Wall clock time and date at job start Wed Apr 1 2020 03:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47073 * 2 1 4 4 C 1.50699 * 109.47575 * 239.99235 * 2 1 3 5 5 H 1.07993 * 120.00369 * 240.00703 * 4 2 1 6 6 C 1.37876 * 119.99365 * 59.99982 * 4 2 1 7 7 N 1.31514 * 120.00615 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99924 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47374 * 59.99695 * 8 6 4 10 10 H 1.48498 * 109.47532 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46779 * 300.00111 * 8 6 4 12 12 C 1.53001 * 109.46770 * 119.99412 * 2 1 3 13 13 N 1.46498 * 109.47287 * 299.99863 * 12 2 1 14 14 C 1.34779 * 119.99728 * 179.97438 * 13 12 2 15 15 O 1.21274 * 120.00539 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99713 * 179.97438 * 14 13 12 17 17 N 1.46497 * 109.47299 * 180.02562 * 16 14 13 18 18 C 1.34523 * 119.91428 * 90.00127 * 17 16 14 19 19 O 1.21873 * 118.56973 * 0.02562 * 18 17 16 20 20 N 1.33384 * 122.86328 * 179.97438 * 18 17 16 21 21 C 1.32158 * 121.82368 * 0.02562 * 20 18 17 22 22 O 1.34943 * 120.74537 * 179.97438 * 21 20 18 23 23 C 1.46789 * 118.50453 * 359.97438 * 21 20 18 24 24 C 1.39548 * 121.93176 * 180.02562 * 23 21 20 25 25 C 1.36731 * 119.57842 * 180.02562 * 24 23 21 26 26 C 1.38799 * 120.65720 * 359.95489 * 25 24 23 27 27 C 1.37940 * 120.69325 * 0.02578 * 26 25 24 28 28 C 1.38123 * 119.92268 * 269.98199 * 17 16 14 29 29 H 1.09001 * 109.47346 * 300.00338 * 1 2 3 30 30 H 1.08999 * 109.47067 * 60.00578 * 1 2 3 31 31 H 1.09007 * 109.47297 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46918 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46887 * 299.98882 * 3 2 1 34 34 H 1.08997 * 109.47541 * 59.99174 * 3 2 1 35 35 H 0.97002 * 120.00347 * 179.97438 * 7 6 4 36 36 H 1.09005 * 109.46938 * 179.97438 * 12 2 1 37 37 H 1.09002 * 109.47405 * 60.00511 * 12 2 1 38 38 H 0.97001 * 120.00070 * 0.02562 * 13 12 2 39 39 H 1.09005 * 109.47048 * 60.00497 * 16 14 13 40 40 H 1.09002 * 109.47485 * 300.00980 * 16 14 13 41 41 H 0.96695 * 113.99812 * 359.97438 * 22 21 20 42 42 H 1.07999 * 120.20865 * 0.02562 * 24 23 21 43 43 H 1.08001 * 119.67009 * 179.97438 * 25 24 23 44 44 H 1.07994 * 119.65414 * 180.02562 * 26 25 24 45 45 H 1.08002 * 120.21940 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6993 -0.2396 -2.4826 7 7 0.9436 0.8300 -2.6035 8 14 2.3214 -1.1206 -4.0078 9 1 1.8260 -2.5206 -4.0075 10 1 1.8271 -0.4204 -5.2204 11 1 3.8065 -1.1212 -4.0079 12 6 2.0399 -0.7211 1.2494 13 7 1.5515 -0.0304 2.4454 14 6 1.8767 -0.4911 3.6696 15 8 2.5739 -1.4772 3.7810 16 6 1.3748 0.2197 4.9000 17 7 1.8630 -0.4708 6.0962 18 6 3.0388 -0.1143 6.6438 19 8 3.6749 0.7858 6.1236 20 7 3.5385 -0.7022 7.7318 21 6 2.9030 -1.6839 8.3475 22 8 3.4289 -2.2637 9.4467 23 6 1.6122 -2.1292 7.8088 24 6 0.8804 -3.1587 8.4021 25 6 -0.3168 -3.5353 7.8595 26 6 -0.8103 -2.9035 6.7265 27 6 -0.1031 -1.8834 6.1247 28 6 1.1146 -1.4860 6.6593 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6765 1.9564 0.8899 35 1 0.7096 1.1615 -3.4845 36 1 3.1299 -0.7216 1.2491 37 1 1.6766 -1.7488 1.2494 38 1 0.9936 0.7581 2.3564 39 1 0.2848 0.2206 4.8999 40 1 1.7388 1.2472 4.8999 41 1 4.2815 -1.8953 9.7159 42 1 1.2573 -3.6547 9.2843 43 1 -0.8842 -4.3321 8.3173 44 1 -1.7579 -3.2137 6.3117 45 1 -0.4941 -1.3974 5.2431 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412426808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:59 Heat of formation + Delta-G solvation = -47.659090 kcal Electronic energy + Delta-G solvation = -30254.731113 eV Core-core repulsion = 26045.296064 eV Total energy + Delta-G solvation = -4209.435049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.05411 -39.60394 -38.87427 -38.76615 -36.49750 -35.77524 -34.83024 -33.37607 -31.50893 -31.07968 -30.38270 -28.47391 -25.75990 -25.60378 -25.15133 -24.70574 -23.74293 -22.54464 -20.47649 -20.13476 -19.43589 -18.86868 -17.98443 -17.53886 -16.84350 -16.14587 -16.03602 -15.72975 -15.40293 -15.06689 -14.90646 -14.73757 -14.71318 -14.51499 -14.26186 -14.04079 -13.52759 -13.24598 -13.11612 -12.91842 -12.56821 -12.23172 -12.14772 -11.76694 -11.40038 -11.24895 -11.17081 -10.96842 -10.86814 -10.75224 -10.58898 -10.41859 -10.23099 -10.09064 -9.71899 -9.67079 -9.38456 -9.32028 -8.83370 -8.52794 -8.41238 -8.36599 -6.04380 -4.14625 0.01124 0.80152 1.34884 2.17380 2.54342 2.84064 2.94991 3.28939 3.33242 3.36384 3.48219 3.81679 3.83503 4.08709 4.36342 4.38390 4.50101 4.63629 4.78452 4.85156 4.92664 4.99583 5.13642 5.22439 5.31423 5.44868 5.70316 5.86376 5.97599 6.16104 6.22887 6.27925 6.35049 6.46525 6.64782 6.71304 6.78483 6.88193 6.94206 6.98557 7.31631 7.52522 7.59446 7.66754 7.90310 7.98130 7.99256 8.10839 8.35005 8.54185 8.85611 9.51347 10.97008 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018553 B = 0.002512 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.825323 B =11143.047511 C =11739.433596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.057 3.943 3 C -0.132 4.132 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.133 3.867 13 N -0.710 5.710 14 C 0.492 3.508 15 O -0.538 6.538 16 C 0.080 3.920 17 N -0.526 5.526 18 C 0.676 3.324 19 O -0.518 6.518 20 N -0.606 5.606 21 C 0.478 3.522 22 O -0.440 6.440 23 C -0.182 4.182 24 C -0.021 4.021 25 C -0.164 4.164 26 C -0.035 4.035 27 C -0.168 4.168 28 C 0.233 3.767 29 H 0.006 0.994 30 H 0.086 0.914 31 H 0.026 0.974 32 H 0.027 0.973 33 H 0.086 0.914 34 H 0.007 0.993 35 H 0.261 0.739 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.399 0.601 39 H 0.118 0.882 40 H 0.130 0.870 41 H 0.422 0.578 42 H 0.144 0.856 43 H 0.135 0.865 44 H 0.139 0.861 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.752 -5.325 24.031 25.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.056 3.944 3 C -0.190 4.190 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.011 3.989 13 N -0.362 5.362 14 C 0.275 3.725 15 O -0.416 6.416 16 C -0.047 4.047 17 N -0.247 5.247 18 C 0.378 3.622 19 O -0.391 6.391 20 N -0.359 5.359 21 C 0.268 3.732 22 O -0.234 6.234 23 C -0.188 4.188 24 C -0.041 4.041 25 C -0.183 4.183 26 C -0.055 4.055 27 C -0.189 4.189 28 C 0.127 3.873 29 H 0.025 0.975 30 H 0.105 0.895 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.105 0.895 34 H 0.026 0.974 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.235 0.765 39 H 0.136 0.864 40 H 0.148 0.852 41 H 0.280 0.720 42 H 0.161 0.839 43 H 0.153 0.847 44 H 0.156 0.844 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.564 -5.211 23.740 24.934 hybrid contribution 0.028 -0.117 -1.124 1.130 sum -5.536 -5.328 22.616 23.885 Atomic orbital electron populations 1.21834 0.97725 0.99137 1.00122 1.18351 0.92797 0.92799 0.90424 1.21844 0.98744 0.98258 1.00132 1.20940 1.31624 1.12172 0.89899 0.92508 1.24868 0.94811 0.94904 0.98832 1.69785 1.36606 1.22674 1.23380 0.86629 0.79303 0.79765 0.82148 1.20275 1.21290 1.20259 1.21762 0.98334 0.95695 0.83128 1.46230 1.52494 1.31756 1.05672 1.20562 0.81650 0.85298 0.84994 1.90709 1.37767 1.26457 1.86618 1.21719 1.01339 0.98904 0.82693 1.45675 1.20449 1.32224 1.26343 1.16964 0.79173 0.83975 0.82094 1.90979 1.56845 1.30286 1.60994 1.69364 1.35605 1.16551 1.14400 1.21678 0.86177 0.83161 0.82183 1.84860 1.41468 1.58328 1.38786 1.18457 0.95744 1.04726 0.99854 1.20870 0.93046 0.92251 0.97904 1.20891 0.97111 1.02399 0.97861 1.21337 0.98760 0.92079 0.93287 1.20772 0.93952 1.01410 1.02729 1.17934 0.91556 0.87234 0.90528 0.97518 0.89521 0.95439 0.95365 0.89521 0.97446 0.92908 0.92631 0.92626 0.76537 0.86395 0.85246 0.71958 0.83861 0.84687 0.84362 0.84103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.08 37.15 0.30 -2.53 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 4 C -0.51 -13.28 8.01 -34.44 -0.28 -13.55 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.89 -23.43 9.35 55.43 0.52 -22.91 16 8 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 13 N -0.71 -12.31 4.96 -60.29 -0.30 -12.61 16 14 C 0.49 8.54 7.90 -10.98 -0.09 8.46 16 15 O -0.54 -11.65 16.43 5.56 0.09 -11.56 16 16 C 0.08 1.05 5.36 -5.19 -0.03 1.02 16 17 N -0.53 -7.63 2.13 -120.49 -0.26 -7.89 16 18 C 0.68 11.73 8.31 -88.38 -0.73 10.99 16 19 O -0.52 -10.73 16.61 5.03 0.08 -10.65 16 20 N -0.61 -9.01 10.33 -15.14 -0.16 -9.17 16 21 C 0.48 5.26 8.12 -13.96 -0.11 5.15 16 22 O -0.44 -3.00 13.03 -16.55 -0.22 -3.21 16 23 C -0.18 -1.93 5.88 -104.98 -0.62 -2.55 16 24 C -0.02 -0.15 9.65 -39.64 -0.38 -0.54 16 25 C -0.16 -1.03 9.97 -39.92 -0.40 -1.43 16 26 C -0.03 -0.24 10.02 -39.48 -0.40 -0.64 16 27 C -0.17 -1.59 9.25 -39.48 -0.37 -1.96 16 28 C 0.23 2.80 6.52 -83.85 -0.55 2.26 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 30 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 34 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 35 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.40 6.01 6.16 -40.82 -0.25 5.76 16 39 H 0.12 1.03 6.31 -51.93 -0.33 0.70 16 40 H 0.13 1.64 7.35 -51.93 -0.38 1.26 16 41 H 0.42 1.33 8.99 45.56 0.41 1.74 16 42 H 0.14 0.74 7.78 -52.49 -0.41 0.33 16 43 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 44 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 45 H 0.14 1.18 6.33 -52.49 -0.33 0.85 16 LS Contribution 372.52 15.07 5.61 5.61 Total: -1.00 -35.88 372.52 -7.89 -43.76 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -4.71 Total: 5.23 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -3.53 Total: 7.69 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.19 Total: -52.59 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.04 Total: -25.42 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.88 -7.89 -43.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412426808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.896 kcal (2) G-P(sol) polarization free energy of solvation -35.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds