Wall clock time and date at job start Wed Apr 1 2020 03:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35813 * 116.99630 * 2 1 4 4 C 1.38782 * 119.93465 * 359.73070 * 3 2 1 5 5 C 1.37830 * 120.17533 * 180.27894 * 4 3 2 6 6 C 1.39776 * 120.04507 * 359.97438 * 5 4 3 7 7 C 1.43194 * 120.06302 * 179.97438 * 6 5 4 8 8 N 6.70177 * 116.89909 * 359.77839 * 2 1 3 9 9 C 1.39684 * 119.86763 * 0.02562 * 6 5 4 10 10 C 1.38404 * 119.82564 * 359.97438 * 9 6 5 11 11 N 1.39907 * 120.02075 * 179.97438 * 10 9 6 12 12 C 1.34771 * 120.00259 * 325.30814 * 11 10 9 13 13 O 1.21399 * 120.00087 * 4.48311 * 12 11 10 14 14 C 1.49333 * 120.00087 * 184.47970 * 12 11 10 15 15 O 1.21362 * 119.99952 * 0.02562 * 14 12 11 16 16 N 1.34781 * 120.00090 * 180.02562 * 14 12 11 17 17 C 1.46494 * 119.99978 * 180.02562 * 16 14 12 18 18 C 1.53006 * 109.47191 * 179.97438 * 17 16 14 19 19 C 1.52994 * 109.46955 * 299.99843 * 18 17 16 20 20 C 1.53000 * 109.46808 * 59.99843 * 18 17 16 21 21 C 1.50704 * 109.47164 * 179.97438 * 18 17 16 22 22 H 1.07997 * 119.99566 * 359.97438 * 21 18 17 23 23 C 1.37872 * 119.99775 * 180.02562 * 21 18 17 24 24 N 1.31518 * 119.99980 * 0.02562 * 23 21 18 25 25 Si 1.86801 * 119.99981 * 179.97438 * 23 21 18 26 26 H 1.48501 * 109.47047 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47104 * 119.99944 * 25 23 21 28 28 H 1.48497 * 109.47331 * 240.00283 * 25 23 21 29 29 H 1.09000 * 109.47036 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47144 * 299.99254 * 1 2 3 31 31 H 1.09001 * 109.47140 * 59.99833 * 1 2 3 32 32 H 1.07997 * 119.91321 * 0.25303 * 4 3 2 33 33 H 1.07996 * 119.97616 * 179.97438 * 5 4 3 34 34 H 1.07999 * 120.08246 * 180.02562 * 9 6 5 35 35 H 0.96998 * 119.99293 * 145.30566 * 11 10 9 36 36 H 0.97003 * 119.99488 * 0.02562 * 16 14 12 37 37 H 1.09001 * 109.47026 * 299.99526 * 17 16 14 38 38 H 1.08998 * 109.47419 * 60.00067 * 17 16 14 39 39 H 1.09003 * 109.47034 * 60.00154 * 19 18 17 40 40 H 1.09000 * 109.46997 * 179.97438 * 19 18 17 41 41 H 1.08998 * 109.47307 * 299.99638 * 19 18 17 42 42 H 1.09001 * 109.47519 * 60.00325 * 20 18 17 43 43 H 1.09000 * 109.47101 * 180.02562 * 20 18 17 44 44 H 1.09003 * 109.47449 * 300.00010 * 20 18 17 45 45 H 0.97005 * 119.99646 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.2883 2.3731 -0.0057 5 6 1.9088 3.6039 -0.0115 6 6 3.3042 3.6841 -0.0112 7 6 3.9493 4.9625 -0.0178 8 7 4.4610 5.9766 -0.0231 9 6 4.0682 2.5147 -0.0055 10 6 3.4395 1.2817 0.0003 11 7 4.2007 0.1078 0.0055 12 6 5.3723 0.0615 -0.6589 13 8 5.8069 1.0610 -1.1935 14 6 6.1360 -1.2194 -0.7374 15 8 5.7013 -2.2188 -0.2033 16 7 7.3080 -1.2657 -1.4014 17 6 8.0568 -2.5223 -1.4789 18 6 9.3399 -2.3027 -2.2830 19 6 8.9829 -1.8340 -3.6949 20 6 10.1977 -1.2394 -1.5942 21 6 10.1106 -3.5954 -2.3622 22 1 9.7241 -4.4844 -1.8862 23 6 11.3095 -3.6426 -3.0414 24 7 11.7808 -2.5595 -3.6197 25 14 12.2652 -5.2447 -3.1389 26 1 11.5259 -6.3072 -2.4111 27 1 12.4256 -5.6396 -4.5614 28 1 13.6035 -5.0611 -2.5222 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2099 2.3137 -0.0059 33 1 1.3164 4.5068 -0.0163 34 1 5.1466 2.5726 -0.0048 35 1 3.8851 -0.6726 0.4874 36 1 7.6555 -0.4668 -1.8280 37 1 8.3108 -2.8565 -0.4730 38 1 7.4459 -3.2797 -1.9700 39 1 8.4257 -0.8989 -3.6373 40 1 9.8970 -1.6771 -4.2677 41 1 8.3718 -2.5915 -4.1857 42 1 10.4521 -1.5734 -0.5883 43 1 11.1115 -1.0826 -2.1673 44 1 9.6405 -0.3044 -1.5366 45 1 12.6245 -2.5927 -4.0972 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411632904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:05 Heat of formation + Delta-G solvation = -64.683390 kcal Electronic energy + Delta-G solvation = -29239.165728 eV Core-core repulsion = 25028.992450 eV Total energy + Delta-G solvation = -4210.173278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.30931 -41.15635 -39.83746 -38.85988 -38.21252 -37.32941 -36.13082 -34.97057 -32.75806 -31.71172 -31.18299 -28.35854 -27.92641 -27.58538 -27.22965 -25.48909 -24.45501 -23.41067 -21.45693 -20.73882 -20.55423 -19.45702 -19.05373 -18.11755 -17.72639 -17.49802 -17.23660 -16.73680 -16.69283 -16.60009 -16.08355 -15.57835 -15.45587 -15.09437 -15.01291 -14.86339 -14.78441 -14.77386 -14.36810 -14.04665 -13.82769 -13.49519 -13.37344 -13.21903 -13.18872 -13.09273 -12.71125 -12.65541 -12.54865 -12.28090 -12.16833 -12.10328 -11.97227 -11.61664 -11.50603 -11.29444 -10.77706 -10.65592 -10.41381 -10.14534 -9.81417 -9.05994 -8.01351 -6.17729 -0.30508 -0.06847 0.45477 1.18817 1.43533 1.48001 1.56967 1.61357 1.80764 2.09317 2.17900 2.44305 2.57721 2.78556 2.89069 3.22895 3.36077 3.74568 3.86730 4.05181 4.26148 4.34418 4.43721 4.48262 4.53461 4.59101 4.68248 4.71194 4.88241 4.92921 5.04106 5.04935 5.06789 5.12624 5.17575 5.20115 5.22853 5.48209 5.49557 5.65021 5.68310 5.82314 6.11649 6.19220 6.23802 6.32176 6.41492 6.44552 6.64351 6.85073 6.91261 7.50543 8.98059 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016872 B = 0.002239 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.185381 B =12500.384636 C =13812.503410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.327 6.327 3 C 0.150 3.850 4 C -0.181 4.181 5 C -0.017 4.017 6 C -0.064 4.064 7 C 0.283 3.717 8 N -0.468 5.468 9 C -0.044 4.044 10 C 0.086 3.914 11 N -0.624 5.624 12 C 0.515 3.485 13 O -0.520 6.520 14 C 0.503 3.497 15 O -0.545 6.545 16 N -0.679 5.679 17 C 0.143 3.857 18 C 0.050 3.950 19 C -0.125 4.125 20 C -0.125 4.125 21 C -0.523 4.523 22 H 0.053 0.947 23 C 0.025 3.975 24 N -0.902 5.902 25 Si 0.948 3.052 26 H -0.271 1.271 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.184 0.816 33 H 0.171 0.829 34 H 0.136 0.864 35 H 0.433 0.567 36 H 0.414 0.586 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.030 0.970 40 H 0.062 0.938 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.062 0.938 44 H 0.030 0.970 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.195 8.657 8.290 29.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.100 3.900 4 C -0.200 4.200 5 C -0.038 4.038 6 C -0.068 4.068 7 C -0.031 4.031 8 N -0.144 5.144 9 C -0.067 4.067 10 C -0.008 4.008 11 N -0.272 5.272 12 C 0.298 3.702 13 O -0.395 6.395 14 C 0.283 3.717 15 O -0.423 6.423 16 N -0.331 5.331 17 C 0.020 3.980 18 C 0.050 3.950 19 C -0.183 4.183 20 C -0.183 4.183 21 C -0.562 4.562 22 H 0.071 0.929 23 C -0.174 4.174 24 N -0.541 5.541 25 Si 0.775 3.225 26 H -0.195 1.195 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.132 0.868 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.201 0.799 33 H 0.188 0.812 34 H 0.154 0.846 35 H 0.272 0.728 36 H 0.252 0.748 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.081 0.919 44 H 0.049 0.951 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -26.125 10.002 8.148 29.136 hybrid contribution 0.895 -1.250 -0.231 1.555 sum -25.229 8.752 7.917 27.853 Atomic orbital electron populations 1.23537 0.75057 1.06059 1.03435 1.86081 1.24605 1.25847 1.87369 1.19149 0.89522 0.86608 0.94690 1.21379 1.02184 0.89447 1.06993 1.21322 0.90828 0.99607 0.92054 1.15733 0.93571 0.84683 1.12841 1.25774 0.92582 0.92605 0.92189 1.81281 1.08948 1.13016 1.11187 1.21033 1.00954 0.89360 0.95368 1.16893 0.87840 0.85846 1.10238 1.42794 1.19407 1.15234 1.49721 1.20160 0.82379 0.88704 0.79005 1.90773 1.67786 1.35674 1.45286 1.19982 0.82618 0.88567 0.80516 1.90742 1.68717 1.36292 1.46574 1.46061 1.20141 1.15165 1.51735 1.21579 0.92742 0.83490 1.00167 1.18381 0.89817 0.94953 0.91869 1.21714 1.00385 0.97107 0.99060 1.21721 1.01571 0.96351 0.98665 1.21276 1.05522 0.95588 1.33817 0.92898 1.25502 0.98087 0.98802 0.95039 1.69941 1.20427 1.28381 1.35336 0.85659 0.78538 0.80796 0.77515 1.19506 1.20974 1.21015 0.86802 0.90028 0.90616 0.79851 0.81168 0.84598 0.72762 0.74830 0.92445 0.92460 0.95148 0.91901 0.95635 0.95663 0.91895 0.95147 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 113.37 1.11 1.15 16 2 O -0.33 -3.97 10.04 -91.45 -0.92 -4.88 16 3 C 0.15 1.96 6.71 22.72 0.15 2.11 16 4 C -0.18 -1.22 9.01 22.30 0.20 -1.02 16 5 C -0.02 -0.15 9.74 22.55 0.22 0.07 16 6 C -0.06 -1.03 5.74 -21.31 -0.12 -1.15 16 7 C 0.28 5.99 15.32 88.33 1.35 7.34 16 8 N -0.47 -12.46 18.54 19.00 0.35 -12.11 16 9 C -0.04 -0.90 8.40 22.66 0.19 -0.71 16 10 C 0.09 1.64 6.31 38.22 0.24 1.88 16 11 N -0.62 -13.87 5.17 -304.60 -1.57 -15.44 16 12 C 0.52 14.51 7.73 87.23 0.67 15.18 16 13 O -0.52 -16.22 13.89 -3.40 -0.05 -16.26 16 14 C 0.50 16.42 7.89 87.23 0.69 17.11 16 15 O -0.54 -19.47 16.48 -3.29 -0.05 -19.53 16 16 N -0.68 -23.81 4.95 -464.53 -2.30 -26.11 16 17 C 0.14 5.77 4.50 86.38 0.39 6.16 16 18 C 0.05 2.30 0.50 -52.93 -0.03 2.28 16 19 C -0.12 -5.63 8.08 71.98 0.58 -5.04 16 20 C -0.13 -5.66 8.08 71.98 0.58 -5.07 16 21 C -0.52 -26.94 8.01 25.60 0.21 -26.74 16 22 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 23 C 0.03 1.32 5.15 84.65 0.44 1.75 16 24 N -0.90 -48.35 9.35 21.45 0.20 -48.15 16 25 Si 0.95 42.08 29.54 68.60 2.03 44.11 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 27 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 28 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 29 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.08 -0.07 7.66 -2.39 -0.02 -0.09 16 31 H 0.08 0.03 7.64 -2.39 -0.02 0.01 16 32 H 0.18 -0.16 6.27 -2.91 -0.02 -0.18 16 33 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 34 H 0.14 3.35 6.19 -2.91 -0.02 3.33 16 35 H 0.43 8.69 8.04 -92.71 -0.74 7.94 16 36 H 0.41 14.18 5.63 -92.71 -0.52 13.66 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.03 1.19 6.86 -2.39 -0.02 1.18 16 40 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 41 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 44 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 45 H 0.26 13.40 8.31 -92.70 -0.77 12.63 16 Total: -1.00 -66.03 382.38 4.37 -61.67 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -0.19 Total: 21.41 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 6.88 Total: 15.31 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -3.32 Total: -101.82 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -1.02 Total: -40.67 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -66.03 4.37 -61.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411632904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.017 kcal (2) G-P(sol) polarization free energy of solvation -66.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds