Wall clock time and date at job start Wed Apr 1 2020 02:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47414 * 2 1 4 4 C 1.53000 * 109.46708 * 239.99916 * 2 1 3 5 5 C 1.50698 * 109.47356 * 60.00582 * 4 2 1 6 6 H 1.07998 * 119.99756 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00089 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99687 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00010 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46755 * 90.00339 * 9 7 5 11 11 H 1.48502 * 109.46948 * 210.00095 * 9 7 5 12 12 H 1.48498 * 109.46866 * 330.00353 * 9 7 5 13 13 C 1.53003 * 109.46870 * 120.00486 * 2 1 3 14 14 N 1.46499 * 109.46708 * 299.99298 * 13 2 1 15 15 C 1.34784 * 119.99893 * 180.02562 * 14 13 2 16 16 O 1.21538 * 119.99608 * 359.97438 * 15 14 13 17 17 C 1.47962 * 120.00001 * 179.72903 * 15 14 13 18 18 C 1.39600 * 120.00113 * 359.72203 * 17 15 14 19 19 C 1.37772 * 119.99666 * 179.79375 * 18 17 15 20 20 C 1.39585 * 120.00118 * 0.48249 * 19 18 17 21 21 C 1.47997 * 119.99881 * 179.72208 * 20 19 18 22 22 N 1.32614 * 126.33978 * 180.02562 * 21 20 19 23 23 C 1.34082 * 105.78298 * 180.02562 * 22 21 20 24 24 O 1.21926 * 126.42665 * 180.02562 * 23 22 21 25 25 O 1.34158 * 107.14851 * 359.97438 * 23 22 21 26 26 N 1.21326 * 109.80712 * 359.70622 * 25 23 22 27 27 H 0.96997 * 125.03126 * 180.26480 * 26 25 23 28 28 C 1.39582 * 120.00345 * 359.74975 * 20 19 18 29 29 C 1.37772 * 120.00137 * 0.02562 * 28 20 19 30 30 H 1.09007 * 109.46830 * 300.00287 * 1 2 3 31 31 H 1.09005 * 109.46980 * 59.99998 * 1 2 3 32 32 H 1.08994 * 109.47292 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.46855 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47095 * 300.00040 * 3 2 1 35 35 H 1.08998 * 109.46768 * 59.99989 * 3 2 1 36 36 H 1.09005 * 109.47033 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.47677 * 299.99823 * 4 2 1 38 38 H 0.97003 * 120.00152 * 179.97438 * 8 7 5 39 39 H 1.08998 * 109.46692 * 179.97438 * 13 2 1 40 40 H 1.08994 * 109.47584 * 59.99664 * 13 2 1 41 41 H 0.97005 * 120.00261 * 0.02562 * 14 13 2 42 42 H 1.07995 * 120.00136 * 0.02562 * 18 17 15 43 43 H 1.07998 * 119.99968 * 180.25080 * 19 18 17 44 44 H 1.07992 * 119.99931 * 180.02562 * 28 20 19 45 45 H 1.08004 * 120.00167 * 179.97438 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9166 0.8671 -2.3806 7 6 1.8703 -0.4823 -3.7320 8 7 1.4315 0.1375 -4.8057 9 14 2.9441 -2.0012 -3.9034 10 1 2.0853 -3.2119 -3.9483 11 1 3.7356 -1.9090 -5.1565 12 1 3.8648 -2.0901 -2.7417 13 6 2.0400 -0.7214 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5763 -1.4792 3.7810 17 6 1.3895 0.2101 4.8776 18 6 0.5961 1.3516 4.7496 19 6 0.1381 2.0018 5.8745 20 6 0.4756 1.5251 7.1423 21 6 -0.0113 2.2273 8.3506 22 7 0.2317 1.8865 9.6090 23 6 -0.4029 2.7963 10.3622 24 8 -0.4272 2.8377 11.5806 25 8 -1.0054 3.6531 9.5239 26 7 -0.7779 3.3335 8.3759 27 1 -1.1032 3.8034 7.5922 28 6 1.2729 0.3866 7.2704 29 6 1.7272 -0.2664 6.1455 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.1300 -0.7217 -1.2491 37 1 1.6766 -1.7490 -1.2493 38 1 1.6658 -0.1939 -5.6868 39 1 3.1300 -0.7218 1.2490 40 1 1.6766 -1.7490 1.2492 41 1 0.9938 0.7579 2.3564 42 1 0.3383 1.7227 3.7687 43 1 -0.4791 2.8825 5.7755 44 1 1.5337 0.0177 8.2512 45 1 2.3445 -1.1471 6.2446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360410139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:49 Heat of formation + Delta-G solvation = 23.549769 kcal Electronic energy + Delta-G solvation = -28682.989643 eV Core-core repulsion = 24476.642442 eV Total energy + Delta-G solvation = -4206.347201 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.08155 -40.69705 -39.14408 -38.49795 -37.37812 -36.32221 -34.02048 -33.29411 -32.36801 -31.62661 -31.49542 -27.99558 -26.96599 -26.70378 -25.59667 -24.52527 -23.29909 -22.80916 -22.07772 -20.84746 -20.54852 -19.03413 -19.01556 -17.95150 -17.49634 -16.93530 -16.67336 -16.10078 -15.91705 -15.44459 -15.31038 -15.02733 -14.37255 -14.24217 -14.22185 -14.12017 -13.85680 -13.70050 -13.57337 -12.90052 -12.85889 -12.59378 -12.36954 -12.29667 -12.26549 -11.78172 -11.37028 -11.26435 -11.10596 -11.10194 -10.72454 -10.62282 -10.28093 -10.09571 -9.83256 -9.76185 -9.70066 -9.65135 -9.61560 -9.09817 -9.03720 -8.61197 -6.11948 -4.09883 -0.56344 0.62925 0.84588 1.13404 2.25084 2.49609 2.58764 2.98907 3.23099 3.25613 3.30947 3.34311 3.37210 3.91326 4.04140 4.18344 4.36043 4.38541 4.56779 4.74824 4.92815 5.07977 5.19007 5.19879 5.25763 5.38286 5.41700 5.48076 5.50846 5.70248 5.80790 5.94082 5.95328 6.01670 6.04517 6.15480 6.26484 6.45987 6.50533 6.75379 6.89313 6.92665 7.04258 7.09036 7.25605 7.35480 7.37212 7.69925 8.02592 8.43862 8.91272 9.50527 11.00583 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.030089 B = 0.001761 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.341201 B =15894.987084 C =16628.933765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.064 4.064 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.513 4.513 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.124 3.876 14 N -0.711 5.711 15 C 0.545 3.455 16 O -0.532 6.532 17 C -0.087 4.087 18 C -0.090 4.090 19 C -0.088 4.088 20 C -0.049 4.049 21 C 0.402 3.598 22 N -0.543 5.543 23 C 0.560 3.440 24 O -0.468 6.468 25 O -0.081 6.081 26 N -0.499 5.499 27 H 0.471 0.529 28 C -0.052 4.052 29 C -0.065 4.065 30 H 0.029 0.971 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.029 0.971 36 H 0.019 0.981 37 H 0.014 0.986 38 H 0.263 0.737 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.399 0.601 42 H 0.141 0.859 43 H 0.134 0.866 44 H 0.153 0.847 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 6.572 21.464 22.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.064 4.064 3 C -0.187 4.187 4 C -0.040 4.040 5 C -0.551 4.551 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.001 3.999 14 N -0.363 5.363 15 C 0.331 3.669 16 O -0.409 6.409 17 C -0.091 4.091 18 C -0.108 4.108 19 C -0.108 4.108 20 C -0.051 4.051 21 C 0.137 3.863 22 N -0.304 5.304 23 C 0.309 3.691 24 O -0.348 6.348 25 O -0.103 6.103 26 N -0.166 5.166 27 H 0.325 0.675 28 C -0.072 4.072 29 C -0.084 4.084 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.236 0.764 42 H 0.159 0.841 43 H 0.151 0.849 44 H 0.170 0.830 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.878 5.631 22.604 23.616 hybrid contribution -0.349 0.451 -0.820 0.999 sum -4.227 6.081 21.785 23.009 Atomic orbital electron populations 1.21793 0.94730 1.01408 1.00752 1.20715 0.95864 0.95958 0.93896 1.21784 1.00613 0.95509 1.00748 1.19590 0.96353 0.95519 0.92501 1.21052 1.32037 1.13426 0.88599 0.90404 1.25001 0.95662 0.96754 0.95992 1.69894 1.45768 1.40533 0.97924 0.86859 0.81314 0.83872 0.77721 1.20359 1.21470 1.18981 1.21744 0.99209 0.96190 0.82744 1.46127 1.52638 1.31813 1.05690 1.18224 0.80992 0.84405 0.83298 1.90805 1.37616 1.25841 1.86677 1.20445 0.98159 0.95844 0.94642 1.21265 0.96164 0.94246 0.99169 1.21013 0.99310 0.99779 0.90702 1.17655 1.02626 0.97428 0.87401 1.23268 0.84875 0.83368 0.94822 1.73572 1.30592 1.27388 0.98890 1.21771 0.79457 0.79069 0.88803 1.91206 1.63612 1.73415 1.06555 1.85249 1.66910 1.51988 1.06134 1.42492 1.48042 1.26787 0.99322 0.67475 1.21346 0.93345 0.92122 1.00405 1.21381 0.97351 0.99646 0.89998 0.95171 0.90719 0.93254 0.93249 0.90717 0.95170 0.96294 0.96743 0.92731 0.91358 0.91369 0.76388 0.84106 0.84852 0.82968 0.83037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.05 37.16 0.30 -1.64 16 2 C -0.06 -1.03 0.54 -154.51 -0.08 -1.11 16 3 C -0.13 -1.94 8.05 37.16 0.30 -1.64 16 4 C 0.00 -0.04 3.11 -27.88 -0.09 -0.12 16 5 C -0.51 -12.96 8.20 -34.44 -0.28 -13.24 16 6 H 0.08 2.07 5.92 -52.49 -0.31 1.76 16 7 C 0.07 1.82 5.47 -17.82 -0.10 1.72 16 8 N -0.90 -26.18 13.96 55.43 0.77 -25.41 16 9 Si 0.87 20.63 27.47 -169.99 -4.67 15.96 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 13 C 0.12 1.78 4.56 -4.04 -0.02 1.76 16 14 N -0.71 -7.88 4.91 -61.21 -0.30 -8.18 16 15 C 0.55 6.33 7.78 -12.27 -0.10 6.23 16 16 O -0.53 -8.23 16.33 5.33 0.09 -8.14 16 17 C -0.09 -0.69 5.88 -104.90 -0.62 -1.31 16 18 C -0.09 -0.44 9.53 -39.24 -0.37 -0.81 16 19 C -0.09 -0.27 9.68 -39.25 -0.38 -0.65 16 20 C -0.05 -0.24 5.88 -104.89 -0.62 -0.86 16 21 C 0.40 2.42 7.80 -155.29 -1.21 1.21 16 22 N -0.54 -5.43 11.22 -14.88 -0.17 -5.60 16 23 C 0.56 6.42 9.60 53.47 0.51 6.93 16 24 O -0.47 -7.16 18.07 -19.20 -0.35 -7.50 16 25 O -0.08 -0.61 11.33 -7.43 -0.08 -0.69 16 26 N -0.50 -1.92 6.74 31.96 0.22 -1.70 16 27 H 0.47 -0.41 8.00 -40.82 -0.33 -0.73 16 28 C -0.05 -0.31 9.68 -39.25 -0.38 -0.69 16 29 C -0.06 -0.47 9.58 -39.25 -0.38 -0.85 16 30 H 0.03 0.34 6.86 -51.93 -0.36 -0.02 16 31 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 35 H 0.03 0.34 6.86 -51.93 -0.36 -0.02 16 36 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 37 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.40 3.41 4.18 -40.82 -0.17 3.24 16 42 H 0.14 0.45 6.39 -52.49 -0.34 0.11 16 43 H 0.13 -0.10 7.13 -52.49 -0.37 -0.48 16 44 H 0.15 0.86 7.85 -52.49 -0.41 0.45 16 45 H 0.15 1.14 7.64 -52.48 -0.40 0.74 16 LS Contribution 373.88 15.07 5.63 5.63 Total: -1.00 -35.49 373.88 -7.72 -43.21 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -5.35 Total: -2.50 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -3.51 Total: -5.07 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.52 Total: -40.89 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.34 Total: -16.34 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.49 -7.72 -43.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360410139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.760 kcal (2) G-P(sol) polarization free energy of solvation -35.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds