Wall clock time and date at job start Wed Apr 1 2020 02:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 114.00330 * 2 1 4 4 N 1.46494 * 109.47207 * 179.97438 * 3 2 1 5 5 N 1.40081 * 126.04084 * 269.69431 * 4 3 2 6 6 C 1.30837 * 108.20828 * 180.26238 * 5 4 3 7 7 C 1.39868 * 108.20148 * 0.02562 * 6 5 4 8 8 C 1.34954 * 126.03475 * 90.00122 * 4 3 2 9 9 S 1.76200 * 126.12707 * 359.71580 * 8 4 3 10 10 O 1.42094 * 106.40302 * 203.54076 * 9 8 4 11 11 O 1.42104 * 106.40357 * 336.45933 * 9 8 4 12 12 N 1.65602 * 107.21758 * 89.99549 * 9 8 4 13 13 C 1.46497 * 120.00349 * 270.00081 * 12 9 8 14 14 C 1.50698 * 109.47191 * 94.99974 * 13 12 9 15 15 H 1.08007 * 119.99563 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00402 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00131 * 180.02562 * 16 14 13 18 18 Si 1.86806 * 119.99571 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47065 * 89.99825 * 18 16 14 20 20 H 1.48494 * 109.46728 * 209.99933 * 18 16 14 21 21 H 1.48505 * 109.47095 * 329.99669 * 18 16 14 22 22 C 1.46506 * 119.99556 * 90.00290 * 12 9 8 23 23 C 1.52993 * 109.47183 * 94.99859 * 22 12 9 24 24 C 1.53006 * 109.47110 * 179.97438 * 23 22 12 25 25 C 1.53000 * 109.47055 * 65.00203 * 24 23 22 26 26 C 1.53001 * 109.47077 * 184.99821 * 24 23 22 27 27 H 1.09008 * 109.47054 * 59.99668 * 1 2 3 28 28 H 1.08997 * 109.47385 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46888 * 300.00367 * 1 2 3 30 30 H 1.09004 * 109.46714 * 59.99715 * 3 2 1 31 31 H 1.08997 * 109.47025 * 300.00507 * 3 2 1 32 32 H 1.08001 * 125.89861 * 180.02562 * 6 5 4 33 33 H 1.07999 * 126.04291 * 180.02562 * 7 6 5 34 34 H 1.08995 * 109.47026 * 214.99960 * 13 12 9 35 35 H 1.08994 * 109.46923 * 335.00094 * 13 12 9 36 36 H 0.96996 * 119.99677 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.46884 * 214.99965 * 22 12 9 38 38 H 1.08995 * 109.46927 * 334.99580 * 22 12 9 39 39 H 1.09001 * 109.47297 * 299.99853 * 23 22 12 40 40 H 1.08995 * 109.47416 * 60.00021 * 23 22 12 41 41 H 1.08993 * 109.47123 * 305.00002 * 24 23 22 42 42 H 1.09002 * 109.47406 * 59.99747 * 25 24 23 43 43 H 1.08994 * 109.46722 * 180.02562 * 25 24 23 44 44 H 1.08999 * 109.47150 * 300.00170 * 25 24 23 45 45 H 1.09008 * 109.47111 * 60.00138 * 26 24 23 46 46 H 1.08994 * 109.46957 * 179.97438 * 26 24 23 47 47 H 1.08995 * 109.47617 * 300.00498 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 7 3.4707 1.1897 0.0006 5 7 4.2923 1.1309 1.1336 6 6 5.5343 1.0359 0.7335 7 6 5.5436 1.0319 -0.6652 8 6 4.2625 1.1268 -1.0904 9 16 3.7246 1.1622 -2.7679 10 8 4.7476 0.5369 -3.5306 11 8 2.3749 0.7177 -2.7659 12 7 3.6935 2.7494 -3.2393 13 6 2.4754 3.5432 -3.0598 14 6 2.5586 4.3043 -1.7618 15 1 3.4318 4.2068 -1.1337 16 6 1.5206 5.1260 -1.3766 17 7 1.5935 5.7906 -0.2441 18 14 0.0106 5.2950 -2.4634 19 1 -0.9908 4.2667 -2.0829 20 1 -0.5770 6.6473 -2.2872 21 1 0.3995 5.1056 -3.8840 22 6 4.8842 3.3597 -3.8361 23 6 4.7861 3.2843 -5.3610 24 6 6.0293 3.9223 -5.9842 25 6 7.2644 3.0973 -5.6169 26 6 5.8750 3.9595 -7.5060 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 6.4025 0.9718 1.3727 33 1 6.4186 0.9638 -1.2946 34 1 2.3742 4.2456 -3.8870 35 1 1.6101 2.8808 -3.0377 36 1 0.8633 6.3689 0.0267 37 1 4.9513 4.4029 -3.5274 38 1 5.7729 2.8242 -3.5023 39 1 4.7190 2.2411 -5.6697 40 1 3.8973 3.8198 -5.6948 41 1 6.1450 4.9378 -5.6058 42 1 7.1487 2.0816 -5.9954 43 1 8.1500 3.5520 -6.0605 44 1 7.3743 3.0707 -4.5328 45 1 4.9951 4.5473 -7.7677 46 1 6.7605 4.4144 -7.9499 47 1 5.7592 2.9440 -7.8845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359856512.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:54 Heat of formation + Delta-G solvation = -40.474726 kcal Electronic energy + Delta-G solvation = -30750.141747 eV Core-core repulsion = 26676.462187 eV Total energy + Delta-G solvation = -4073.679561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.87717 -37.60051 -37.42218 -36.83709 -35.52211 -35.08100 -32.63802 -32.20730 -30.16228 -29.45394 -27.15636 -27.02303 -26.93673 -24.94912 -23.26252 -22.16222 -21.53886 -21.02582 -19.83046 -18.57854 -17.69671 -17.23676 -16.96379 -16.38397 -15.81712 -15.55756 -15.28707 -14.97742 -14.51807 -14.36909 -14.21247 -14.05588 -13.69435 -13.56759 -13.47099 -12.89044 -12.76461 -12.67393 -12.39837 -12.18847 -12.13102 -11.87001 -11.73251 -11.66241 -11.50445 -11.32450 -11.27988 -11.21980 -11.09006 -10.78800 -10.54693 -10.51947 -10.46216 -10.32535 -10.16917 -9.74683 -9.54207 -9.46896 -8.81976 -8.62814 -8.29195 -6.30726 -4.34069 0.69648 1.56903 2.49869 2.88141 3.11460 3.20295 3.22883 3.38654 4.02178 4.19063 4.26208 4.62115 4.86301 4.96872 5.00756 5.03574 5.06755 5.30154 5.33602 5.49462 5.58017 5.59228 5.64818 5.66984 5.71510 5.74106 5.76434 5.84116 5.85867 5.89845 5.95220 5.99540 6.06253 6.22731 6.32160 6.35555 6.50048 6.58874 6.67494 6.77016 6.90887 6.92988 7.16539 7.32583 7.35775 7.76539 8.24291 8.73845 9.27543 10.80820 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008757 B = 0.005934 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.572496 B = 4717.338825 C = 6393.907798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.403 6.403 3 C 0.300 3.700 4 N -0.289 5.289 5 N -0.252 5.252 6 C 0.028 3.972 7 C -0.167 4.167 8 C -0.463 4.463 9 S 2.701 3.299 10 O -0.954 6.954 11 O -0.947 6.947 12 N -0.970 5.970 13 C 0.210 3.790 14 C -0.551 4.551 15 H 0.081 0.919 16 C 0.080 3.920 17 N -0.886 5.886 18 Si 0.863 3.137 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.261 1.261 22 C 0.128 3.872 23 C -0.136 4.136 24 C -0.094 4.094 25 C -0.151 4.151 26 C -0.146 4.146 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.190 0.810 33 H 0.160 0.840 34 H 0.046 0.954 35 H 0.043 0.957 36 H 0.267 0.733 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.396 -5.838 -6.173 10.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.321 6.321 3 C 0.140 3.860 4 N -0.075 5.075 5 N -0.076 5.076 6 C -0.157 4.157 7 C -0.199 4.199 8 C -0.671 4.671 9 S 2.785 3.215 10 O -0.943 6.943 11 O -0.937 6.937 12 N -0.809 5.809 13 C 0.087 3.913 14 C -0.590 4.590 15 H 0.099 0.901 16 C -0.125 4.125 17 N -0.522 5.522 18 Si 0.689 3.311 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.185 1.185 22 C 0.003 3.997 23 C -0.175 4.175 24 C -0.114 4.114 25 C -0.208 4.208 26 C -0.203 4.203 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.207 0.793 33 H 0.177 0.823 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.218 -6.517 -5.498 9.512 hybrid contribution -0.158 0.830 -0.246 0.880 sum 4.060 -5.686 -5.744 9.045 Atomic orbital electron populations 1.22673 0.78894 1.02964 1.00816 1.87732 1.20954 1.27795 1.95662 1.22726 0.72961 0.85129 1.05145 1.47990 1.05696 1.52165 1.01612 1.77220 1.02154 1.18880 1.09388 1.24013 0.95410 1.01473 0.94829 1.21487 0.95297 1.07621 0.95529 1.33881 1.00297 1.15405 1.17495 1.01977 0.73618 0.73311 0.72592 1.93565 1.59903 1.74280 1.66551 1.93573 1.34079 1.79752 1.86323 1.57224 1.20946 1.29794 1.72891 1.19712 0.81223 0.91784 0.98609 1.21459 1.05898 1.27232 1.04436 0.90082 1.24854 0.98054 0.94809 0.94764 1.69898 1.32803 1.28161 1.21382 0.87049 0.83767 0.78241 0.82078 1.19644 1.20788 1.18503 1.21284 0.85803 1.00565 0.92096 1.22118 0.98034 1.01675 0.95693 1.21055 0.95000 0.99819 0.95481 1.21917 0.96943 1.00176 1.01785 1.21830 1.01283 1.01681 0.95525 0.92800 0.89272 0.93802 0.88988 0.86813 0.79272 0.82284 0.93585 0.93956 0.92284 0.89440 0.90867 0.91443 0.91257 0.90939 0.92407 0.93145 0.92246 0.92784 0.92984 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 11.01 101.05 1.11 1.75 16 2 O -0.40 -7.75 10.86 -35.23 -0.38 -8.13 16 3 C 0.30 6.12 6.32 59.84 0.38 6.50 16 4 N -0.29 -6.04 3.88 -65.26 -0.25 -6.29 16 5 N -0.25 -5.03 12.58 30.62 0.39 -4.64 16 6 C 0.03 0.46 12.03 -17.37 -0.21 0.25 16 7 C -0.17 -2.84 10.55 -40.01 -0.42 -3.26 16 8 C -0.46 -9.10 7.00 -17.22 -0.12 -9.22 16 9 S 2.70 52.26 5.60 -107.50 -0.60 51.66 16 10 O -0.95 -18.22 16.82 -57.17 -0.96 -19.18 16 11 O -0.95 -19.99 14.29 -57.19 -0.82 -20.81 16 12 N -0.97 -18.26 2.77 -115.67 -0.32 -18.58 16 13 C 0.21 4.46 4.35 -5.20 -0.02 4.44 16 14 C -0.55 -13.60 9.28 -34.44 -0.32 -13.92 16 15 H 0.08 2.22 8.06 -52.48 -0.42 1.79 16 16 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.89 -24.55 13.96 55.43 0.77 -23.78 16 18 Si 0.86 19.16 27.47 -169.99 -4.67 14.49 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 22 C 0.13 2.04 5.10 -4.04 -0.02 2.02 16 23 C -0.14 -1.90 5.01 -26.73 -0.13 -2.04 16 24 C -0.09 -1.09 2.92 -90.62 -0.26 -1.36 16 25 C -0.15 -1.66 8.95 37.16 0.33 -1.33 16 26 C -0.15 -1.50 9.19 37.16 0.34 -1.15 16 27 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 31 H 0.11 2.44 5.82 -51.93 -0.30 2.13 16 32 H 0.19 2.20 8.06 -52.49 -0.42 1.78 16 33 H 0.16 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.05 0.95 7.17 -51.93 -0.37 0.58 16 35 H 0.04 0.91 6.29 -51.93 -0.33 0.59 16 36 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.09 1.41 8.11 -51.93 -0.42 0.99 16 38 H 0.07 1.06 6.03 -51.93 -0.31 0.75 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.66 6.57 -51.93 -0.34 0.32 16 45 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -31.32 396.31 -7.90 -39.22 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -7.59 Total: 5.43 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 0.55 Total: -15.37 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.59 Total: -53.29 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -2.16 Total: -48.12 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.67 Total: 14.49 kcal Atomic # 16 Polarization: 52.26 SS G_CDS: -0.60 Total: 51.66 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.32 -7.90 -39.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359856512.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.250 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds