Wall clock time and date at job start Wed Apr 1 2020 02:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47414 * 2 1 4 4 C 1.53000 * 109.46708 * 239.99916 * 2 1 3 5 5 C 1.50698 * 109.47356 * 60.00582 * 4 2 1 6 6 H 1.07998 * 119.99756 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00089 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99687 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00010 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46755 * 90.00339 * 9 7 5 11 11 H 1.48502 * 109.46948 * 210.00095 * 9 7 5 12 12 H 1.48498 * 109.46866 * 330.00353 * 9 7 5 13 13 C 1.53003 * 109.46870 * 120.00486 * 2 1 3 14 14 N 1.46499 * 109.46708 * 299.99298 * 13 2 1 15 15 C 1.34784 * 119.99893 * 180.02562 * 14 13 2 16 16 O 1.21538 * 119.99608 * 359.97438 * 15 14 13 17 17 C 1.47962 * 120.00001 * 179.72903 * 15 14 13 18 18 C 1.39600 * 120.00113 * 359.72203 * 17 15 14 19 19 C 1.37772 * 119.99666 * 179.79375 * 18 17 15 20 20 C 1.39585 * 120.00118 * 0.48249 * 19 18 17 21 21 C 1.47997 * 119.99881 * 179.72208 * 20 19 18 22 22 N 1.32614 * 126.33978 * 180.02562 * 21 20 19 23 23 C 1.34082 * 105.78298 * 180.02562 * 22 21 20 24 24 O 1.21926 * 126.42665 * 180.02562 * 23 22 21 25 25 O 1.34158 * 107.14851 * 359.97438 * 23 22 21 26 26 N 1.21326 * 109.80712 * 359.70622 * 25 23 22 27 27 H 0.96997 * 125.03126 * 180.26480 * 26 25 23 28 28 C 1.39582 * 120.00345 * 359.74975 * 20 19 18 29 29 C 1.37772 * 120.00137 * 0.02562 * 28 20 19 30 30 H 1.09007 * 109.46830 * 300.00287 * 1 2 3 31 31 H 1.09005 * 109.46980 * 59.99998 * 1 2 3 32 32 H 1.08994 * 109.47292 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.46855 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47095 * 300.00040 * 3 2 1 35 35 H 1.08998 * 109.46768 * 59.99989 * 3 2 1 36 36 H 1.09005 * 109.47033 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.47677 * 299.99823 * 4 2 1 38 38 H 0.97003 * 120.00152 * 179.97438 * 8 7 5 39 39 H 1.08998 * 109.46692 * 179.97438 * 13 2 1 40 40 H 1.08994 * 109.47584 * 59.99664 * 13 2 1 41 41 H 0.97005 * 120.00261 * 0.02562 * 14 13 2 42 42 H 1.07995 * 120.00136 * 0.02562 * 18 17 15 43 43 H 1.07998 * 119.99968 * 180.25080 * 19 18 17 44 44 H 1.07992 * 119.99931 * 180.02562 * 28 20 19 45 45 H 1.08004 * 120.00167 * 179.97438 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9166 0.8671 -2.3806 7 6 1.8703 -0.4823 -3.7320 8 7 1.4315 0.1375 -4.8057 9 14 2.9441 -2.0012 -3.9034 10 1 2.0853 -3.2119 -3.9483 11 1 3.7356 -1.9090 -5.1565 12 1 3.8648 -2.0901 -2.7417 13 6 2.0400 -0.7214 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5763 -1.4792 3.7810 17 6 1.3895 0.2101 4.8776 18 6 0.5961 1.3516 4.7496 19 6 0.1381 2.0018 5.8745 20 6 0.4756 1.5251 7.1423 21 6 -0.0113 2.2273 8.3506 22 7 0.2317 1.8865 9.6090 23 6 -0.4029 2.7963 10.3622 24 8 -0.4272 2.8377 11.5806 25 8 -1.0054 3.6531 9.5239 26 7 -0.7779 3.3335 8.3759 27 1 -1.1032 3.8034 7.5922 28 6 1.2729 0.3866 7.2704 29 6 1.7272 -0.2664 6.1455 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.1300 -0.7217 -1.2491 37 1 1.6766 -1.7490 -1.2493 38 1 1.6658 -0.1939 -5.6868 39 1 3.1300 -0.7218 1.2490 40 1 1.6766 -1.7490 1.2492 41 1 0.9938 0.7579 2.3564 42 1 0.3383 1.7227 3.7687 43 1 -0.4791 2.8825 5.7755 44 1 1.5337 0.0177 8.2512 45 1 2.3445 -1.1471 6.2446 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360410139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:48 Heat of formation + Delta-G solvation = -2.832712 kcal Electronic energy + Delta-G solvation = -28684.133673 eV Core-core repulsion = 24476.642442 eV Total energy + Delta-G solvation = -4207.491232 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.68030 -41.42670 -39.89653 -39.35110 -38.60630 -36.97337 -35.30128 -34.12354 -33.88100 -32.27088 -31.98132 -29.71497 -27.95276 -27.93311 -26.37422 -25.23685 -24.33920 -23.72054 -22.88996 -21.59427 -21.14555 -20.05951 -19.66203 -18.91972 -18.76784 -18.31046 -17.45711 -16.97078 -16.55912 -16.44059 -16.26599 -15.85624 -15.61200 -15.24129 -15.20742 -14.99603 -14.86692 -14.52750 -14.41126 -14.18319 -14.07091 -13.85694 -13.47971 -12.99314 -12.99106 -12.87623 -12.81424 -12.56012 -12.26945 -12.21782 -12.11401 -11.91265 -11.76525 -11.48060 -11.33087 -10.99713 -10.86598 -10.68561 -10.41592 -10.25953 -10.14505 -9.95975 -8.20662 -6.20211 -1.08646 0.25047 0.25384 0.65228 1.36912 1.40669 1.49388 1.50485 1.83432 1.88579 2.10895 2.40387 2.67751 2.73110 3.15312 3.42683 3.68583 3.74831 3.78405 3.96445 4.09850 4.12072 4.19339 4.26444 4.46906 4.55105 4.67203 4.74562 4.81583 4.89637 4.99618 5.00819 5.05739 5.10120 5.14773 5.24451 5.32944 5.37273 5.45612 5.46969 5.47857 5.59597 5.61161 5.75091 5.80240 6.25942 6.39834 6.53017 6.71510 6.87233 7.17306 7.42731 8.94588 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.030089 B = 0.001761 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.341201 B =15894.987084 C =16628.933765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.059 4.059 3 C -0.126 4.126 4 C -0.006 4.006 5 C -0.499 4.499 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.950 5.950 9 Si 0.931 3.069 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.251 1.251 13 C 0.136 3.864 14 N -0.700 5.700 15 C 0.546 3.454 16 O -0.579 6.579 17 C -0.101 4.101 18 C -0.082 4.082 19 C -0.064 4.064 20 C -0.044 4.044 21 C 0.415 3.585 22 N -0.574 5.574 23 C 0.554 3.446 24 O -0.523 6.523 25 O -0.072 6.072 26 N -0.470 5.470 27 H 0.495 0.505 28 C -0.056 4.056 29 C -0.075 4.075 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.014 0.986 37 H 0.012 0.988 38 H 0.261 0.739 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.414 0.586 42 H 0.168 0.832 43 H 0.185 0.815 44 H 0.149 0.851 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.562 7.997 22.456 24.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.059 4.059 3 C -0.183 4.183 4 C -0.043 4.043 5 C -0.538 4.538 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.592 5.592 9 Si 0.757 3.243 10 H -0.199 1.199 11 H -0.218 1.218 12 H -0.175 1.175 13 C 0.012 3.988 14 N -0.352 5.352 15 C 0.334 3.666 16 O -0.459 6.459 17 C -0.105 4.105 18 C -0.100 4.100 19 C -0.083 4.083 20 C -0.046 4.046 21 C 0.150 3.850 22 N -0.338 5.338 23 C 0.304 3.696 24 O -0.407 6.407 25 O -0.094 6.094 26 N -0.138 5.138 27 H 0.355 0.645 28 C -0.076 4.076 29 C -0.094 4.094 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.032 0.968 37 H 0.030 0.970 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.254 0.746 42 H 0.185 0.815 43 H 0.202 0.798 44 H 0.167 0.833 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.926 7.113 23.535 25.075 hybrid contribution -0.094 0.088 -1.172 1.179 sum -5.020 7.201 22.363 24.024 Atomic orbital electron populations 1.21733 0.93645 1.01352 1.01570 1.20568 0.96681 0.96236 0.92438 1.21726 1.00274 0.94703 1.01576 1.19584 0.95947 0.95511 0.93302 1.21384 1.30103 1.12283 0.89984 0.92651 1.25812 0.97464 0.99762 0.96046 1.70032 1.48144 1.42629 0.98402 0.85946 0.79948 0.80592 0.77861 1.19893 1.21751 1.17499 1.21336 0.98508 0.95735 0.83186 1.45871 1.52700 1.32038 1.04626 1.18747 0.79939 0.83783 0.84125 1.90787 1.39758 1.28066 1.87332 1.20201 1.00180 0.97383 0.92744 1.21539 0.94717 0.92714 1.01032 1.21467 0.97912 1.00273 0.88695 1.17690 1.02306 0.96879 0.87765 1.23254 0.84322 0.83413 0.93970 1.73530 1.31740 1.27940 1.00580 1.21797 0.79698 0.79536 0.88566 1.91153 1.65829 1.74971 1.08766 1.85231 1.66011 1.51069 1.07086 1.42668 1.46424 1.25864 0.98831 0.64536 1.21294 0.93745 0.92700 0.99829 1.21260 0.97923 0.99746 0.90435 0.90625 0.93584 0.93789 0.93816 0.93575 0.90613 0.96806 0.96966 0.92961 0.92446 0.92393 0.74577 0.81483 0.79787 0.83337 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 8.05 71.98 0.58 -2.92 16 2 C -0.06 -1.79 0.54 -52.18 -0.03 -1.82 16 3 C -0.13 -3.49 8.05 71.98 0.58 -2.91 16 4 C -0.01 -0.23 3.11 29.85 0.09 -0.14 16 5 C -0.50 -25.54 8.20 25.60 0.21 -25.33 16 6 H 0.06 3.03 5.92 -2.91 -0.02 3.01 16 7 C 0.01 0.30 5.47 84.66 0.46 0.76 16 8 N -0.95 -56.61 13.96 21.45 0.30 -56.31 16 9 Si 0.93 42.78 27.47 68.60 1.88 44.67 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 13 C 0.14 3.66 4.56 86.38 0.39 4.06 16 14 N -0.70 -13.28 4.91 -465.86 -2.29 -15.57 16 15 C 0.55 11.57 7.78 86.82 0.68 12.25 16 16 O -0.58 -17.72 16.33 -3.84 -0.06 -17.79 16 17 C -0.10 -1.31 5.88 -20.04 -0.12 -1.43 16 18 C -0.08 -0.35 9.53 22.49 0.21 -0.14 16 19 C -0.06 0.00 9.68 22.48 0.22 0.22 16 20 C -0.04 -0.26 5.88 -20.04 -0.12 -0.38 16 21 C 0.42 3.60 7.80 136.81 1.07 4.67 16 22 N -0.57 -10.74 11.22 -432.39 -4.85 -15.59 16 23 C 0.55 12.31 9.60 130.00 1.25 13.56 16 24 O -0.52 -16.43 18.07 18.05 0.33 -16.11 16 25 O -0.07 -0.90 11.33 93.13 1.06 0.15 16 26 N -0.47 -1.61 6.74 -53.62 -0.36 -1.97 16 27 H 0.49 -3.78 8.00 -92.71 -0.74 -4.52 16 28 C -0.06 -0.56 9.68 22.48 0.22 -0.34 16 29 C -0.07 -0.99 9.58 22.49 0.22 -0.77 16 30 H 0.07 1.38 6.86 -2.38 -0.02 1.37 16 31 H 0.05 1.55 6.62 -2.38 -0.02 1.54 16 32 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.05 1.56 6.62 -2.39 -0.02 1.54 16 35 H 0.08 1.38 6.86 -2.39 -0.02 1.37 16 36 H 0.01 0.58 7.20 -2.38 -0.02 0.57 16 37 H 0.01 0.51 7.57 -2.39 -0.02 0.49 16 38 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.41 4.98 4.18 -92.70 -0.39 4.60 16 42 H 0.17 -0.13 6.39 -2.91 -0.02 -0.15 16 43 H 0.18 -1.85 7.13 -2.91 -0.02 -1.87 16 44 H 0.15 1.59 7.85 -2.91 -0.02 1.57 16 45 H 0.14 2.14 7.64 -2.91 -0.02 2.12 16 Total: -1.00 -83.98 373.88 1.80 -82.19 By element: Atomic # 1 Polarization: -2.89 SS G_CDS: -0.11 Total: -3.00 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 5.91 Total: -0.67 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -7.20 Total: -89.44 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: 1.32 Total: -33.74 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.88 Total: 44.67 kcal Total: -83.98 1.80 -82.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360410139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.354 kcal (2) G-P(sol) polarization free energy of solvation -83.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds