Wall clock time and date at job start Wed Apr 1 2020 02:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 113.99947 * 2 1 4 4 H 1.09000 * 109.47435 * 29.41917 * 3 2 1 5 5 C 1.52999 * 109.47144 * 269.42159 * 3 2 1 6 6 C 1.53003 * 109.47328 * 174.21190 * 5 3 2 7 7 C 1.53000 * 109.47280 * 175.02270 * 6 5 3 8 8 C 1.53008 * 109.46617 * 295.01452 * 6 5 3 9 9 C 1.52996 * 109.47138 * 149.41779 * 3 2 1 10 10 S 1.81391 * 109.47252 * 300.00004 * 9 3 2 11 11 O 1.42101 * 110.54470 * 68.37564 * 10 9 3 12 12 O 1.42101 * 110.54558 * 291.62304 * 10 9 3 13 13 N 1.65602 * 104.45212 * 180.02562 * 10 9 3 14 14 C 1.39985 * 120.00108 * 64.99424 * 13 10 9 15 15 C 1.40435 * 125.97562 * 180.02562 * 14 13 10 16 16 C 1.35251 * 107.86173 * 179.97438 * 15 14 13 17 17 N 1.34962 * 107.86232 * 0.26557 * 16 15 14 18 18 C 1.46499 * 125.96961 * 179.70122 * 17 16 15 19 19 C 1.50703 * 109.46895 * 124.99945 * 18 17 16 20 20 H 1.07997 * 120.00350 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99950 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99827 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00042 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47445 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47139 * 120.00169 * 23 21 19 26 26 H 1.48506 * 109.46947 * 239.99992 * 23 21 19 27 27 N 1.31223 * 125.97560 * 359.96850 * 14 13 10 28 28 H 1.08995 * 109.47318 * 184.68490 * 1 2 3 29 29 H 1.08998 * 109.46709 * 304.68775 * 1 2 3 30 30 H 1.09002 * 109.46848 * 64.68207 * 1 2 3 31 31 H 1.09007 * 109.46729 * 294.20702 * 5 3 2 32 32 H 1.09001 * 109.47572 * 54.20438 * 5 3 2 33 33 H 1.08997 * 109.47744 * 55.01473 * 6 5 3 34 34 H 1.08997 * 109.47383 * 59.98981 * 7 6 5 35 35 H 1.08998 * 109.47163 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46915 * 299.99646 * 7 6 5 37 37 H 1.08995 * 109.47468 * 306.84080 * 8 6 5 38 38 H 1.09001 * 109.46603 * 66.84323 * 8 6 5 39 39 H 1.09001 * 109.47041 * 186.83580 * 8 6 5 40 40 H 1.09007 * 109.47256 * 179.97438 * 9 3 2 41 41 H 1.09007 * 109.47142 * 60.00403 * 9 3 2 42 42 H 0.97008 * 119.99926 * 245.00320 * 13 10 9 43 43 H 1.08000 * 126.06890 * 359.95535 * 15 14 13 44 44 H 1.07997 * 126.06647 * 180.02562 * 16 15 14 45 45 H 1.09001 * 109.47149 * 244.99441 * 18 17 16 46 46 H 1.08998 * 109.47456 * 5.00046 * 18 17 16 47 47 H 0.97004 * 119.99835 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3403 2.0015 0.5048 5 6 2.2310 1.7654 -1.4424 6 6 2.7176 3.2160 -1.4464 7 6 3.0567 3.6363 -2.8779 8 6 1.6168 4.1246 -0.8954 9 6 3.3522 1.2662 0.7339 10 16 3.0904 0.7210 2.4440 11 8 2.6948 -0.6435 2.4773 12 8 2.3798 1.7079 3.1789 13 7 4.6043 0.7243 3.1152 14 6 5.3009 1.9292 3.2649 15 6 6.5848 2.0771 3.8144 16 6 6.9016 3.3916 3.7808 17 7 5.8592 4.0548 3.2375 18 6 5.7790 5.5013 3.0196 19 6 5.4727 5.7746 1.5696 20 1 5.3495 4.9530 0.8795 21 6 5.3485 7.0735 1.1242 22 7 5.4979 8.0740 1.9647 23 14 4.9680 7.4123 -0.6730 24 1 4.8475 6.1256 -1.4046 25 1 3.6897 8.1611 -0.7757 26 1 6.0637 8.2195 -1.2673 27 7 4.8688 3.1180 2.9155 28 1 -0.3634 -1.0242 0.0839 29 1 -0.3633 0.5848 0.8450 30 1 -0.3633 0.4395 -0.9290 31 1 2.9794 1.1299 -1.9159 32 1 1.2934 1.6952 -1.9938 33 1 3.6068 3.3028 -0.8219 34 1 2.1675 3.5495 -3.5024 35 1 3.4029 4.6698 -2.8808 36 1 3.8409 2.9890 -3.2705 37 1 0.6916 3.9485 -1.4441 38 1 1.4600 3.9059 0.1609 39 1 1.9145 5.1669 -1.0102 40 1 3.7957 2.2620 0.7335 41 1 4.0222 0.5703 0.2291 42 1 5.0085 -0.1088 3.4044 43 1 7.2084 1.2823 4.1963 44 1 7.8233 3.8326 4.1305 45 1 4.9887 5.9194 3.6430 46 1 6.7313 5.9617 3.2828 47 1 5.4109 8.9879 1.6512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421162677.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:06 Heat of formation + Delta-G solvation = -53.039057 kcal Electronic energy + Delta-G solvation = -30223.414079 eV Core-core repulsion = 26149.189688 eV Total energy + Delta-G solvation = -4074.224391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.55115 -38.97489 -36.87598 -36.04991 -35.76023 -35.18893 -33.32332 -31.83267 -30.80257 -29.49348 -27.19125 -27.05859 -26.71213 -26.62405 -23.24129 -22.29735 -20.90074 -20.64250 -19.73026 -18.79120 -17.35096 -17.17696 -16.91883 -16.67273 -16.54324 -15.50291 -15.35466 -14.96530 -14.83065 -14.65054 -14.47953 -14.13559 -13.73850 -13.40693 -13.11586 -13.02923 -12.86124 -12.59505 -12.49084 -12.27902 -12.03020 -12.01688 -11.87090 -11.82629 -11.71743 -11.57819 -11.28899 -11.27393 -11.02632 -10.88061 -10.86169 -10.61882 -10.51283 -10.40529 -10.32397 -10.02281 -9.66638 -9.57122 -8.70575 -8.39541 -7.68566 -6.30966 -4.35967 0.36792 2.56443 2.62387 3.15664 3.24061 3.27407 3.29039 3.45969 3.52522 3.87938 4.23948 4.42208 4.47928 4.70462 4.90974 4.97859 5.03098 5.06639 5.11009 5.18655 5.22895 5.29340 5.40801 5.43933 5.56470 5.64326 5.73367 5.77865 5.88162 5.90315 6.01356 6.02819 6.08747 6.12684 6.25396 6.32633 6.48467 6.50576 6.61465 6.93648 6.94508 7.07805 7.30106 7.61484 7.78748 7.89184 8.40040 8.71023 9.29608 10.78073 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008818 B = 0.005567 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.488196 B = 5028.061399 C = 7557.329714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.383 6.383 3 C 0.098 3.902 4 H 0.082 0.918 5 C -0.121 4.121 6 C -0.103 4.103 7 C -0.145 4.145 8 C -0.154 4.154 9 C -0.625 4.625 10 S 2.611 3.389 11 O -0.948 6.948 12 O -0.932 6.932 13 N -1.019 6.019 14 C 0.275 3.725 15 C -0.306 4.306 16 C 0.070 3.930 17 N -0.312 5.312 18 C 0.255 3.745 19 C -0.527 4.527 20 H 0.070 0.930 21 C 0.065 3.935 22 N -0.893 5.893 23 Si 0.898 3.102 24 H -0.265 1.265 25 H -0.280 1.280 26 H -0.283 1.283 27 N -0.309 5.309 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.161 0.839 41 H 0.139 0.861 42 H 0.429 0.571 43 H 0.140 0.860 44 H 0.172 0.828 45 H 0.049 0.951 46 H 0.059 0.941 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.211 -12.754 -4.285 13.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.303 6.303 3 C 0.039 3.961 4 H 0.099 0.901 5 C -0.160 4.160 6 C -0.122 4.122 7 C -0.203 4.203 8 C -0.211 4.211 9 C -0.754 4.754 10 S 2.703 3.297 11 O -0.938 6.938 12 O -0.921 6.921 13 N -0.771 5.771 14 C 0.019 3.981 15 C -0.340 4.340 16 C -0.082 4.082 17 N -0.093 5.093 18 C 0.138 3.862 19 C -0.565 4.565 20 H 0.088 0.912 21 C -0.138 4.138 22 N -0.531 5.531 23 Si 0.725 3.275 24 H -0.189 1.189 25 H -0.206 1.206 26 H -0.209 1.209 27 N -0.140 5.140 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.179 0.821 41 H 0.157 0.843 42 H 0.265 0.735 43 H 0.158 0.842 44 H 0.189 0.811 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.988 -12.007 -4.411 13.730 hybrid contribution 1.117 -0.019 -0.900 1.435 sum -3.871 -12.026 -5.312 13.705 Atomic orbital electron populations 1.22917 0.80470 1.03353 1.00437 1.88000 1.20279 1.26860 1.95113 1.21828 0.91620 0.85310 0.97351 0.90066 1.22027 1.02241 0.96716 0.94989 1.21190 0.99817 0.93496 0.97650 1.21822 1.00946 1.01703 0.95788 1.21935 0.97745 1.00205 1.01236 1.30692 1.05714 1.15310 1.23690 1.05114 0.72804 0.74503 0.77229 1.93601 1.79526 1.33710 1.86973 1.93647 1.69282 1.61854 1.67347 1.52785 1.37557 1.11248 1.75536 1.18763 0.92495 0.85937 1.00918 1.20866 0.97610 0.96698 1.18824 1.22453 0.94478 0.92233 0.99031 1.49089 1.09239 1.08463 1.42467 1.19842 0.99626 0.67686 0.99057 1.21222 1.49752 0.92734 0.92832 0.91202 1.24908 0.94752 0.95683 0.98496 1.69919 1.49033 0.99320 1.34822 0.86416 0.78159 0.78747 0.84139 1.18946 1.20625 1.20862 1.77384 1.14209 0.95100 1.27327 0.88992 0.93580 0.93544 0.90786 0.91171 0.89894 0.92980 0.92326 0.92815 0.93048 0.92003 0.92039 0.82078 0.84296 0.73526 0.84179 0.81112 0.93356 0.92341 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.88 101.05 1.10 1.36 16 2 O -0.38 -5.30 9.38 -41.98 -0.39 -5.69 16 3 C 0.10 1.36 2.11 -26.73 -0.06 1.30 16 4 H 0.08 1.12 6.03 -51.93 -0.31 0.81 16 5 C -0.12 -1.49 4.48 -26.73 -0.12 -1.61 16 6 C -0.10 -1.45 2.80 -90.61 -0.25 -1.70 16 7 C -0.15 -1.87 9.19 37.16 0.34 -1.53 16 8 C -0.15 -2.21 8.78 37.16 0.33 -1.88 16 9 C -0.62 -9.13 5.50 37.16 0.20 -8.92 16 10 S 2.61 43.08 5.01 -107.50 -0.54 42.54 16 11 O -0.95 -16.40 17.41 -61.89 -1.08 -17.48 16 12 O -0.93 -18.93 17.29 -57.54 -1.00 -19.93 16 13 N -1.02 -15.48 5.81 31.39 0.18 -15.29 16 14 C 0.27 5.00 7.59 -154.55 -1.17 3.82 16 15 C -0.31 -4.94 10.83 -39.82 -0.43 -5.37 16 16 C 0.07 1.19 11.44 -17.24 -0.20 1.00 16 17 N -0.31 -6.64 3.67 -62.56 -0.23 -6.87 16 18 C 0.26 6.07 6.26 -5.19 -0.03 6.04 16 19 C -0.53 -13.64 9.23 -34.44 -0.32 -13.95 16 20 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -24.30 13.29 55.43 0.74 -23.56 16 23 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 N -0.31 -6.63 10.72 31.41 0.34 -6.30 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.48 7.98 -51.93 -0.41 0.06 16 30 H 0.05 0.41 7.90 -51.93 -0.41 0.00 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.76 7.90 -51.93 -0.41 0.35 16 33 H 0.08 1.33 6.38 -51.93 -0.33 1.00 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.92 6.78 -51.93 -0.35 0.57 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.16 2.59 5.75 -51.92 -0.30 2.29 16 41 H 0.14 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.43 4.97 8.92 -34.47 -0.31 4.66 16 43 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.17 2.27 8.06 -52.49 -0.42 1.85 16 45 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.06 1.35 8.07 -51.93 -0.42 0.93 16 47 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 399.20 15.07 6.02 6.02 Total: -1.00 -32.99 399.20 -9.14 -42.13 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -7.45 Total: 9.14 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -0.71 Total: -19.85 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 1.03 Total: -52.02 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -2.47 Total: -43.10 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 43.08 SS G_CDS: -0.54 Total: 42.54 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.99 -9.14 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421162677.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.904 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds