Wall clock time and date at job start Wed Apr 1 2020 02:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47032 * 2 1 4 4 C 1.53005 * 109.47399 * 240.00075 * 2 1 3 5 5 C 1.50701 * 109.47325 * 119.99792 * 2 1 3 6 6 N 1.30004 * 127.40306 * 240.00761 * 5 2 1 7 7 O 1.20855 * 113.52880 * 179.97438 * 6 5 2 8 8 C 1.34445 * 113.07669 * 359.97438 * 7 6 5 9 9 N 1.32332 * 134.99291 * 180.02562 * 8 7 6 10 10 C 1.31466 * 121.78163 * 179.80304 * 9 8 7 11 11 C 1.40017 * 121.52307 * 0.43838 * 10 9 8 12 12 C 1.47711 * 120.50268 * 179.79386 * 11 10 9 13 13 O 1.21560 * 119.99993 * 353.02023 * 12 11 10 14 14 N 1.34778 * 119.99741 * 173.01842 * 12 11 10 15 15 C 1.47574 * 134.49072 * 174.47509 * 14 12 11 16 16 C 1.53944 * 86.11839 * 155.35943 * 15 14 12 17 17 O 1.42903 * 113.74349 * 269.15657 * 16 15 14 18 18 C 1.50698 * 113.74158 * 137.95374 * 16 15 14 19 19 H 1.08001 * 120.00493 * 1.92369 * 18 16 15 20 20 C 1.37877 * 119.99960 * 181.92844 * 18 16 15 21 21 N 1.31514 * 119.99943 * 359.97438 * 20 18 16 22 22 Si 1.86801 * 120.00116 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47301 * 179.97438 * 22 20 18 24 24 H 1.48498 * 109.47234 * 300.00167 * 22 20 18 25 25 H 1.48505 * 109.46762 * 59.99971 * 22 20 18 26 26 C 1.47807 * 134.45949 * 354.34623 * 14 12 11 27 27 C 1.39910 * 118.99344 * 359.52252 * 11 10 9 28 28 C 1.38659 * 117.70861 * 0.25074 * 27 11 10 29 29 H 1.08996 * 109.47283 * 300.00149 * 1 2 3 30 30 H 1.08997 * 109.47132 * 60.00201 * 1 2 3 31 31 H 1.09005 * 109.46879 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46911 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46998 * 299.99881 * 3 2 1 34 34 H 1.08998 * 109.46709 * 59.99687 * 3 2 1 35 35 H 1.09000 * 109.46505 * 299.99832 * 4 2 1 36 36 H 1.08997 * 109.47204 * 59.99768 * 4 2 1 37 37 H 1.08998 * 109.46750 * 180.02562 * 4 2 1 38 38 H 1.08003 * 119.23916 * 180.23397 * 10 9 8 39 39 H 1.09006 * 113.77239 * 41.06130 * 15 14 12 40 40 H 1.09006 * 113.87809 * 269.67622 * 15 14 12 41 41 H 0.96699 * 113.99652 * 178.07349 * 17 16 15 42 42 H 0.96999 * 119.99842 * 179.97438 * 21 20 18 43 43 H 1.09001 * 113.77027 * 90.37320 * 26 14 12 44 44 H 1.08999 * 113.83675 * 318.91997 * 26 14 12 45 45 H 1.08000 * 121.14169 * 180.27226 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2305 6 7 2.7823 -0.2219 2.1734 7 8 3.0365 -1.0163 3.0480 8 6 2.4819 -2.2234 2.8409 9 7 2.4740 -3.3740 3.4945 10 6 1.8215 -4.4223 3.0432 11 6 1.1070 -4.3776 1.8399 12 6 0.3855 -5.5704 1.3515 13 8 0.5114 -6.6344 1.9259 14 7 -0.4125 -5.4791 0.2692 15 6 -1.1791 -6.4501 -0.5353 16 6 -2.0786 -5.2618 -0.9211 17 8 -3.1934 -5.0763 -0.0464 18 6 -2.4648 -5.2410 -2.3776 19 1 -2.1374 -6.0332 -3.0345 20 6 -3.2362 -4.2104 -2.8716 21 7 -3.6353 -3.2459 -2.0715 22 14 -3.7143 -4.1841 -4.6772 23 1 -4.5390 -2.9805 -4.9534 24 1 -2.4878 -4.1470 -5.5135 25 1 -4.4967 -5.4044 -4.9998 26 6 -0.8726 -4.3654 -0.5867 27 6 1.0821 -3.1842 1.1099 28 6 1.7790 -2.1005 1.6221 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7216 -1.2489 38 1 1.8397 -5.3402 3.6121 39 1 -1.6862 -7.2101 0.0592 40 1 -0.6203 -6.8681 -1.3727 41 1 -3.7445 -4.3133 -0.2681 42 1 -4.1776 -2.5207 -2.4192 43 1 -0.2220 -4.1683 -1.4387 44 1 -1.1353 -3.4639 -0.0332 45 1 0.5383 -3.1097 0.1798 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356560056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:56 Heat of formation + Delta-G solvation = 26.138116 kcal Electronic energy + Delta-G solvation = -31229.699575 eV Core-core repulsion = 27023.464613 eV Total energy + Delta-G solvation = -4206.234962 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.97653 -41.76435 -40.45863 -38.95826 -38.58869 -35.90232 -34.53523 -34.11020 -33.24367 -32.50718 -30.32820 -28.29393 -28.25865 -27.49470 -27.32723 -26.65823 -24.94145 -23.99880 -22.28677 -21.27078 -20.65323 -19.38288 -19.03638 -18.91351 -18.62521 -17.81363 -17.43433 -16.99650 -16.66291 -16.45341 -16.01893 -15.91140 -15.21549 -15.15477 -14.96051 -14.81981 -14.71090 -14.63577 -14.18607 -13.92144 -13.74055 -13.44411 -13.37295 -13.18050 -12.97084 -12.86083 -12.73901 -12.66733 -12.47392 -12.41196 -12.23729 -12.18475 -11.93882 -11.85136 -11.54405 -11.12442 -10.89377 -10.61322 -10.60109 -10.44710 -10.21877 -9.62813 -8.22751 -6.38823 -0.80136 -0.72607 0.83989 0.97355 1.51114 1.51987 1.55728 1.60526 1.75252 2.37936 2.44521 2.52781 2.70767 2.98460 3.05626 3.24829 3.39952 3.45185 3.71933 3.79664 3.87670 3.95363 3.98814 4.10134 4.28381 4.43687 4.45070 4.53284 4.61058 4.68377 4.69584 4.71169 4.78294 4.81471 4.85546 4.92073 4.93811 5.00804 5.01964 5.22696 5.23875 5.29348 5.34246 5.76938 5.95748 6.13955 6.66488 6.68052 6.91075 6.94807 7.34277 7.47254 8.82863 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010232 B = 0.004331 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.859591 B = 6463.716927 C = 8659.447460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.009 3.991 3 C -0.135 4.135 4 C -0.142 4.142 5 C 0.097 3.903 6 N -0.323 5.323 7 O 0.071 5.929 8 C 0.217 3.783 9 N -0.473 5.473 10 C 0.222 3.778 11 C -0.199 4.199 12 C 0.580 3.420 13 O -0.577 6.577 14 N -0.626 5.626 15 C 0.114 3.886 16 C 0.222 3.778 17 O -0.586 6.586 18 C -0.556 4.556 19 H 0.073 0.927 20 C 0.042 3.958 21 N -0.911 5.911 22 Si 0.959 3.041 23 H -0.285 1.285 24 H -0.266 1.266 25 H -0.280 1.280 26 C 0.082 3.918 27 C 0.040 3.960 28 C -0.226 4.226 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.205 0.795 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.388 0.612 42 H 0.276 0.724 43 H 0.105 0.895 44 H 0.074 0.926 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.177 8.311 0.081 12.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.008 3.992 3 C -0.193 4.193 4 C -0.200 4.200 5 C -0.073 4.073 6 N -0.032 5.032 7 O 0.018 5.982 8 C 0.035 3.965 9 N -0.190 5.190 10 C 0.056 3.944 11 C -0.205 4.205 12 C 0.370 3.630 13 O -0.460 6.460 14 N -0.358 5.358 15 C -0.007 4.007 16 C 0.181 3.819 17 O -0.398 6.398 18 C -0.593 4.593 19 H 0.091 0.909 20 C -0.160 4.160 21 N -0.551 5.551 22 Si 0.785 3.215 23 H -0.210 1.210 24 H -0.191 1.191 25 H -0.205 1.205 26 C -0.040 4.040 27 C 0.012 3.988 28 C -0.232 4.232 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.221 0.779 39 H 0.082 0.918 40 H 0.129 0.871 41 H 0.242 0.758 42 H 0.086 0.914 43 H 0.122 0.878 44 H 0.092 0.908 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 10.595 8.592 1.934 13.777 hybrid contribution -1.404 -0.174 -1.665 2.185 sum 9.191 8.418 0.269 12.466 Atomic orbital electron populations 1.21922 0.91713 1.02649 1.03603 1.19321 0.96438 0.95729 0.87704 1.21819 1.01416 0.92601 1.03419 1.21943 1.01504 1.00532 0.95974 1.24741 0.95449 0.89749 0.97372 1.73457 1.16717 1.13425 0.99596 1.84891 1.59411 1.14342 1.39606 1.22032 0.93548 0.89370 0.91536 1.66614 1.22146 0.96558 1.33652 1.23329 0.85394 0.95043 0.90600 1.20881 1.05120 0.94858 0.99609 1.17623 0.78017 0.87384 0.79980 1.90724 1.66157 1.30694 1.58411 1.50095 1.45161 1.13991 1.26586 1.23564 0.90276 0.94261 0.92647 1.20080 0.83304 0.90116 0.88408 1.86074 1.42132 1.54715 1.56872 1.21652 1.34509 1.09504 0.93682 0.90891 1.25597 0.94245 0.94252 1.01860 1.69434 1.36466 1.12075 1.37091 0.85581 0.78490 0.77253 0.80142 1.21025 1.19117 1.20546 1.24420 0.96721 0.91481 0.91412 1.21783 0.89997 0.88208 0.98815 1.20916 1.06429 0.96716 0.99112 0.92539 0.89066 0.93059 0.92223 0.89241 0.92591 0.92688 0.88878 0.91981 0.77864 0.91761 0.87094 0.75775 0.91444 0.87757 0.90772 0.81240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.41 71.98 0.61 -2.26 16 2 C 0.01 0.18 0.99 -52.92 -0.05 0.13 16 3 C -0.14 -2.24 8.03 71.98 0.58 -1.66 16 4 C -0.14 -2.51 8.41 71.98 0.61 -1.90 16 5 C 0.10 2.44 5.79 45.02 0.26 2.71 16 6 N -0.32 -8.79 11.34 -43.54 -0.49 -9.28 16 7 O 0.07 2.06 11.11 67.82 0.75 2.81 16 8 C 0.22 6.44 8.75 85.35 0.75 7.19 16 9 N -0.47 -14.02 10.36 -307.30 -3.18 -17.20 16 10 C 0.22 6.33 10.73 85.18 0.91 7.24 16 11 C -0.20 -6.19 5.90 -19.94 -0.12 -6.31 16 12 C 0.58 21.38 7.99 86.75 0.69 22.08 16 13 O -0.58 -23.99 17.11 -3.91 -0.07 -24.06 16 14 N -0.63 -23.34 3.60 -843.27 -3.04 -26.37 16 15 C 0.11 4.42 8.23 86.49 0.71 5.14 16 16 C 0.22 9.48 1.40 -10.88 -0.02 9.46 16 17 O -0.59 -27.94 13.49 -148.98 -2.01 -29.95 16 18 C -0.56 -24.81 8.61 25.60 0.22 -24.59 16 19 H 0.07 3.17 7.81 -2.91 -0.02 3.15 16 20 C 0.04 1.86 5.40 84.65 0.46 2.32 16 21 N -0.91 -41.18 11.20 21.45 0.24 -40.94 16 22 Si 0.96 35.93 29.54 68.60 2.03 37.96 16 23 H -0.28 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 25 H -0.28 -10.73 7.11 99.48 0.71 -10.03 16 26 C 0.08 2.95 5.63 86.44 0.49 3.44 16 27 C 0.04 1.13 8.68 22.78 0.20 1.33 16 28 C -0.23 -6.32 6.40 -20.25 -0.13 -6.45 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.20 7.43 -2.38 -0.02 1.18 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.05 1.07 7.44 -2.39 -0.02 1.05 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.20 5.08 7.65 -2.91 -0.02 5.06 16 39 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 40 H 0.11 3.79 8.09 -2.38 -0.02 3.77 16 41 H 0.39 18.72 6.60 -74.06 -0.49 18.23 16 42 H 0.28 11.95 8.31 -92.71 -0.77 11.18 16 43 H 0.10 3.42 8.01 -2.39 -0.02 3.40 16 44 H 0.07 2.67 6.89 -2.39 -0.02 2.65 16 45 H 0.17 4.64 3.41 -2.91 -0.01 4.63 16 Total: -1.00 -54.02 375.18 0.96 -53.06 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: 0.56 Total: 36.11 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: 6.16 Total: 17.86 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -6.47 Total: -93.80 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -1.32 Total: -51.19 kcal Atomic # 14 Polarization: 35.93 SS G_CDS: 2.03 Total: 37.96 kcal Total: -54.02 0.96 -53.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356560056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.199 kcal (2) G-P(sol) polarization free energy of solvation -54.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds