Wall clock time and date at job start Wed Apr 1 2020 02:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 114.00330 * 2 1 4 4 N 1.46494 * 109.47207 * 179.97438 * 3 2 1 5 5 N 1.40081 * 126.04084 * 269.69431 * 4 3 2 6 6 C 1.30837 * 108.20828 * 180.26238 * 5 4 3 7 7 C 1.39868 * 108.20148 * 0.02562 * 6 5 4 8 8 C 1.34954 * 126.03475 * 90.00122 * 4 3 2 9 9 S 1.76200 * 126.12707 * 359.71580 * 8 4 3 10 10 O 1.42094 * 106.40302 * 203.54076 * 9 8 4 11 11 O 1.42104 * 106.40357 * 336.45933 * 9 8 4 12 12 N 1.65602 * 107.21758 * 89.99549 * 9 8 4 13 13 C 1.46497 * 120.00349 * 270.00081 * 12 9 8 14 14 C 1.50698 * 109.47191 * 94.99974 * 13 12 9 15 15 H 1.08007 * 119.99563 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00402 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00131 * 180.02562 * 16 14 13 18 18 Si 1.86806 * 119.99571 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47065 * 89.99825 * 18 16 14 20 20 H 1.48494 * 109.46728 * 209.99933 * 18 16 14 21 21 H 1.48505 * 109.47095 * 329.99669 * 18 16 14 22 22 C 1.46506 * 119.99556 * 90.00290 * 12 9 8 23 23 C 1.52993 * 109.47183 * 94.99859 * 22 12 9 24 24 C 1.53006 * 109.47110 * 179.97438 * 23 22 12 25 25 C 1.53000 * 109.47055 * 65.00203 * 24 23 22 26 26 C 1.53001 * 109.47077 * 184.99821 * 24 23 22 27 27 H 1.09008 * 109.47054 * 59.99668 * 1 2 3 28 28 H 1.08997 * 109.47385 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46888 * 300.00367 * 1 2 3 30 30 H 1.09004 * 109.46714 * 59.99715 * 3 2 1 31 31 H 1.08997 * 109.47025 * 300.00507 * 3 2 1 32 32 H 1.08001 * 125.89861 * 180.02562 * 6 5 4 33 33 H 1.07999 * 126.04291 * 180.02562 * 7 6 5 34 34 H 1.08995 * 109.47026 * 214.99960 * 13 12 9 35 35 H 1.08994 * 109.46923 * 335.00094 * 13 12 9 36 36 H 0.96996 * 119.99677 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.46884 * 214.99965 * 22 12 9 38 38 H 1.08995 * 109.46927 * 334.99580 * 22 12 9 39 39 H 1.09001 * 109.47297 * 299.99853 * 23 22 12 40 40 H 1.08995 * 109.47416 * 60.00021 * 23 22 12 41 41 H 1.08993 * 109.47123 * 305.00002 * 24 23 22 42 42 H 1.09002 * 109.47406 * 59.99747 * 25 24 23 43 43 H 1.08994 * 109.46722 * 180.02562 * 25 24 23 44 44 H 1.08999 * 109.47150 * 300.00170 * 25 24 23 45 45 H 1.09008 * 109.47111 * 60.00138 * 26 24 23 46 46 H 1.08994 * 109.46957 * 179.97438 * 26 24 23 47 47 H 1.08995 * 109.47617 * 300.00498 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 7 3.4707 1.1897 0.0006 5 7 4.2923 1.1309 1.1336 6 6 5.5343 1.0359 0.7335 7 6 5.5436 1.0319 -0.6652 8 6 4.2625 1.1268 -1.0904 9 16 3.7246 1.1622 -2.7679 10 8 4.7476 0.5369 -3.5306 11 8 2.3749 0.7177 -2.7659 12 7 3.6935 2.7494 -3.2393 13 6 2.4754 3.5432 -3.0598 14 6 2.5586 4.3043 -1.7618 15 1 3.4318 4.2068 -1.1337 16 6 1.5206 5.1260 -1.3766 17 7 1.5935 5.7906 -0.2441 18 14 0.0106 5.2950 -2.4634 19 1 -0.9908 4.2667 -2.0829 20 1 -0.5770 6.6473 -2.2872 21 1 0.3995 5.1056 -3.8840 22 6 4.8842 3.3597 -3.8361 23 6 4.7861 3.2843 -5.3610 24 6 6.0293 3.9223 -5.9842 25 6 7.2644 3.0973 -5.6169 26 6 5.8750 3.9595 -7.5060 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 6.4025 0.9718 1.3727 33 1 6.4186 0.9638 -1.2946 34 1 2.3742 4.2456 -3.8870 35 1 1.6101 2.8808 -3.0377 36 1 0.8633 6.3689 0.0267 37 1 4.9513 4.4029 -3.5274 38 1 5.7729 2.8242 -3.5023 39 1 4.7190 2.2411 -5.6697 40 1 3.8973 3.8198 -5.6948 41 1 6.1450 4.9378 -5.6058 42 1 7.1487 2.0816 -5.9954 43 1 8.1500 3.5520 -6.0605 44 1 7.3743 3.0707 -4.5328 45 1 4.9951 4.5473 -7.7677 46 1 6.7605 4.4144 -7.9499 47 1 5.7592 2.9440 -7.8845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359856512.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:53 Heat of formation + Delta-G solvation = -63.122992 kcal Electronic energy + Delta-G solvation = -30751.123850 eV Core-core repulsion = 26676.462187 eV Total energy + Delta-G solvation = -4074.661663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.29246 -39.03705 -38.67863 -38.35398 -37.08132 -36.38956 -34.50202 -33.63959 -31.59342 -30.91172 -28.65380 -28.23570 -27.89511 -26.34977 -24.73900 -23.65247 -23.07638 -22.41443 -20.80223 -20.07201 -19.21107 -18.97890 -18.62013 -17.82912 -17.35118 -16.97931 -16.73177 -16.24911 -16.00697 -15.75951 -15.64097 -15.40751 -14.90719 -14.79701 -14.69441 -14.44966 -14.23562 -14.02873 -13.91233 -13.57699 -13.32039 -13.21527 -13.10870 -13.09258 -12.86150 -12.75949 -12.71044 -12.58396 -12.34653 -12.23717 -11.94696 -11.89452 -11.75347 -11.54954 -11.42915 -11.30252 -11.00852 -10.90790 -10.78860 -10.05330 -9.83650 -8.29568 -6.35952 -0.80869 0.12265 1.06968 1.36088 1.40016 1.47201 1.55683 1.89451 2.32587 2.51245 2.87176 3.03611 3.14626 3.45964 3.80368 3.92085 4.00528 4.06779 4.13782 4.20011 4.24592 4.32835 4.40923 4.48082 4.50449 4.66897 4.69480 4.72623 4.74636 4.86428 4.90793 4.96476 5.01040 5.13219 5.18726 5.21862 5.36543 5.41624 5.43012 5.44170 5.52873 5.56585 5.63096 5.70465 5.93208 6.27070 6.37229 6.70616 7.28581 8.85142 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008757 B = 0.005934 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.572496 B = 4717.338825 C = 6393.907798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.419 6.419 3 C 0.303 3.697 4 N -0.312 5.312 5 N -0.287 5.287 6 C 0.039 3.961 7 C -0.160 4.160 8 C -0.491 4.491 9 S 2.711 3.289 10 O -0.952 6.952 11 O -0.969 6.969 12 N -0.970 5.970 13 C 0.216 3.784 14 C -0.537 4.537 15 H 0.045 0.955 16 C 0.030 3.970 17 N -0.933 5.933 18 Si 0.914 3.086 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.238 1.238 22 C 0.120 3.880 23 C -0.133 4.133 24 C -0.093 4.093 25 C -0.152 4.152 26 C -0.144 4.144 27 H 0.050 0.950 28 H 0.118 0.882 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.239 0.761 33 H 0.194 0.806 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.267 0.733 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.461 -6.323 -7.680 11.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.338 6.338 3 C 0.143 3.857 4 N -0.099 5.099 5 N -0.111 5.111 6 C -0.146 4.146 7 C -0.192 4.192 8 C -0.698 4.698 9 S 2.795 3.205 10 O -0.941 6.941 11 O -0.959 6.959 12 N -0.809 5.809 13 C 0.092 3.908 14 C -0.576 4.576 15 H 0.063 0.937 16 C -0.170 4.170 17 N -0.573 5.573 18 Si 0.737 3.263 19 H -0.189 1.189 20 H -0.210 1.210 21 H -0.161 1.161 22 C -0.005 4.005 23 C -0.173 4.173 24 C -0.112 4.112 25 C -0.209 4.209 26 C -0.202 4.202 27 H 0.068 0.932 28 H 0.136 0.864 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.255 0.745 33 H 0.211 0.789 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.289 -7.020 -7.043 11.263 hybrid contribution -0.355 0.932 0.283 1.037 sum 4.934 -6.088 -6.761 10.349 Atomic orbital electron populations 1.23007 0.76927 1.05068 1.01403 1.87719 1.23186 1.27156 1.95690 1.22492 0.73654 0.85630 1.03906 1.48073 1.05804 1.53837 1.02139 1.77179 1.03603 1.20382 1.09936 1.24871 0.95601 0.98818 0.95349 1.22049 0.95337 1.05489 0.96310 1.34021 1.01506 1.16932 1.17382 1.01595 0.73146 0.73247 0.72462 1.93557 1.59609 1.74295 1.66641 1.93537 1.35384 1.80277 1.86691 1.57185 1.21155 1.29484 1.73088 1.19524 0.82375 0.91831 0.97108 1.21524 1.04282 1.26757 1.05080 0.93699 1.25575 1.00980 0.94628 0.95848 1.70034 1.33988 1.29714 1.23524 0.86206 0.80383 0.78101 0.81585 1.18925 1.20995 1.16091 1.21548 0.85207 1.00298 0.93399 1.22106 0.99351 1.01601 0.94196 1.21064 0.94018 0.99817 0.96325 1.21933 0.97316 0.99980 1.01708 1.21816 1.02049 1.01891 0.94398 0.93169 0.86428 0.92269 0.89659 0.88502 0.74525 0.78917 0.92244 0.93994 0.92393 0.89931 0.89409 0.91989 0.91506 0.90582 0.92831 0.91445 0.92565 0.92766 0.91508 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 11.01 113.37 1.25 2.18 16 2 O -0.42 -16.37 10.86 -148.98 -1.62 -17.99 16 3 C 0.30 12.80 6.32 127.77 0.81 13.61 16 4 N -0.31 -13.23 3.88 -460.85 -1.79 -15.02 16 5 N -0.29 -11.40 12.58 -57.02 -0.72 -12.12 16 6 C 0.04 1.21 12.03 85.24 1.02 2.23 16 7 C -0.16 -5.14 10.55 21.99 0.23 -4.91 16 8 C -0.49 -19.15 7.00 83.54 0.58 -18.56 16 9 S 2.71 103.82 5.60 -56.49 -0.32 103.50 16 10 O -0.95 -35.13 16.82 -128.00 -2.15 -37.28 16 11 O -0.97 -41.14 14.29 -127.99 -1.83 -42.97 16 12 N -0.97 -36.10 2.77 -519.87 -1.44 -37.54 16 13 C 0.22 9.10 4.35 85.63 0.37 9.48 16 14 C -0.54 -26.97 9.28 25.60 0.24 -26.74 16 15 H 0.04 2.55 8.06 -2.91 -0.02 2.52 16 16 C 0.03 1.55 5.47 84.66 0.46 2.01 16 17 N -0.93 -53.24 13.96 21.45 0.30 -52.94 16 18 Si 0.91 39.09 27.47 68.60 1.88 40.97 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.24 -9.22 6.54 99.48 0.65 -8.57 16 22 C 0.12 3.70 5.10 86.38 0.44 4.14 16 23 C -0.13 -3.54 5.01 30.59 0.15 -3.38 16 24 C -0.09 -1.97 2.92 -10.79 -0.03 -2.00 16 25 C -0.15 -2.99 8.95 71.98 0.64 -2.35 16 26 C -0.14 -2.62 9.19 71.98 0.66 -1.96 16 27 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 3.56 8.14 -2.38 -0.02 3.54 16 31 H 0.10 4.33 5.82 -2.39 -0.01 4.32 16 32 H 0.24 4.64 8.06 -2.91 -0.02 4.61 16 33 H 0.19 4.66 8.06 -2.91 -0.02 4.64 16 34 H 0.06 2.36 7.17 -2.39 -0.02 2.34 16 35 H 0.04 1.80 6.29 -2.39 -0.02 1.78 16 36 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 37 H 0.08 2.61 8.11 -2.39 -0.02 2.59 16 38 H 0.09 2.41 6.03 -2.39 -0.01 2.40 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 1.12 6.57 -2.39 -0.02 1.11 16 45 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -68.82 396.31 0.06 -68.76 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.89 Total: 28.86 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 6.84 Total: -26.25 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -3.65 Total: -117.62 kcal Atomic # 8 Polarization: -92.63 SS G_CDS: -5.60 Total: -98.23 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 1.88 Total: 40.97 kcal Atomic # 16 Polarization: 103.82 SS G_CDS: -0.32 Total: 103.50 kcal Total: -68.82 0.06 -68.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359856512.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.637 kcal (2) G-P(sol) polarization free energy of solvation -68.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds