0.3483 -0.2833 9.9763 26 7 1.6793 -1.1283 10.5833 27 6 2.8422 -1.4178 9.9727 28 8 3.8293 -1.8783 10.5106 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8901 35 1 3.1300 -0.7208 -1.2495 36 1 1.6768 -1.7488 -1.2493 37 1 2.8616 -1.8820 -4.7337 38 1 3.1300 -0.7209 1.2494 39 1 1.6767 -1.7490 1.2491 40 1 0.9943 0.7580 2.3565 41 1 0.8089 0.8856 4.6830 42 1 3.8075 -0.8234 5.3558 43 1 4.5756 -1.5537 7.5766 44 1 -0.0159 0.2068 6.9862 45 1 1.5083 -1.2601 11.5290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342622411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:55 Heat of formation + Delta-G solvation = -81.441681 kcal Electronic energy + Delta-G solvation = -28779.810411 eV Core-core repulsion = 24568.910439 eV Total energy + Delta-G solvation = -4210.899972 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.30912 -41.74380 -39.80490 -39.64916 -38.57630 -36.94717 -35.68276 -35.25421 -33.91953 -32.27780 -31.00911 -29.04049 -27.91318 -27.60859 -26.20541 -25.30528 -24.74123 -23.39879 -22.09687 -21.37026 -20.22270 -19.57052 -18.99841 -18.89686 -18.33807 -17.97723 -17.51966 -16.88905 -16.74251 -16.56418 -16.27800 -15.96980 -15.72845 -15.48349 -15.20935 -15.12786 -15.06656 -14.67554 -14.34787 -14.23215 -14.04516 -13.90516 -13.69769 -13.04692 -12.88522 -12.67926 -12.57193 -12.30029 -12.20536 -11.92901 -11.89633 -11.71698 -11.62800 -11.55552 -11.50155 -11.34789 -10.96023 -10.82030 -10.49962 -10.31123 -10.15663 -9.35750 -8.12335 -6.19389 -1.07905 -0.11590 0.84372 1.35552 1.42839 1.44805 1.55399 1.57605 1.83107 1.97500 2.45437 2.56109 2.60382 3.13412 3.18404 3.22694 3.53472 3.88511 3.98972 4.08106 4.13570 4.16674 4.26463 4.62240 4.67610 4.71634 4.77739 4.81346 4.85092 4.95786 5.01215 5.03818 5.12408 5.17532 5.21311 5.32705 5.40204 5.49163 5.55828 5.58457 5.60749 5.65245 5.84630 5.84890 5.93559 6.03088 6.33535 6.66526 6.90421 6.97034 7.39075 7.48403 9.00128 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.032309 B = 0.001732 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.431240 B =16166.919393 C =16707.535468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.064 4.064 3 C -0.122 4.122 4 C 0.038 3.962 5 C -0.511 4.511 6 H 0.073 0.927 7 C -0.007 4.007 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.256 1.256 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.160 3.840 14 N -0.713 5.713 15 C 0.701 3.299 16 O -0.610 6.610 17 N -0.667 5.667 18 C 0.199 3.801 19 C -0.112 4.112 20 C -0.013 4.013 21 C -0.178 4.178 22 C -0.125 4.125 23 C -0.061 4.061 24 C 0.591 3.409 25 O -0.487 6.487 26 N -0.668 5.668 27 C 0.589 3.411 28 O -0.495 6.495 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.073 0.927 35 H -0.012 1.012 36 H -0.013 1.013 37 H 0.259 0.741 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.414 0.586 41 H 0.432 0.568 42 H 0.142 0.858 43 H 0.157 0.843 44 H 0.171 0.829 45 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.489 7.643 26.053 27.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.091 0.909 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.782 3.218 10 H -0.180 1.180 11 H -0.212 1.212 12 H -0.213 1.213 13 C 0.035 3.965 14 N -0.369 5.369 15 C 0.401 3.599 16 O -0.489 6.489 17 N -0.316 5.316 18 C 0.102 3.898 19 C -0.133 4.133 20 C -0.032 4.032 21 C -0.182 4.182 22 C -0.129 4.129 23 C -0.082 4.082 24 C 0.380 3.620 25 O -0.359 6.359 26 N -0.335 5.335 27 C 0.378 3.622 28 O -0.368 6.368 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.006 0.994 36 H 0.005 0.995 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.253 0.747 41 H 0.272 0.728 42 H 0.160 0.840 43 H 0.175 0.825 44 H 0.189 0.811 45 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -3.879 6.654 26.225 27.333 hybrid contribution -0.418 0.295 -0.937 1.067 sum -4.297 6.949 25.288 26.575 Atomic orbital electron populations 1.21711 0.93581 1.01006 1.01727 1.20711 0.96701 0.96345 0.92710 1.21707 1.00007 0.94553 1.01705 1.18986 0.94411 0.94245 0.92289 1.21643 1.30168 1.11989 0.91071 0.90872 1.25936 0.95793 0.95914 1.02702 1.70121 1.38871 1.24988 1.23946 0.85522 0.77991 0.78842 0.79426 1.17982 1.21247 1.21278 1.21138 0.97925 0.95065 0.82322 1.45023 1.55592 1.33080 1.03157 1.16016 0.80346 0.82427 0.81080 1.90958 1.43595 1.28300 1.86025 1.42331 1.50092 1.37104 1.02103 1.17590 0.92056 0.96052 0.84133 1.21478 0.94968 0.99075 0.97776 1.20732 0.99938 0.93532 0.89012 1.20377 0.96574 1.07343 0.93943 1.20132 0.95049 1.03758 0.94007 1.20517 1.00134 0.99059 0.88492 1.18227 0.83631 0.74627 0.85542 1.90857 1.17396 1.44833 1.82858 1.44283 1.14332 1.60407 1.14461 1.18262 0.81558 0.75116 0.87237 1.90856 1.32268 1.40916 1.72749 0.90819 0.92817 0.94445 0.94328 0.92838 0.90841 0.99396 0.99492 0.93264 0.93082 0.93356 0.74745 0.72837 0.83996 0.82543 0.81142 0.71539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.63 8.05 71.98 0.58 -3.05 16 2 C -0.06 -2.15 0.54 -52.18 -0.03 -2.18 16 3 C -0.12 -3.59 8.05 71.98 0.58 -3.01 16 4 C 0.04 1.83 4.04 29.85 0.12 1.95 16 5 C -0.51 -26.14 7.65 25.60 0.20 -25.95 16 6 H 0.07 3.49 5.68 -2.91 -0.02 3.48 16 7 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 8 N -0.94 -55.61 13.29 21.45 0.28 -55.33 16 9 Si 0.96 42.39 29.54 68.60 2.03 44.41 16 10 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 13 C 0.16 4.89 4.56 86.38 0.39 5.28 16 14 N -0.71 -14.98 4.96 -478.54 -2.37 -17.35 16 15 C 0.70 15.60 8.28 179.05 1.48 17.08 16 16 O -0.61 -19.03 14.02 -3.96 -0.06 -19.09 16 17 N -0.67 -8.96 5.32 -317.05 -1.69 -10.64 16 18 C 0.20 2.97 6.28 38.40 0.24 3.21 16 19 C -0.11 -1.96 8.63 22.45 0.19 -1.77 16 20 C -0.01 -0.20 10.08 22.41 0.23 0.03 16 21 C -0.18 -2.79 6.40 -19.99 -0.13 -2.92 16 22 C -0.13 -1.80 6.40 -20.01 -0.13 -1.93 16 23 C -0.06 -0.73 10.01 22.58 0.23 -0.50 16 24 C 0.59 8.96 8.46 86.83 0.73 9.70 16 25 O -0.49 -9.67 18.04 -3.55 -0.06 -9.73 16 26 N -0.67 -8.32 5.76 -432.96 -2.49 -10.81 16 27 C 0.59 9.73 8.44 86.74 0.73 10.46 16 28 O -0.49 -10.93 18.04 -3.67 -0.07 -11.00 16 29 H 0.07 1.50 6.86 -2.39 -0.02 1.48 16 30 H 0.05 1.76 6.62 -2.39 -0.02 1.74 16 31 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.74 6.62 -2.39 -0.02 1.73 16 34 H 0.07 1.49 6.86 -2.38 -0.02 1.47 16 35 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 36 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 37 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.41 5.88 6.18 -92.71 -0.57 5.31 16 41 H 0.43 2.32 8.83 -92.71 -0.82 1.50 16 42 H 0.14 2.99 6.40 -2.91 -0.02 2.97 16 43 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 44 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 45 H 0.44 3.36 8.96 -92.71 -0.83 2.53 16 Total: -1.00 -73.69 377.90 0.32 -73.37 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -1.14 Total: 9.67 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 5.88 Total: 6.50 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -6.27 Total: -94.14 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -0.19 Total: -39.82 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -73.69 0.32 -73.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342622411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.073 kcal (2) G-P(sol) polarization free energy of solvation -73.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds