Wall clock time and date at job start Wed Apr 1 2020 02:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47032 * 2 1 4 4 C 1.53005 * 109.47399 * 240.00075 * 2 1 3 5 5 C 1.50701 * 109.47325 * 119.99792 * 2 1 3 6 6 N 1.30004 * 127.40306 * 240.00761 * 5 2 1 7 7 O 1.20855 * 113.52880 * 179.97438 * 6 5 2 8 8 C 1.34445 * 113.07669 * 359.97438 * 7 6 5 9 9 N 1.32332 * 134.99291 * 180.02562 * 8 7 6 10 10 C 1.31466 * 121.78163 * 179.80304 * 9 8 7 11 11 C 1.40017 * 121.52307 * 0.43838 * 10 9 8 12 12 C 1.47711 * 120.50268 * 179.79386 * 11 10 9 13 13 O 1.21560 * 119.99993 * 353.02023 * 12 11 10 14 14 N 1.34778 * 119.99741 * 173.01842 * 12 11 10 15 15 C 1.47574 * 134.49072 * 174.47509 * 14 12 11 16 16 C 1.53944 * 86.11839 * 155.35943 * 15 14 12 17 17 O 1.42903 * 113.74349 * 269.15657 * 16 15 14 18 18 C 1.50698 * 113.74158 * 137.95374 * 16 15 14 19 19 H 1.08001 * 120.00493 * 1.92369 * 18 16 15 20 20 C 1.37877 * 119.99960 * 181.92844 * 18 16 15 21 21 N 1.31514 * 119.99943 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 120.00116 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47301 * 179.97438 * 22 20 18 24 24 H 1.48498 * 109.47234 * 300.00167 * 22 20 18 25 25 H 1.48505 * 109.46762 * 59.99971 * 22 20 18 26 26 C 1.47807 * 134.45949 * 354.34623 * 14 12 11 27 27 C 1.39910 * 118.99344 * 359.52252 * 11 10 9 28 28 C 1.38659 * 117.70861 * 0.25074 * 27 11 10 29 29 H 1.08996 * 109.47283 * 300.00149 * 1 2 3 30 30 H 1.08997 * 109.47132 * 60.00201 * 1 2 3 31 31 H 1.09005 * 109.46879 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46911 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46998 * 299.99881 * 3 2 1 34 34 H 1.08998 * 109.46709 * 59.99687 * 3 2 1 35 35 H 1.09000 * 109.46505 * 299.99832 * 4 2 1 36 36 H 1.08997 * 109.47204 * 59.99768 * 4 2 1 37 37 H 1.08998 * 109.46750 * 180.02562 * 4 2 1 38 38 H 1.08003 * 119.23916 * 180.23397 * 10 9 8 39 39 H 1.09006 * 113.77239 * 41.06130 * 15 14 12 40 40 H 1.09006 * 113.87809 * 269.67622 * 15 14 12 41 41 H 0.96699 * 113.99652 * 178.07349 * 17 16 15 42 42 H 0.96999 * 119.99842 * 179.97438 * 21 20 18 43 43 H 1.09001 * 113.77027 * 90.37320 * 26 14 12 44 44 H 1.08999 * 113.83675 * 318.91997 * 26 14 12 45 45 H 1.08000 * 121.14169 * 180.27226 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2305 6 7 2.7823 -0.2219 2.1734 7 8 3.0365 -1.0163 3.0480 8 6 2.4819 -2.2234 2.8409 9 7 2.4740 -3.3740 3.4945 10 6 1.8215 -4.4223 3.0432 11 6 1.1070 -4.3776 1.8399 12 6 0.3855 -5.5704 1.3515 13 8 0.5114 -6.6344 1.9259 14 7 -0.4125 -5.4791 0.2692 15 6 -1.1791 -6.4501 -0.5353 16 6 -2.0786 -5.2618 -0.9211 17 8 -3.1934 -5.0763 -0.0464 18 6 -2.4648 -5.2410 -2.3776 19 1 -2.1374 -6.0332 -3.0345 20 6 -3.2362 -4.2104 -2.8716 21 7 -3.6353 -3.2459 -2.0715 22 14 -3.7143 -4.1841 -4.6772 23 1 -4.5390 -2.9805 -4.9534 24 1 -2.4878 -4.1470 -5.5135 25 1 -4.4967 -5.4044 -4.9998 26 6 -0.8726 -4.3654 -0.5867 27 6 1.0821 -3.1842 1.1099 28 6 1.7790 -2.1005 1.6221 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7216 -1.2489 38 1 1.8397 -5.3402 3.6121 39 1 -1.6862 -7.2101 0.0592 40 1 -0.6203 -6.8681 -1.3727 41 1 -3.7445 -4.3133 -0.2681 42 1 -4.1776 -2.5207 -2.4192 43 1 -0.2220 -4.1683 -1.4387 44 1 -1.1353 -3.4639 -0.0332 45 1 0.5383 -3.1097 0.1798 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356560056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:57 Heat of formation + Delta-G solvation = 43.209833 kcal Electronic energy + Delta-G solvation = -31228.959290 eV Core-core repulsion = 27023.464613 eV Total energy + Delta-G solvation = -4205.494677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.85181 -40.38130 -39.07199 -37.73809 -37.34866 -34.22596 -33.35688 -32.35512 -32.04898 -31.34627 -28.76420 -27.49586 -27.42562 -26.07976 -25.79971 -25.28253 -23.68620 -22.93225 -20.85013 -20.10947 -19.16826 -17.94783 -17.89930 -17.57666 -17.28557 -16.51579 -16.01081 -15.52531 -15.15455 -15.08101 -14.93488 -14.34893 -14.31203 -14.07138 -13.76084 -13.59921 -13.37784 -13.18211 -12.65152 -12.59740 -12.47941 -12.40511 -12.15494 -11.90895 -11.86146 -11.70106 -11.60791 -11.46443 -11.26536 -11.13853 -11.04926 -10.87379 -10.65094 -10.43656 -10.09056 -9.67811 -9.42416 -9.40987 -9.25313 -8.89610 -8.58156 -8.06175 -6.51885 -4.62679 0.40497 0.46009 1.94338 2.14261 2.87298 3.07765 3.14730 3.15381 3.23075 3.58032 3.69077 3.83020 4.08315 4.19255 4.47174 4.57222 4.66245 4.70182 4.74558 4.76870 4.85446 5.04822 5.36890 5.41260 5.43378 5.48011 5.53494 5.58110 5.66928 5.70330 5.72135 5.74302 5.82610 5.92668 6.00426 6.08293 6.09739 6.13946 6.20347 6.23276 6.39993 6.47324 6.91665 7.32639 7.50478 7.67093 8.04793 8.18145 8.40885 8.44947 9.08981 9.28349 10.54757 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010232 B = 0.004331 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.859591 B = 6463.716927 C = 8659.447460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.010 3.990 3 C -0.139 4.139 4 C -0.142 4.142 5 C 0.087 3.913 6 N -0.316 5.316 7 O 0.079 5.921 8 C 0.223 3.777 9 N -0.466 5.466 10 C 0.213 3.787 11 C -0.188 4.188 12 C 0.580 3.420 13 O -0.551 6.551 14 N -0.624 5.624 15 C 0.114 3.886 16 C 0.243 3.757 17 O -0.571 6.571 18 C -0.540 4.540 19 H 0.072 0.928 20 C 0.075 3.925 21 N -0.897 5.897 22 Si 0.906 3.094 23 H -0.284 1.284 24 H -0.273 1.273 25 H -0.273 1.273 26 C 0.065 3.935 27 C 0.028 3.972 28 C -0.221 4.221 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.190 0.810 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.393 0.607 42 H 0.275 0.725 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.548 7.192 1.348 11.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.009 3.991 3 C -0.196 4.196 4 C -0.199 4.199 5 C -0.083 4.083 6 N -0.023 5.023 7 O 0.023 5.977 8 C 0.041 3.959 9 N -0.182 5.182 10 C 0.048 3.952 11 C -0.193 4.193 12 C 0.368 3.632 13 O -0.432 6.432 14 N -0.357 5.357 15 C -0.007 4.007 16 C 0.201 3.799 17 O -0.382 6.382 18 C -0.578 4.578 19 H 0.090 0.910 20 C -0.128 4.128 21 N -0.536 5.536 22 Si 0.733 3.267 23 H -0.210 1.210 24 H -0.199 1.199 25 H -0.198 1.198 26 C -0.058 4.058 27 C 0.000 4.000 28 C -0.226 4.226 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.206 0.794 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.247 0.753 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 9.948 7.469 3.188 12.842 hybrid contribution -1.183 0.165 -2.073 2.392 sum 8.765 7.635 1.115 11.677 Atomic orbital electron populations 1.21919 0.91669 1.03478 1.02920 1.19149 0.96593 0.94907 0.88481 1.21826 1.01494 0.93666 1.02616 1.21914 1.01255 1.00934 0.95847 1.24293 0.96572 0.90373 0.97099 1.73450 1.15965 1.13554 0.99332 1.84884 1.59169 1.14442 1.39175 1.21820 0.93601 0.89199 0.91261 1.66554 1.21787 0.96413 1.33491 1.23115 0.86331 0.94711 0.91055 1.21092 1.04137 0.95433 0.98641 1.17327 0.78343 0.86934 0.80568 1.90744 1.65192 1.29490 1.57773 1.50108 1.45069 1.14121 1.26378 1.23531 0.90247 0.94881 0.92055 1.19799 0.83038 0.88147 0.88898 1.86085 1.41213 1.54781 1.56151 1.21443 1.33957 1.09301 0.93080 0.90969 1.25043 0.94274 0.94461 0.98998 1.69377 1.36317 1.11854 1.36086 0.86412 0.78828 0.77890 0.83581 1.20961 1.19856 1.19799 1.24591 0.97968 0.92093 0.91102 1.21808 0.90601 0.88592 0.99014 1.20823 1.06448 0.96122 0.99218 0.92248 0.90655 0.91530 0.92129 0.91349 0.92043 0.91830 0.90680 0.92306 0.79358 0.90628 0.89127 0.75263 0.91519 0.89439 0.90839 0.81698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.41 37.16 0.31 -1.26 16 2 C 0.01 0.11 0.99 -155.65 -0.15 -0.05 16 3 C -0.14 -1.31 8.03 37.16 0.30 -1.02 16 4 C -0.14 -1.42 8.41 37.16 0.31 -1.11 16 5 C 0.09 1.15 5.79 -79.98 -0.46 0.69 16 6 N -0.32 -4.47 11.34 34.92 0.40 -4.08 16 7 O 0.08 1.18 11.11 16.11 0.18 1.36 16 8 C 0.22 3.40 8.75 -16.20 -0.14 3.26 16 9 N -0.47 -7.10 10.36 -12.61 -0.13 -7.23 16 10 C 0.21 3.13 10.73 -17.04 -0.18 2.95 16 11 C -0.19 -2.99 5.90 -104.74 -0.62 -3.60 16 12 C 0.58 10.84 7.99 -12.39 -0.10 10.74 16 13 O -0.55 -11.52 17.11 5.31 0.09 -11.43 16 14 N -0.62 -11.84 3.60 -179.29 -0.65 -12.49 16 15 C 0.11 2.24 8.23 -2.97 -0.02 2.22 16 16 C 0.24 5.24 1.40 -90.85 -0.13 5.11 16 17 O -0.57 -13.51 13.49 -35.23 -0.48 -13.98 16 18 C -0.54 -12.28 8.61 -34.44 -0.30 -12.58 16 19 H 0.07 1.60 7.81 -52.49 -0.41 1.19 16 20 C 0.08 1.71 5.40 -17.82 -0.10 1.62 16 21 N -0.90 -20.61 11.20 55.43 0.62 -19.99 16 22 Si 0.91 18.01 29.54 -169.99 -5.02 12.99 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 26 C 0.06 1.20 5.63 -2.84 -0.02 1.19 16 27 C 0.03 0.41 8.68 -38.80 -0.34 0.07 16 28 C -0.22 -3.20 6.40 -105.22 -0.67 -3.87 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.82 7.43 -51.93 -0.39 0.44 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.68 7.44 -51.93 -0.39 0.29 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.19 2.43 7.65 -52.48 -0.40 2.03 16 39 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.09 1.60 8.09 -51.93 -0.42 1.18 16 41 H 0.39 9.37 6.60 45.56 0.30 9.67 16 42 H 0.27 6.08 8.31 -40.82 -0.34 5.74 16 43 H 0.09 1.51 8.01 -51.93 -0.42 1.09 16 44 H 0.07 1.35 6.89 -51.93 -0.36 1.00 16 45 H 0.17 2.36 3.41 -52.49 -0.18 2.18 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -26.11 375.18 -6.81 -32.92 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -5.17 Total: 11.92 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -2.30 Total: 4.36 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.24 Total: -43.78 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.21 Total: -24.05 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.02 Total: 12.99 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -26.11 -6.81 -32.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356560056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.126 kcal (2) G-P(sol) polarization free energy of solvation -26.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds