Wall clock time and date at job start Wed Apr 1 2020 03:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35813 * 116.99630 * 2 1 4 4 C 1.38782 * 119.93465 * 359.73070 * 3 2 1 5 5 C 1.37830 * 120.17533 * 180.27894 * 4 3 2 6 6 C 1.39776 * 120.04507 * 359.97438 * 5 4 3 7 7 C 1.43194 * 120.06302 * 179.97438 * 6 5 4 8 8 N 6.70177 * 116.89909 * 359.77839 * 2 1 3 9 9 C 1.39684 * 119.86763 * 0.02562 * 6 5 4 10 10 C 1.38404 * 119.82564 * 359.97438 * 9 6 5 11 11 N 1.39907 * 120.02075 * 179.97438 * 10 9 6 12 12 C 1.34771 * 120.00259 * 325.30814 * 11 10 9 13 13 O 1.21399 * 120.00087 * 4.48311 * 12 11 10 14 14 C 1.49333 * 120.00087 * 184.47970 * 12 11 10 15 15 O 1.21362 * 119.99952 * 0.02562 * 14 12 11 16 16 N 1.34781 * 120.00090 * 180.02562 * 14 12 11 17 17 C 1.46494 * 119.99978 * 180.02562 * 16 14 12 18 18 C 1.53006 * 109.47191 * 179.97438 * 17 16 14 19 19 C 1.52994 * 109.46955 * 299.99843 * 18 17 16 20 20 C 1.53000 * 109.46808 * 59.99843 * 18 17 16 21 21 C 1.50704 * 109.47164 * 179.97438 * 18 17 16 22 22 H 1.07997 * 119.99566 * 359.97438 * 21 18 17 23 23 C 1.37872 * 119.99775 * 180.02562 * 21 18 17 24 24 N 1.31518 * 119.99980 * 0.02562 * 23 21 18 25 25 Si 1.86801 * 119.99981 * 179.97438 * 23 21 18 26 26 H 1.48501 * 109.47047 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47104 * 119.99944 * 25 23 21 28 28 H 1.48497 * 109.47331 * 240.00283 * 25 23 21 29 29 H 1.09000 * 109.47036 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47144 * 299.99254 * 1 2 3 31 31 H 1.09001 * 109.47140 * 59.99833 * 1 2 3 32 32 H 1.07997 * 119.91321 * 0.25303 * 4 3 2 33 33 H 1.07996 * 119.97616 * 179.97438 * 5 4 3 34 34 H 1.07999 * 120.08246 * 180.02562 * 9 6 5 35 35 H 0.96998 * 119.99293 * 145.30566 * 11 10 9 36 36 H 0.97003 * 119.99488 * 0.02562 * 16 14 12 37 37 H 1.09001 * 109.47026 * 299.99526 * 17 16 14 38 38 H 1.08998 * 109.47419 * 60.00067 * 17 16 14 39 39 H 1.09003 * 109.47034 * 60.00154 * 19 18 17 40 40 H 1.09000 * 109.46997 * 179.97438 * 19 18 17 41 41 H 1.08998 * 109.47307 * 299.99638 * 19 18 17 42 42 H 1.09001 * 109.47519 * 60.00325 * 20 18 17 43 43 H 1.09000 * 109.47101 * 180.02562 * 20 18 17 44 44 H 1.09003 * 109.47449 * 300.00010 * 20 18 17 45 45 H 0.97005 * 119.99646 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.2883 2.3731 -0.0057 5 6 1.9088 3.6039 -0.0115 6 6 3.3042 3.6841 -0.0112 7 6 3.9493 4.9625 -0.0178 8 7 4.4610 5.9766 -0.0231 9 6 4.0682 2.5147 -0.0055 10 6 3.4395 1.2817 0.0003 11 7 4.2007 0.1078 0.0055 12 6 5.3723 0.0615 -0.6589 13 8 5.8069 1.0610 -1.1935 14 6 6.1360 -1.2194 -0.7374 15 8 5.7013 -2.2188 -0.2033 16 7 7.3080 -1.2657 -1.4014 17 6 8.0568 -2.5223 -1.4789 18 6 9.3399 -2.3027 -2.2830 19 6 8.9829 -1.8340 -3.6949 20 6 10.1977 -1.2394 -1.5942 21 6 10.1106 -3.5954 -2.3622 22 1 9.7241 -4.4844 -1.8862 23 6 11.3095 -3.6426 -3.0414 24 7 11.7808 -2.5595 -3.6197 25 14 12.2652 -5.2447 -3.1389 26 1 11.5259 -6.3072 -2.4111 27 1 12.4256 -5.6396 -4.5614 28 1 13.6035 -5.0611 -2.5222 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2099 2.3137 -0.0059 33 1 1.3164 4.5068 -0.0163 34 1 5.1466 2.5726 -0.0048 35 1 3.8851 -0.6726 0.4874 36 1 7.6555 -0.4668 -1.8280 37 1 8.3108 -2.8565 -0.4730 38 1 7.4459 -3.2797 -1.9700 39 1 8.4257 -0.8989 -3.6373 40 1 9.8970 -1.6771 -4.2677 41 1 8.3718 -2.5915 -4.1857 42 1 10.4521 -1.5734 -0.5883 43 1 11.1115 -1.0826 -2.1673 44 1 9.6405 -0.3044 -1.5366 45 1 12.6245 -2.5927 -4.0972 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411632904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:06 Heat of formation + Delta-G solvation = -45.412048 kcal Electronic energy + Delta-G solvation = -29238.330060 eV Core-core repulsion = 25028.992450 eV Total energy + Delta-G solvation = -4209.337610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.41166 -40.21354 -38.72192 -38.10274 -36.58366 -36.42750 -35.16658 -33.36012 -31.10090 -30.92920 -30.45221 -27.96269 -26.48870 -25.75021 -25.36003 -24.26598 -23.81798 -22.49451 -20.28644 -19.69318 -19.03273 -18.58959 -18.20884 -16.95432 -16.81701 -16.39848 -16.07240 -15.81048 -15.52369 -14.96129 -14.84590 -14.63054 -14.54414 -14.21391 -14.11003 -13.95809 -13.63543 -13.10316 -12.97262 -12.93490 -12.74287 -12.69304 -12.43030 -12.25890 -11.88388 -11.51241 -11.43525 -11.41547 -11.20976 -10.91756 -10.80945 -10.69132 -10.43153 -10.22248 -9.68551 -9.64195 -9.32675 -9.15924 -8.82430 -8.68288 -8.40387 -8.35999 -6.04895 -4.15791 0.36325 0.68842 1.50365 2.24418 2.47200 2.56460 2.68041 3.25746 3.29056 3.34623 3.38250 3.49783 3.55610 3.77282 4.24994 4.35146 4.37542 4.61365 4.63705 4.68278 4.71468 4.96269 5.04477 5.22002 5.25155 5.33430 5.58165 5.77728 5.89029 6.06115 6.17557 6.19183 6.42922 6.55049 6.70621 6.78538 6.81883 6.87586 6.91531 6.97278 7.26037 7.30010 7.50850 7.52359 7.66559 7.81383 7.97616 8.08456 8.23437 8.36093 8.84738 9.50448 10.96552 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016872 B = 0.002239 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.185381 B =12500.384636 C =13812.503410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.139 3.861 4 C -0.194 4.194 5 C -0.041 4.041 6 C -0.049 4.049 7 C 0.260 3.740 8 N -0.418 5.418 9 C -0.037 4.037 10 C 0.117 3.883 11 N -0.639 5.639 12 C 0.510 3.490 13 O -0.502 6.502 14 C 0.499 3.501 15 O -0.529 6.529 16 N -0.677 5.677 17 C 0.128 3.872 18 C 0.056 3.944 19 C -0.134 4.134 20 C -0.134 4.134 21 C -0.507 4.507 22 H 0.059 0.941 23 C 0.066 3.934 24 N -0.884 5.884 25 Si 0.894 3.106 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.159 0.841 35 H 0.429 0.571 36 H 0.412 0.588 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.008 0.992 40 H 0.087 0.913 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.087 0.913 44 H 0.008 0.992 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.920 8.398 7.742 26.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.090 3.910 4 C -0.214 4.214 5 C -0.062 4.062 6 C -0.054 4.054 7 C -0.055 4.055 8 N -0.093 5.093 9 C -0.059 4.059 10 C 0.022 3.978 11 N -0.287 5.287 12 C 0.292 3.708 13 O -0.376 6.376 14 C 0.278 3.722 15 O -0.407 6.407 16 N -0.329 5.329 17 C 0.006 3.994 18 C 0.055 3.945 19 C -0.192 4.192 20 C -0.192 4.192 21 C -0.546 4.546 22 H 0.077 0.923 23 C -0.135 4.135 24 N -0.522 5.522 25 Si 0.722 3.278 26 H -0.197 1.197 27 H -0.211 1.211 28 H -0.210 1.210 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.162 0.838 33 H 0.156 0.844 34 H 0.177 0.823 35 H 0.267 0.733 36 H 0.249 0.751 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.027 0.973 40 H 0.106 0.894 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.106 0.894 44 H 0.027 0.973 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.800 9.738 7.580 25.926 hybrid contribution 0.064 -1.137 -0.105 1.143 sum -22.736 8.602 7.475 25.432 Atomic orbital electron populations 1.23186 0.77342 1.04706 1.01712 1.86086 1.22227 1.25940 1.87801 1.19052 0.90337 0.85426 0.96147 1.20974 1.00493 0.90906 1.08986 1.20945 0.92159 0.97988 0.95091 1.15701 0.92379 0.86338 1.10941 1.25479 0.93653 0.92695 0.93663 1.81267 1.07602 1.11370 1.09092 1.21225 1.01752 0.88450 0.94516 1.16768 0.86799 0.86780 1.07492 1.42964 1.20386 1.14448 1.50911 1.20738 0.81618 0.90090 0.78325 1.90768 1.67120 1.35654 1.44016 1.19636 0.83147 0.87790 0.81605 1.90757 1.68435 1.35330 1.46169 1.46233 1.19616 1.16040 1.50962 1.21990 0.93688 0.82549 1.01176 1.18391 0.88874 0.95927 0.91296 1.21863 1.01478 0.96177 0.99673 1.21867 1.02462 0.95360 0.99518 1.20978 1.04989 0.94631 1.33956 0.92259 1.24886 0.97211 0.96365 0.95054 1.69819 1.20296 1.27148 1.34969 0.86500 0.79831 0.83714 0.77741 1.19746 1.21053 1.21048 0.87683 0.92128 0.92118 0.83768 0.84376 0.82345 0.73251 0.75085 0.91804 0.91824 0.97272 0.89416 0.95293 0.95288 0.89403 0.97279 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 9.81 101.05 0.99 1.08 16 2 O -0.31 -2.32 10.04 -19.15 -0.19 -2.52 16 3 C 0.14 1.11 6.71 -38.88 -0.26 0.85 16 4 C -0.19 -1.09 9.01 -39.53 -0.36 -1.45 16 5 C -0.04 -0.25 9.74 -39.16 -0.38 -0.63 16 6 C -0.05 -0.44 5.74 -106.86 -0.61 -1.05 16 7 C 0.26 2.83 15.32 -22.48 -0.34 2.49 16 8 N -0.42 -5.54 18.54 41.84 0.78 -4.76 16 9 C -0.04 -0.38 8.40 -38.98 -0.33 -0.71 16 10 C 0.12 1.18 6.31 -83.61 -0.53 0.66 16 11 N -0.64 -7.29 5.17 -10.22 -0.05 -7.34 16 12 C 0.51 7.20 7.73 -11.64 -0.09 7.11 16 13 O -0.50 -7.77 13.89 5.45 0.08 -7.70 16 14 C 0.50 8.19 7.89 -11.64 -0.09 8.10 16 15 O -0.53 -9.53 16.48 5.49 0.09 -9.44 16 16 N -0.68 -11.92 4.95 -60.77 -0.30 -12.22 16 17 C 0.13 2.57 4.50 -4.04 -0.02 2.55 16 18 C 0.06 1.26 0.50 -155.66 -0.08 1.19 16 19 C -0.13 -3.01 8.08 37.15 0.30 -2.71 16 20 C -0.13 -3.01 8.08 37.16 0.30 -2.71 16 21 C -0.51 -12.92 8.01 -34.44 -0.28 -13.19 16 22 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 23 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 24 N -0.88 -23.36 9.35 55.43 0.52 -22.84 16 25 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.12 7.66 -51.93 -0.40 -0.28 16 31 H 0.06 0.15 7.64 -51.93 -0.40 -0.25 16 32 H 0.14 0.39 6.27 -52.49 -0.33 0.06 16 33 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 34 H 0.16 1.87 6.19 -52.49 -0.32 1.55 16 35 H 0.43 4.46 8.04 -40.82 -0.33 4.13 16 36 H 0.41 7.12 5.63 -40.82 -0.23 6.89 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 40 H 0.09 2.18 6.07 -51.93 -0.32 1.87 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 44 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 45 H 0.26 6.63 8.31 -40.82 -0.34 6.30 16 LS Contribution 382.38 15.07 5.76 5.76 Total: -1.00 -29.86 382.38 -5.64 -35.49 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.43 Total: 6.99 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -1.87 Total: 3.21 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.94 Total: -47.16 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.03 Total: -19.65 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.86 -5.64 -35.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411632904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.918 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds