Wall clock time and date at job start Wed Apr 1 2020 02:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47013 * 2 1 4 4 C 1.52998 * 109.47365 * 175.23861 * 3 2 1 5 5 C 1.52999 * 109.47037 * 294.41327 * 4 3 2 6 6 C 1.50706 * 109.46965 * 295.23700 * 3 2 1 7 7 C 1.41377 * 126.80314 * 274.99978 * 6 3 2 8 8 C 1.35450 * 103.98525 * 179.97438 * 7 6 3 9 9 C 1.50698 * 126.77391 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47265 * 90.00466 * 9 8 7 11 11 S 1.65595 * 120.00182 * 165.00076 * 10 9 8 12 12 O 1.42101 * 106.40333 * 178.53811 * 11 10 9 13 13 O 1.42100 * 106.40169 * 311.45714 * 11 10 9 14 14 N 1.65597 * 107.22000 * 64.99671 * 11 10 9 15 15 C 1.46497 * 120.00195 * 269.99785 * 14 11 10 16 16 C 1.46504 * 120.00009 * 90.00155 * 14 11 10 17 17 C 1.50697 * 109.47035 * 94.99890 * 16 14 11 18 18 H 1.08004 * 120.00266 * 0.02562 * 17 16 14 19 19 C 1.37878 * 120.00078 * 179.97438 * 17 16 14 20 20 N 1.31520 * 119.99664 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00475 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47184 * 89.99675 * 21 19 17 23 23 H 1.48496 * 109.47734 * 210.00170 * 21 19 17 24 24 H 1.48505 * 109.47117 * 330.00103 * 21 19 17 25 25 O 1.34043 * 106.44780 * 0.02562 * 8 7 6 26 26 N 1.20921 * 111.56416 * 359.70761 * 25 8 7 27 27 H 1.08992 * 109.47278 * 306.91663 * 1 2 3 28 28 H 1.09000 * 109.46646 * 66.92059 * 1 2 3 29 29 H 1.09000 * 109.47012 * 186.91346 * 1 2 3 30 30 H 1.08994 * 109.47610 * 239.99703 * 2 1 3 31 31 H 1.09002 * 109.47200 * 119.99272 * 2 1 3 32 32 H 1.08994 * 109.47099 * 55.23520 * 3 2 1 33 33 H 1.09002 * 109.46845 * 54.41137 * 4 3 2 34 34 H 1.08996 * 109.47220 * 174.41435 * 4 3 2 35 35 H 1.09000 * 109.47310 * 66.03642 * 5 4 3 36 36 H 1.08996 * 109.47245 * 186.04341 * 5 4 3 37 37 H 1.08999 * 109.46972 * 306.03891 * 5 4 3 38 38 H 1.07998 * 128.00663 * 0.03732 * 7 6 3 39 39 H 1.09008 * 109.46976 * 210.00196 * 9 8 7 40 40 H 1.08999 * 109.47239 * 329.99768 * 9 8 7 41 41 H 0.97005 * 119.99794 * 344.99561 * 10 9 8 42 42 H 1.09004 * 109.46874 * 90.00128 * 15 14 11 43 43 H 1.09001 * 109.47447 * 210.00117 * 15 14 11 44 44 H 1.08999 * 109.47379 * 330.00608 * 15 14 11 45 45 H 1.08995 * 109.47112 * 214.99730 * 16 14 11 46 46 H 1.08994 * 109.46975 * 334.99911 * 16 14 11 47 47 H 0.97002 * 119.99948 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5653 1.4443 0.1197 5 6 3.9703 0.8852 1.4851 6 6 1.6362 2.1180 -1.2853 7 6 2.3269 2.0746 -2.5181 8 6 1.5663 2.8301 -3.3461 9 6 1.8365 3.1278 -4.7985 10 7 1.2054 2.1023 -5.6328 11 16 1.0133 2.3595 -7.2574 12 8 0.4112 1.1837 -7.7813 13 8 0.4407 3.6528 -7.3939 14 7 2.5273 2.4458 -7.9225 15 6 3.2120 3.7372 -8.0202 16 6 3.1821 1.2306 -8.4134 17 6 2.9324 1.0880 -9.8927 18 1 2.3450 1.8287 -10.4151 19 6 3.4546 0.0126 -10.5795 20 7 4.1702 -0.8891 -9.9435 21 14 3.1456 -0.1639 -12.4132 22 1 4.2256 0.5237 -13.1656 23 1 3.1288 -1.6037 -12.7762 24 1 1.8367 0.4482 -12.7559 25 8 0.5266 3.2615 -2.6184 26 7 0.5797 2.8527 -1.4816 27 1 -0.3633 0.6172 0.8216 28 1 -0.3632 0.4029 -0.9454 29 1 -0.3633 -1.0202 0.1237 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 1.6086 1.9804 0.8442 33 1 3.9922 0.8237 -0.6681 34 1 3.9364 2.4643 0.0202 35 1 3.6937 -0.1675 1.5433 36 1 5.0480 0.9854 1.6136 37 1 3.4576 1.4395 2.2713 38 1 3.2471 1.5579 -2.7470 39 1 1.4259 4.1054 -5.0514 40 1 2.9121 3.1288 -4.9752 41 1 0.9002 1.2726 -5.2337 42 1 3.7979 3.9070 -7.1168 43 1 3.8732 3.7334 -8.8867 44 1 2.4743 4.5322 -8.1295 45 1 4.2546 1.2968 -8.2308 46 1 2.7774 0.3637 -7.8914 47 1 4.5373 -1.6459 -10.4265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360543034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:02 Heat of formation + Delta-G solvation = -32.934987 kcal Electronic energy + Delta-G solvation = -28699.108973 eV Core-core repulsion = 24625.756360 eV Total energy + Delta-G solvation = -4073.352613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.09801 -37.82351 -36.74362 -35.87381 -35.52757 -35.23723 -33.32260 -32.46874 -32.15559 -31.47206 -27.82788 -27.39941 -26.23108 -25.09956 -23.68635 -23.15281 -22.34455 -21.29650 -20.04633 -19.11795 -17.78911 -17.71926 -17.16729 -16.71757 -16.36591 -15.98323 -15.50579 -15.05850 -15.00656 -14.64183 -14.42698 -14.29470 -14.11663 -13.74853 -13.46261 -13.34752 -12.95694 -12.62468 -12.40431 -12.37746 -12.19842 -12.08409 -11.72946 -11.68414 -11.67268 -11.57968 -11.45320 -11.25166 -11.20672 -11.10614 -11.01630 -10.91202 -10.73653 -10.55730 -10.13440 -10.07161 -9.81678 -9.65015 -9.55962 -8.47635 -8.13899 -6.09722 -4.13647 0.94403 1.39460 2.04641 2.87067 3.29826 3.36580 3.41891 3.47486 3.79838 4.05656 4.12154 4.42499 4.46368 4.58695 4.75368 4.80548 4.90138 4.93199 4.95787 5.02430 5.10248 5.15209 5.25889 5.34215 5.36205 5.40950 5.43445 5.55372 5.60318 5.62094 5.69773 5.75116 5.76920 5.85456 5.87419 5.92383 5.98872 6.04071 6.23783 6.50544 6.93483 7.18844 7.35301 7.54752 7.87822 8.10090 8.16462 8.88844 9.51888 10.98897 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015153 B = 0.002582 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.404118 B =10843.802198 C =11570.149480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.009 4.009 4 C -0.117 4.117 5 C -0.153 4.153 6 C 0.025 3.975 7 C -0.209 4.209 8 C -0.035 4.035 9 C 0.204 3.796 10 N -1.132 6.132 11 S 2.782 3.218 12 O -0.957 6.957 13 O -0.993 6.993 14 N -0.995 5.995 15 C 0.092 3.908 16 C 0.257 3.743 17 C -0.530 4.530 18 H 0.061 0.939 19 C 0.062 3.938 20 N -0.896 5.896 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.272 1.272 25 O 0.105 5.895 26 N -0.360 5.360 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.174 0.826 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.416 0.584 42 H 0.039 0.961 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.036 0.964 46 H 0.038 0.962 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.472 5.504 21.439 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.029 4.029 4 C -0.155 4.155 5 C -0.210 4.210 6 C -0.134 4.134 7 C -0.232 4.232 8 C -0.100 4.100 9 C 0.076 3.924 10 N -0.891 5.891 11 S 2.789 3.211 12 O -0.941 6.941 13 O -0.977 6.977 14 N -0.838 5.838 15 C -0.055 4.055 16 C 0.135 3.865 17 C -0.569 4.569 18 H 0.079 0.921 19 C -0.140 4.140 20 N -0.535 5.535 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.197 1.197 25 O 0.038 5.962 26 N -0.063 5.063 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.192 0.808 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.249 0.751 42 H 0.057 0.943 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.218 6.009 21.638 22.490 hybrid contribution 0.889 -0.984 -0.977 1.647 sum -0.329 5.025 20.661 21.266 Atomic orbital electron populations 1.21778 0.95487 1.01574 1.02162 1.21619 0.96346 0.94683 1.02852 1.19697 0.96243 0.95488 0.91441 1.21558 0.93483 1.01988 0.98462 1.21811 1.01384 1.01277 0.96539 1.23527 0.92453 0.99496 0.97889 1.22485 1.04034 1.04600 0.92072 1.24392 0.89622 0.99642 0.96374 1.19557 0.99076 0.92933 0.80822 1.56446 1.77131 1.27412 1.28130 1.02007 0.73629 0.73289 0.72148 1.93661 1.75133 1.49145 1.76153 1.93536 1.76211 1.42165 1.85753 1.57616 1.37197 1.15052 1.73928 1.21409 0.97932 0.84325 1.01816 1.19070 0.93509 0.79224 0.94691 1.21491 1.33062 1.08721 0.93632 0.92119 1.24931 0.94894 0.95384 0.98814 1.69916 1.34853 1.12459 1.36274 0.86508 0.78780 0.77361 0.84885 1.20606 1.21062 1.19686 1.84864 1.40029 1.55672 1.15675 1.73869 1.20486 1.14365 0.97533 0.92671 0.92822 0.92561 0.91361 0.90694 0.89549 0.91123 0.91533 0.92267 0.92367 0.92647 0.80845 0.88141 0.88274 0.75095 0.94267 0.90216 0.91397 0.94624 0.94383 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.61 37.16 0.36 -0.98 16 2 C -0.12 -0.90 5.26 -26.73 -0.14 -1.04 16 3 C -0.01 -0.08 2.32 -91.77 -0.21 -0.29 16 4 C -0.12 -0.78 4.92 -26.73 -0.13 -0.91 16 5 C -0.15 -0.84 9.53 37.16 0.35 -0.49 16 6 C 0.03 0.26 5.35 -82.10 -0.44 -0.17 16 7 C -0.21 -2.08 10.32 -39.38 -0.41 -2.49 16 8 C -0.04 -0.39 6.89 -35.30 -0.24 -0.63 16 9 C 0.20 2.22 6.81 -5.20 -0.04 2.18 16 10 N -1.13 -15.46 6.05 -11.65 -0.07 -15.53 16 11 S 2.78 51.57 6.10 -107.50 -0.66 50.92 16 12 O -0.96 -22.04 17.11 -57.17 -0.98 -23.02 16 13 O -0.99 -19.41 16.21 -57.17 -0.93 -20.34 16 14 N -0.99 -19.10 3.23 -123.06 -0.40 -19.50 16 15 C 0.09 1.42 10.68 59.85 0.64 2.06 16 16 C 0.26 6.13 5.08 -5.19 -0.03 6.10 16 17 C -0.53 -14.48 9.38 -34.44 -0.32 -14.80 16 18 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.90 -25.59 13.29 55.43 0.74 -24.86 16 21 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 O 0.10 1.34 11.20 17.17 0.19 1.53 16 26 N -0.36 -4.55 11.88 33.42 0.40 -4.15 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.57 7.44 -51.93 -0.39 0.19 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.47 6.51 -51.93 -0.34 0.13 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.46 7.80 -51.93 -0.41 0.05 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.30 6.78 -51.93 -0.35 -0.05 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.17 1.38 7.84 -52.49 -0.41 0.97 16 39 H 0.10 1.04 7.75 -51.92 -0.40 0.64 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.42 5.25 8.65 -34.47 -0.30 4.95 16 42 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 1.28 8.07 -51.93 -0.42 0.87 16 44 H 0.07 0.99 7.02 -51.93 -0.36 0.63 16 45 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 46 H 0.04 0.97 7.61 -51.93 -0.40 0.57 16 47 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 400.47 15.07 6.04 6.04 Total: -1.00 -33.75 400.47 -8.94 -42.69 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.54 Total: -0.44 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -0.71 Total: -9.84 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: 0.67 Total: -64.04 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -1.71 Total: -41.83 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 51.57 SS G_CDS: -0.66 Total: 50.92 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.75 -8.94 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360543034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.755 kcal (2) G-P(sol) polarization free energy of solvation -33.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds