Wall clock time and date at job start Wed Apr 1 2020 02:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47013 * 2 1 4 4 C 1.52998 * 109.47365 * 175.23861 * 3 2 1 5 5 C 1.52999 * 109.47037 * 294.41327 * 4 3 2 6 6 C 1.50706 * 109.46965 * 295.23700 * 3 2 1 7 7 C 1.41377 * 126.80314 * 274.99978 * 6 3 2 8 8 C 1.35450 * 103.98525 * 179.97438 * 7 6 3 9 9 C 1.50698 * 126.77391 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47265 * 90.00466 * 9 8 7 11 11 S 1.65595 * 120.00182 * 165.00076 * 10 9 8 12 12 O 1.42101 * 106.40333 * 178.53811 * 11 10 9 13 13 O 1.42100 * 106.40169 * 311.45714 * 11 10 9 14 14 N 1.65597 * 107.22000 * 64.99671 * 11 10 9 15 15 C 1.46497 * 120.00195 * 269.99785 * 14 11 10 16 16 C 1.46504 * 120.00009 * 90.00155 * 14 11 10 17 17 C 1.50697 * 109.47035 * 94.99890 * 16 14 11 18 18 H 1.08004 * 120.00266 * 0.02562 * 17 16 14 19 19 C 1.37878 * 120.00078 * 179.97438 * 17 16 14 20 20 N 1.31520 * 119.99664 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00475 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47184 * 89.99675 * 21 19 17 23 23 H 1.48496 * 109.47734 * 210.00170 * 21 19 17 24 24 H 1.48505 * 109.47117 * 330.00103 * 21 19 17 25 25 O 1.34043 * 106.44780 * 0.02562 * 8 7 6 26 26 N 1.20921 * 111.56416 * 359.70761 * 25 8 7 27 27 H 1.08992 * 109.47278 * 306.91663 * 1 2 3 28 28 H 1.09000 * 109.46646 * 66.92059 * 1 2 3 29 29 H 1.09000 * 109.47012 * 186.91346 * 1 2 3 30 30 H 1.08994 * 109.47610 * 239.99703 * 2 1 3 31 31 H 1.09002 * 109.47200 * 119.99272 * 2 1 3 32 32 H 1.08994 * 109.47099 * 55.23520 * 3 2 1 33 33 H 1.09002 * 109.46845 * 54.41137 * 4 3 2 34 34 H 1.08996 * 109.47220 * 174.41435 * 4 3 2 35 35 H 1.09000 * 109.47310 * 66.03642 * 5 4 3 36 36 H 1.08996 * 109.47245 * 186.04341 * 5 4 3 37 37 H 1.08999 * 109.46972 * 306.03891 * 5 4 3 38 38 H 1.07998 * 128.00663 * 0.03732 * 7 6 3 39 39 H 1.09008 * 109.46976 * 210.00196 * 9 8 7 40 40 H 1.08999 * 109.47239 * 329.99768 * 9 8 7 41 41 H 0.97005 * 119.99794 * 344.99561 * 10 9 8 42 42 H 1.09004 * 109.46874 * 90.00128 * 15 14 11 43 43 H 1.09001 * 109.47447 * 210.00117 * 15 14 11 44 44 H 1.08999 * 109.47379 * 330.00608 * 15 14 11 45 45 H 1.08995 * 109.47112 * 214.99730 * 16 14 11 46 46 H 1.08994 * 109.46975 * 334.99911 * 16 14 11 47 47 H 0.97002 * 119.99948 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5653 1.4443 0.1197 5 6 3.9703 0.8852 1.4851 6 6 1.6362 2.1180 -1.2853 7 6 2.3269 2.0746 -2.5181 8 6 1.5663 2.8301 -3.3461 9 6 1.8365 3.1278 -4.7985 10 7 1.2054 2.1023 -5.6328 11 16 1.0133 2.3595 -7.2574 12 8 0.4112 1.1837 -7.7813 13 8 0.4407 3.6528 -7.3939 14 7 2.5273 2.4458 -7.9225 15 6 3.2120 3.7372 -8.0202 16 6 3.1821 1.2306 -8.4134 17 6 2.9324 1.0880 -9.8927 18 1 2.3450 1.8287 -10.4151 19 6 3.4546 0.0126 -10.5795 20 7 4.1702 -0.8891 -9.9435 21 14 3.1456 -0.1639 -12.4132 22 1 4.2256 0.5237 -13.1656 23 1 3.1288 -1.6037 -12.7762 24 1 1.8367 0.4482 -12.7559 25 8 0.5266 3.2615 -2.6184 26 7 0.5797 2.8527 -1.4816 27 1 -0.3633 0.6172 0.8216 28 1 -0.3632 0.4029 -0.9454 29 1 -0.3633 -1.0202 0.1237 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 1.6086 1.9804 0.8442 33 1 3.9922 0.8237 -0.6681 34 1 3.9364 2.4643 0.0202 35 1 3.6937 -0.1675 1.5433 36 1 5.0480 0.9854 1.6136 37 1 3.4576 1.4395 2.2713 38 1 3.2471 1.5579 -2.7470 39 1 1.4259 4.1054 -5.0514 40 1 2.9121 3.1288 -4.9752 41 1 0.9002 1.2726 -5.2337 42 1 3.7979 3.9070 -7.1168 43 1 3.8732 3.7334 -8.8867 44 1 2.4743 4.5322 -8.1295 45 1 4.2546 1.2968 -8.2308 46 1 2.7774 0.3637 -7.8914 47 1 4.5373 -1.6459 -10.4265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360543034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:01 Heat of formation + Delta-G solvation = -56.256467 kcal Electronic energy + Delta-G solvation = -28700.120268 eV Core-core repulsion = 24625.756360 eV Total energy + Delta-G solvation = -4074.363908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.96061 -38.47067 -38.31664 -37.21196 -36.87273 -36.85112 -34.47278 -34.10220 -32.80733 -32.35449 -29.62274 -28.04645 -27.19383 -26.68338 -24.48207 -24.18118 -23.75702 -22.01394 -20.83986 -20.41226 -19.08090 -18.67571 -18.57368 -18.35503 -17.86689 -17.25306 -16.72855 -16.28705 -15.86209 -15.62590 -15.47139 -15.18038 -14.98218 -14.89253 -14.83504 -14.42172 -14.04869 -13.89568 -13.77948 -13.43883 -13.30887 -13.14738 -13.01905 -12.96595 -12.90334 -12.88896 -12.67571 -12.46002 -12.40748 -12.34452 -12.26817 -11.94274 -11.90782 -11.72452 -11.59164 -11.52279 -10.88943 -10.68707 -10.55989 -10.53609 -9.75774 -8.18488 -6.29180 -0.42263 0.42008 1.23873 1.40291 1.42868 1.52867 1.98225 2.15136 2.42220 2.64973 3.08276 3.13093 3.30586 3.51035 3.80560 3.96619 4.00856 4.07239 4.11049 4.15950 4.34296 4.37152 4.48368 4.52482 4.58833 4.64428 4.72581 4.75060 4.81118 4.83284 4.90059 5.00118 5.04487 5.09141 5.15855 5.19805 5.22955 5.25418 5.28989 5.40704 5.49470 5.49546 5.72942 5.82986 6.03630 6.14554 6.79345 7.24832 7.39541 8.88785 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015153 B = 0.002582 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.404118 B =10843.802198 C =11570.149480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.009 4.009 4 C -0.113 4.113 5 C -0.152 4.152 6 C 0.026 3.974 7 C -0.202 4.202 8 C -0.041 4.041 9 C 0.198 3.802 10 N -1.120 6.120 11 S 2.803 3.197 12 O -1.008 7.008 13 O -1.004 7.004 14 N -0.999 5.999 15 C 0.082 3.918 16 C 0.272 3.728 17 C -0.549 4.549 18 H 0.051 0.949 19 C 0.013 3.987 20 N -0.923 5.923 21 Si 0.952 3.048 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.276 1.276 25 O 0.084 5.916 26 N -0.385 5.385 27 H 0.054 0.946 28 H 0.029 0.971 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.197 0.803 39 H 0.107 0.893 40 H 0.129 0.871 41 H 0.422 0.578 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.034 0.966 46 H 0.018 0.982 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 5.787 22.352 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.028 4.028 4 C -0.151 4.151 5 C -0.209 4.209 6 C -0.133 4.133 7 C -0.224 4.224 8 C -0.106 4.106 9 C 0.072 3.928 10 N -0.883 5.883 11 S 2.810 3.190 12 O -0.992 6.992 13 O -0.988 6.988 14 N -0.842 5.842 15 C -0.063 4.063 16 C 0.148 3.852 17 C -0.588 4.588 18 H 0.069 0.931 19 C -0.186 4.186 20 N -0.563 5.563 21 Si 0.777 3.223 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.201 1.201 25 O 0.019 5.981 26 N -0.090 5.090 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.214 0.786 39 H 0.125 0.875 40 H 0.146 0.854 41 H 0.257 0.743 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.052 0.948 46 H 0.036 0.964 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.071 6.330 22.535 23.407 hybrid contribution 0.470 -1.025 -1.140 1.604 sum 0.541 5.306 21.394 22.049 Atomic orbital electron populations 1.21774 0.96496 1.01887 1.00803 1.21622 0.95370 0.94478 1.03681 1.19810 0.97408 0.95413 0.90159 1.21539 0.92057 1.02078 0.99400 1.21807 1.01777 1.01529 0.95770 1.24000 0.91721 0.98587 0.99002 1.22801 1.04397 1.03733 0.91430 1.24445 0.89629 1.00168 0.96388 1.19877 1.00541 0.92178 0.80245 1.55967 1.77292 1.28458 1.26584 1.01117 0.73055 0.72015 0.72785 1.93589 1.76430 1.51137 1.78033 1.93517 1.76388 1.42411 1.86439 1.57451 1.37123 1.15056 1.74524 1.21690 0.98319 0.82605 1.03657 1.18628 0.93356 0.80428 0.92786 1.21866 1.32730 1.08593 0.95630 0.93074 1.25688 0.94848 0.95261 1.02840 1.69994 1.35621 1.12914 1.37738 0.85644 0.78695 0.77522 0.80391 1.19066 1.20550 1.20114 1.84832 1.40881 1.56412 1.15970 1.73876 1.21725 1.15660 0.97783 0.92666 0.95204 0.91723 0.91593 0.88725 0.89845 0.90617 0.91794 0.91713 0.91792 0.92549 0.78623 0.87450 0.85370 0.74320 0.89967 0.91165 0.90554 0.94788 0.96355 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.61 71.98 0.69 -1.87 16 2 C -0.11 -1.56 5.26 30.60 0.16 -1.40 16 3 C -0.01 -0.13 2.32 -11.54 -0.03 -0.15 16 4 C -0.11 -1.25 4.92 30.59 0.15 -1.10 16 5 C -0.15 -1.32 9.53 71.98 0.69 -0.64 16 6 C 0.03 0.51 5.35 43.58 0.23 0.75 16 7 C -0.20 -3.62 10.32 22.40 0.23 -3.39 16 8 C -0.04 -0.86 6.89 25.04 0.17 -0.68 16 9 C 0.20 3.89 6.81 85.63 0.58 4.47 16 10 N -1.12 -29.34 6.05 -190.79 -1.15 -30.50 16 11 S 2.80 102.74 6.10 -56.49 -0.34 102.39 16 12 O -1.01 -47.24 17.11 -128.00 -2.19 -49.43 16 13 O -1.00 -38.39 16.21 -128.00 -2.07 -40.46 16 14 N -1.00 -37.53 3.23 -543.24 -1.75 -39.28 16 15 C 0.08 2.38 10.68 127.77 1.36 3.75 16 16 C 0.27 12.96 5.08 85.63 0.43 13.40 16 17 C -0.55 -30.17 9.38 25.60 0.24 -29.93 16 18 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 19 C 0.01 0.73 5.46 84.65 0.46 1.19 16 20 N -0.92 -52.77 13.29 21.45 0.28 -52.49 16 21 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 O 0.08 2.10 11.20 71.60 0.80 2.90 16 26 N -0.38 -9.63 11.88 -49.55 -0.59 -10.22 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.03 0.63 7.44 -2.39 -0.02 0.62 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 0.95 6.51 -2.39 -0.02 0.93 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 0.77 7.80 -2.39 -0.02 0.76 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.50 6.78 -2.39 -0.02 0.48 16 36 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 38 H 0.20 2.53 7.84 -2.91 -0.02 2.51 16 39 H 0.11 2.00 7.75 -2.38 -0.02 1.98 16 40 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.42 10.36 8.65 -96.74 -0.84 9.52 16 42 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 44 H 0.08 2.08 7.02 -2.39 -0.02 2.06 16 45 H 0.03 1.62 8.11 -2.39 -0.02 1.61 16 46 H 0.02 0.95 7.61 -2.39 -0.02 0.93 16 47 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -73.00 400.47 0.53 -72.47 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.13 Total: 14.24 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: 5.38 Total: -15.61 kcal Atomic # 7 Polarization: -129.27 SS G_CDS: -3.21 Total: -132.48 kcal Atomic # 8 Polarization: -83.53 SS G_CDS: -3.46 Total: -86.99 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 102.74 SS G_CDS: -0.34 Total: 102.39 kcal Total: -73.00 0.53 -72.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360543034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.215 kcal (2) G-P(sol) polarization free energy of solvation -72.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds