Wall clock time and date at job start Wed Apr 1 2020 03:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47073 * 2 1 4 4 C 1.50699 * 109.47575 * 239.99235 * 2 1 3 5 5 H 1.07993 * 120.00369 * 240.00703 * 4 2 1 6 6 C 1.37876 * 119.99365 * 59.99982 * 4 2 1 7 7 N 1.31514 * 120.00615 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99924 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47374 * 59.99695 * 8 6 4 10 10 H 1.48498 * 109.47532 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46779 * 300.00111 * 8 6 4 12 12 C 1.53001 * 109.46770 * 119.99412 * 2 1 3 13 13 N 1.46498 * 109.47287 * 299.99863 * 12 2 1 14 14 C 1.34779 * 119.99728 * 179.97438 * 13 12 2 15 15 O 1.21274 * 120.00539 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99713 * 179.97438 * 14 13 12 17 17 N 1.46497 * 109.47299 * 180.02562 * 16 14 13 18 18 C 1.34523 * 119.91428 * 90.00127 * 17 16 14 19 19 O 1.21873 * 118.56973 * 0.02562 * 18 17 16 20 20 N 1.33384 * 122.86328 * 179.97438 * 18 17 16 21 21 C 1.32158 * 121.82368 * 0.02562 * 20 18 17 22 22 O 1.34943 * 120.74537 * 179.97438 * 21 20 18 23 23 C 1.46789 * 118.50453 * 359.97438 * 21 20 18 24 24 C 1.39548 * 121.93176 * 180.02562 * 23 21 20 25 25 C 1.36731 * 119.57842 * 180.02562 * 24 23 21 26 26 C 1.38799 * 120.65720 * 359.95489 * 25 24 23 27 27 C 1.37940 * 120.69325 * 0.02578 * 26 25 24 28 28 C 1.38123 * 119.92268 * 269.98199 * 17 16 14 29 29 H 1.09001 * 109.47346 * 300.00338 * 1 2 3 30 30 H 1.08999 * 109.47067 * 60.00578 * 1 2 3 31 31 H 1.09007 * 109.47297 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46918 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46887 * 299.98882 * 3 2 1 34 34 H 1.08997 * 109.47541 * 59.99174 * 3 2 1 35 35 H 0.97002 * 120.00347 * 179.97438 * 7 6 4 36 36 H 1.09005 * 109.46938 * 179.97438 * 12 2 1 37 37 H 1.09002 * 109.47405 * 60.00511 * 12 2 1 38 38 H 0.97001 * 120.00070 * 0.02562 * 13 12 2 39 39 H 1.09005 * 109.47048 * 60.00497 * 16 14 13 40 40 H 1.09002 * 109.47485 * 300.00980 * 16 14 13 41 41 H 0.96695 * 113.99812 * 359.97438 * 22 21 20 42 42 H 1.07999 * 120.20865 * 0.02562 * 24 23 21 43 43 H 1.08001 * 119.67009 * 179.97438 * 25 24 23 44 44 H 1.07994 * 119.65414 * 180.02562 * 26 25 24 45 45 H 1.08002 * 120.21940 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6993 -0.2396 -2.4826 7 7 0.9436 0.8300 -2.6035 8 14 2.3214 -1.1206 -4.0078 9 1 1.8260 -2.5206 -4.0075 10 1 1.8271 -0.4204 -5.2204 11 1 3.8065 -1.1212 -4.0079 12 6 2.0399 -0.7211 1.2494 13 7 1.5515 -0.0304 2.4454 14 6 1.8767 -0.4911 3.6696 15 8 2.5739 -1.4772 3.7810 16 6 1.3748 0.2197 4.9000 17 7 1.8630 -0.4708 6.0962 18 6 3.0388 -0.1143 6.6438 19 8 3.6749 0.7858 6.1236 20 7 3.5385 -0.7022 7.7318 21 6 2.9030 -1.6839 8.3475 22 8 3.4289 -2.2637 9.4467 23 6 1.6122 -2.1292 7.8088 24 6 0.8804 -3.1587 8.4021 25 6 -0.3168 -3.5353 7.8595 26 6 -0.8103 -2.9035 6.7265 27 6 -0.1031 -1.8834 6.1247 28 6 1.1146 -1.4860 6.6593 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6765 1.9564 0.8899 35 1 0.7096 1.1615 -3.4845 36 1 3.1299 -0.7216 1.2491 37 1 1.6766 -1.7488 1.2494 38 1 0.9936 0.7581 2.3564 39 1 0.2848 0.2206 4.8999 40 1 1.7388 1.2472 4.8999 41 1 4.2815 -1.8953 9.7159 42 1 1.2573 -3.6547 9.2843 43 1 -0.8842 -4.3321 8.3173 44 1 -1.7579 -3.2137 6.3117 45 1 -0.4941 -1.3974 5.2431 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412426808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:58 Heat of formation + Delta-G solvation = -76.631942 kcal Electronic energy + Delta-G solvation = -30255.987471 eV Core-core repulsion = 26045.296064 eV Total energy + Delta-G solvation = -4210.691406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.99391 -40.84553 -39.92337 -39.53579 -38.18992 -36.82466 -35.77246 -35.08834 -32.86766 -32.19035 -31.23146 -29.61465 -27.56791 -27.42720 -26.55179 -25.79285 -24.65040 -23.38036 -21.77777 -21.04117 -20.66324 -20.23086 -18.90333 -18.75724 -17.82112 -17.78690 -17.13076 -17.00962 -16.58416 -16.52925 -16.21223 -15.70423 -15.63812 -15.42829 -15.20218 -14.98755 -14.89634 -14.69452 -14.60102 -14.17832 -14.00787 -13.40021 -13.17714 -13.10382 -13.08231 -12.68392 -12.64775 -12.34258 -12.26206 -12.17951 -12.13800 -12.08258 -11.50039 -11.47393 -11.33350 -11.10124 -10.94750 -10.71759 -10.41261 -10.10796 -10.05105 -9.27290 -8.03837 -6.19682 -0.75153 0.07532 0.57559 1.20016 1.42437 1.44105 1.47955 1.50493 1.81535 2.08165 2.26112 2.46625 2.84649 2.98164 3.19704 3.36573 3.63316 3.69447 3.81255 3.92725 4.03849 4.18818 4.27310 4.39171 4.41916 4.46912 4.69239 4.73314 4.77152 4.95320 5.04831 5.04891 5.09436 5.18548 5.21169 5.30956 5.38396 5.42025 5.53004 5.65542 5.67047 5.76824 6.01940 6.14235 6.20753 6.42062 6.49716 6.59554 6.83815 6.91405 7.16225 7.47997 8.94796 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018553 B = 0.002512 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.825323 B =11143.047511 C =11739.433596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.053 3.947 3 C -0.124 4.124 4 C -0.533 4.533 5 H 0.042 0.958 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.943 3.057 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.150 3.850 13 N -0.701 5.701 14 C 0.493 3.507 15 O -0.584 6.584 16 C 0.087 3.913 17 N -0.530 5.530 18 C 0.667 3.333 19 O -0.578 6.578 20 N -0.645 5.645 21 C 0.490 3.510 22 O -0.420 6.420 23 C -0.201 4.201 24 C -0.017 4.017 25 C -0.151 4.151 26 C -0.025 4.025 27 C -0.180 4.180 28 C 0.198 3.802 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.022 0.978 32 H 0.011 0.989 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.261 0.739 36 H 0.028 0.972 37 H 0.044 0.956 38 H 0.413 0.587 39 H 0.167 0.833 40 H 0.133 0.867 41 H 0.439 0.561 42 H 0.169 0.831 43 H 0.173 0.827 44 H 0.171 0.829 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.438 -6.910 26.039 28.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.053 3.947 3 C -0.182 4.182 4 C -0.571 4.571 5 H 0.060 0.940 6 C -0.169 4.169 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.207 1.207 12 C 0.027 3.973 13 N -0.353 5.353 14 C 0.279 3.721 15 O -0.465 6.465 16 C -0.039 4.039 17 N -0.251 5.251 18 C 0.369 3.631 19 O -0.456 6.456 20 N -0.401 5.401 21 C 0.283 3.717 22 O -0.216 6.216 23 C -0.207 4.207 24 C -0.037 4.037 25 C -0.170 4.170 26 C -0.045 4.045 27 C -0.201 4.201 28 C 0.095 3.905 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.031 0.969 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.062 0.938 38 H 0.251 0.749 39 H 0.184 0.816 40 H 0.150 0.850 41 H 0.300 0.700 42 H 0.187 0.813 43 H 0.190 0.810 44 H 0.189 0.811 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.304 -6.834 25.809 27.960 hybrid contribution 0.784 0.185 -1.593 1.785 sum -7.521 -6.649 24.216 26.214 Atomic orbital electron populations 1.21660 0.96398 0.98986 1.00717 1.18341 0.93768 0.92676 0.89940 1.21711 0.97657 0.98178 1.00612 1.21243 1.31911 1.12261 0.91729 0.94001 1.25417 0.95091 0.95578 1.00847 1.69886 1.36841 1.23111 1.23729 0.85851 0.78463 0.78991 0.79706 1.20020 1.20619 1.20674 1.21278 0.96558 0.95339 0.84165 1.45999 1.52577 1.31935 1.04803 1.21295 0.80415 0.84597 0.85838 1.90683 1.39721 1.28745 1.87305 1.21809 1.03868 0.98009 0.80257 1.45558 1.20106 1.33057 1.26338 1.17246 0.79607 0.83675 0.82532 1.90907 1.58748 1.33006 1.62973 1.69237 1.36997 1.18837 1.15048 1.21885 0.86117 0.81648 0.82019 1.84861 1.42467 1.57393 1.36874 1.18755 0.95953 1.05881 1.00113 1.21242 0.93112 0.90946 0.98351 1.21390 0.96403 1.02201 0.96958 1.21811 0.99385 0.90413 0.92843 1.21036 0.93344 1.02410 1.03291 1.18378 0.92693 0.87666 0.91776 0.93846 0.91886 0.95902 0.96948 0.91634 0.94239 0.92931 0.95400 0.93759 0.74889 0.81554 0.84959 0.69969 0.81337 0.80981 0.81119 0.83349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.08 8.08 71.98 0.58 -4.50 16 2 C 0.05 2.46 0.50 -52.93 -0.03 2.43 16 3 C -0.12 -5.59 8.08 71.98 0.58 -5.01 16 4 C -0.53 -28.41 8.01 25.60 0.21 -28.20 16 5 H 0.04 2.29 7.74 -2.91 -0.02 2.27 16 6 C 0.03 1.62 5.15 84.65 0.44 2.06 16 7 N -0.90 -47.63 9.35 21.45 0.20 -47.43 16 8 Si 0.94 42.79 29.54 68.60 2.03 44.82 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 C 0.15 6.48 4.50 86.38 0.39 6.87 16 13 N -0.70 -23.90 4.96 -463.05 -2.30 -26.20 16 14 C 0.49 17.13 7.90 87.66 0.69 17.83 16 15 O -0.58 -26.00 16.43 -3.01 -0.05 -26.05 16 16 C 0.09 2.22 5.36 85.63 0.46 2.68 16 17 N -0.53 -15.48 2.13 -653.41 -1.39 -16.87 16 18 C 0.67 24.22 8.31 179.57 1.49 25.71 16 19 O -0.58 -25.52 16.61 -4.90 -0.08 -25.60 16 20 N -0.64 -19.88 10.33 -434.04 -4.48 -24.36 16 21 C 0.49 10.49 8.12 86.88 0.71 11.19 16 22 O -0.42 -4.97 13.03 -82.13 -1.07 -6.04 16 23 C -0.20 -3.96 5.88 -20.10 -0.12 -4.07 16 24 C -0.02 -0.19 9.65 22.23 0.21 0.03 16 25 C -0.15 -1.16 9.97 22.05 0.22 -0.94 16 26 C -0.03 -0.24 10.02 22.33 0.22 -0.02 16 27 C -0.18 -2.93 9.25 22.33 0.21 -2.73 16 28 C 0.20 4.54 6.52 38.91 0.25 4.79 16 29 H 0.04 1.48 6.86 -2.39 -0.02 1.46 16 30 H 0.06 3.01 6.07 -2.39 -0.01 2.99 16 31 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 34 H 0.04 1.48 6.86 -2.39 -0.02 1.46 16 35 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 36 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.41 11.64 6.16 -92.71 -0.57 11.07 16 39 H 0.17 2.48 6.31 -2.38 -0.02 2.46 16 40 H 0.13 3.35 7.35 -2.39 -0.02 3.33 16 41 H 0.44 2.14 8.99 -74.06 -0.67 1.47 16 42 H 0.17 0.98 7.78 -2.91 -0.02 0.96 16 43 H 0.17 0.12 8.06 -2.91 -0.02 0.09 16 44 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 45 H 0.15 2.06 6.33 -2.91 -0.02 2.04 16 Total: -1.00 -83.48 372.52 -0.80 -84.28 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -0.17 Total: 15.34 kcal Atomic # 6 Polarization: 21.59 SS G_CDS: 6.51 Total: 28.11 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -7.97 Total: -114.86 kcal Atomic # 8 Polarization: -56.49 SS G_CDS: -1.20 Total: -57.69 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -83.48 -0.80 -84.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412426808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.646 kcal (2) G-P(sol) polarization free energy of solvation -83.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds