Wall clock time and date at job start Wed Apr 1 2020 02:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 113.99947 * 2 1 4 4 H 1.09000 * 109.47435 * 29.41917 * 3 2 1 5 5 C 1.52999 * 109.47144 * 269.42159 * 3 2 1 6 6 C 1.53003 * 109.47328 * 174.21190 * 5 3 2 7 7 C 1.53000 * 109.47280 * 175.02270 * 6 5 3 8 8 C 1.53008 * 109.46617 * 295.01452 * 6 5 3 9 9 C 1.52996 * 109.47138 * 149.41779 * 3 2 1 10 10 S 1.81391 * 109.47252 * 300.00004 * 9 3 2 11 11 O 1.42101 * 110.54470 * 68.37564 * 10 9 3 12 12 O 1.42101 * 110.54558 * 291.62304 * 10 9 3 13 13 N 1.65602 * 104.45212 * 180.02562 * 10 9 3 14 14 C 1.39985 * 120.00108 * 64.99424 * 13 10 9 15 15 C 1.40435 * 125.97562 * 180.02562 * 14 13 10 16 16 C 1.35251 * 107.86173 * 179.97438 * 15 14 13 17 17 N 1.34962 * 107.86232 * 0.26557 * 16 15 14 18 18 C 1.46499 * 125.96961 * 179.70122 * 17 16 15 19 19 C 1.50703 * 109.46895 * 124.99945 * 18 17 16 20 20 H 1.07997 * 120.00350 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99950 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99827 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00042 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47445 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47139 * 120.00169 * 23 21 19 26 26 H 1.48506 * 109.46947 * 239.99992 * 23 21 19 27 27 N 1.31223 * 125.97560 * 359.96850 * 14 13 10 28 28 H 1.08995 * 109.47318 * 184.68490 * 1 2 3 29 29 H 1.08998 * 109.46709 * 304.68775 * 1 2 3 30 30 H 1.09002 * 109.46848 * 64.68207 * 1 2 3 31 31 H 1.09007 * 109.46729 * 294.20702 * 5 3 2 32 32 H 1.09001 * 109.47572 * 54.20438 * 5 3 2 33 33 H 1.08997 * 109.47744 * 55.01473 * 6 5 3 34 34 H 1.08997 * 109.47383 * 59.98981 * 7 6 5 35 35 H 1.08998 * 109.47163 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46915 * 299.99646 * 7 6 5 37 37 H 1.08995 * 109.47468 * 306.84080 * 8 6 5 38 38 H 1.09001 * 109.46603 * 66.84323 * 8 6 5 39 39 H 1.09001 * 109.47041 * 186.83580 * 8 6 5 40 40 H 1.09007 * 109.47256 * 179.97438 * 9 3 2 41 41 H 1.09007 * 109.47142 * 60.00403 * 9 3 2 42 42 H 0.97008 * 119.99926 * 245.00320 * 13 10 9 43 43 H 1.08000 * 126.06890 * 359.95535 * 15 14 13 44 44 H 1.07997 * 126.06647 * 180.02562 * 16 15 14 45 45 H 1.09001 * 109.47149 * 244.99441 * 18 17 16 46 46 H 1.08998 * 109.47456 * 5.00046 * 18 17 16 47 47 H 0.97004 * 119.99835 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3403 2.0015 0.5048 5 6 2.2310 1.7654 -1.4424 6 6 2.7176 3.2160 -1.4464 7 6 3.0567 3.6363 -2.8779 8 6 1.6168 4.1246 -0.8954 9 6 3.3522 1.2662 0.7339 10 16 3.0904 0.7210 2.4440 11 8 2.6948 -0.6435 2.4773 12 8 2.3798 1.7079 3.1789 13 7 4.6043 0.7243 3.1152 14 6 5.3009 1.9292 3.2649 15 6 6.5848 2.0771 3.8144 16 6 6.9016 3.3916 3.7808 17 7 5.8592 4.0548 3.2375 18 6 5.7790 5.5013 3.0196 19 6 5.4727 5.7746 1.5696 20 1 5.3495 4.9530 0.8795 21 6 5.3485 7.0735 1.1242 22 7 5.4979 8.0740 1.9647 23 14 4.9680 7.4123 -0.6730 24 1 4.8475 6.1256 -1.4046 25 1 3.6897 8.1611 -0.7757 26 1 6.0637 8.2195 -1.2673 27 7 4.8688 3.1180 2.9155 28 1 -0.3634 -1.0242 0.0839 29 1 -0.3633 0.5848 0.8450 30 1 -0.3633 0.4395 -0.9290 31 1 2.9794 1.1299 -1.9159 32 1 1.2934 1.6952 -1.9938 33 1 3.6068 3.3028 -0.8219 34 1 2.1675 3.5495 -3.5024 35 1 3.4029 4.6698 -2.8808 36 1 3.8409 2.9890 -3.2705 37 1 0.6916 3.9485 -1.4441 38 1 1.4600 3.9059 0.1609 39 1 1.9145 5.1669 -1.0102 40 1 3.7957 2.2620 0.7335 41 1 4.0222 0.5703 0.2291 42 1 5.0085 -0.1088 3.4044 43 1 7.2084 1.2823 4.1963 44 1 7.8233 3.8326 4.1305 45 1 4.9887 5.9194 3.6430 46 1 6.7313 5.9617 3.2828 47 1 5.4109 8.9879 1.6512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421162677.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:05 Heat of formation + Delta-G solvation = -75.509486 kcal Electronic energy + Delta-G solvation = -30224.388470 eV Core-core repulsion = 26149.189688 eV Total energy + Delta-G solvation = -4075.198782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.99948 -40.00304 -38.27652 -37.18580 -37.08593 -36.63875 -35.19041 -32.92508 -32.49706 -30.92500 -28.48747 -28.25315 -28.14268 -27.51157 -25.02691 -23.40159 -22.30876 -22.08588 -20.82901 -20.13149 -18.69658 -18.66105 -18.46770 -17.99035 -17.81415 -17.05607 -16.42206 -16.40194 -16.10845 -16.02630 -15.69236 -15.65050 -14.81437 -14.54370 -14.43374 -14.39495 -14.24354 -14.17829 -13.74945 -13.53384 -13.30948 -13.30252 -13.20339 -13.16915 -13.07379 -12.95820 -12.72220 -12.55203 -12.50117 -12.31277 -12.23522 -12.02752 -11.84380 -11.58162 -11.56283 -11.50819 -11.33249 -10.70526 -10.64827 -9.85605 -9.17452 -8.30427 -6.42239 -0.93463 1.17006 1.23160 1.35682 1.39073 1.50724 1.94590 2.02853 2.36128 2.45718 2.59193 3.02957 3.15325 3.35663 3.61467 3.67046 3.85957 3.94426 4.02639 4.07229 4.18929 4.31119 4.40767 4.48251 4.57612 4.60563 4.68431 4.73343 4.81387 4.83504 4.84362 4.90245 4.94142 4.94685 4.99818 5.02735 5.07832 5.28423 5.36842 5.40685 5.60252 5.68348 5.89214 5.96877 5.99284 6.30727 6.68998 6.96070 7.27173 8.77820 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008818 B = 0.005567 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.488196 B = 5028.061399 C = 7557.329714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.397 6.397 3 C 0.094 3.906 4 H 0.074 0.926 5 C -0.111 4.111 6 C -0.106 4.106 7 C -0.143 4.143 8 C -0.156 4.156 9 C -0.614 4.614 10 S 2.616 3.384 11 O -0.957 6.957 12 O -0.978 6.978 13 N -1.006 6.006 14 C 0.274 3.726 15 C -0.294 4.294 16 C 0.069 3.931 17 N -0.341 5.341 18 C 0.269 3.731 19 C -0.535 4.535 20 H 0.060 0.940 21 C 0.021 3.979 22 N -0.923 5.923 23 Si 0.952 3.048 24 H -0.257 1.257 25 H -0.280 1.280 26 H -0.275 1.275 27 N -0.356 5.356 28 H 0.108 0.892 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.146 0.854 41 H 0.166 0.834 42 H 0.445 0.555 43 H 0.183 0.817 44 H 0.208 0.792 45 H 0.016 0.984 46 H 0.064 0.936 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.663 -14.655 -5.885 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.317 6.317 3 C 0.034 3.966 4 H 0.092 0.908 5 C -0.150 4.150 6 C -0.124 4.124 7 C -0.200 4.200 8 C -0.214 4.214 9 C -0.746 4.746 10 S 2.712 3.288 11 O -0.947 6.947 12 O -0.967 6.967 13 N -0.762 5.762 14 C 0.017 3.983 15 C -0.327 4.327 16 C -0.080 4.080 17 N -0.122 5.122 18 C 0.150 3.850 19 C -0.574 4.574 20 H 0.078 0.922 21 C -0.179 4.179 22 N -0.562 5.562 23 Si 0.777 3.223 24 H -0.180 1.180 25 H -0.206 1.206 26 H -0.200 1.200 27 N -0.187 5.187 28 H 0.126 0.874 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.164 0.836 41 H 0.183 0.817 42 H 0.285 0.715 43 H 0.200 0.800 44 H 0.225 0.775 45 H 0.034 0.966 46 H 0.081 0.919 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.427 -13.966 -5.970 15.820 hybrid contribution 0.935 0.458 -0.355 1.100 sum -3.491 -13.508 -6.325 15.318 Atomic orbital electron populations 1.23210 0.78988 1.04711 1.01573 1.87968 1.21975 1.26449 1.95266 1.21880 0.90930 0.85574 0.98175 0.90815 1.21962 1.03640 0.95302 0.94082 1.21182 0.98528 0.94766 0.97967 1.21806 1.02309 1.00730 0.95202 1.21962 0.99319 0.99251 1.00821 1.30583 1.07153 1.14953 1.21892 1.04757 0.72657 0.73611 0.77800 1.93580 1.79883 1.33834 1.87442 1.93594 1.70834 1.62994 1.69324 1.52568 1.36906 1.11180 1.75530 1.19085 0.93363 0.85825 1.00012 1.21350 0.96798 0.97304 1.17225 1.23211 0.94617 0.92571 0.97577 1.48795 1.10829 1.07632 1.44993 1.19380 0.98494 0.69779 0.97333 1.21414 1.49483 0.92610 0.93862 0.92171 1.25639 0.94557 0.95513 1.02215 1.70004 1.50009 0.99663 1.36502 0.85575 0.77986 0.78893 0.79872 1.18044 1.20574 1.20042 1.77307 1.15537 0.96463 1.29433 0.87363 0.93938 0.91254 0.89657 0.88924 0.92710 0.90750 0.94127 0.91754 0.90277 0.93589 0.93868 0.83566 0.81653 0.71508 0.79957 0.77503 0.96648 0.91854 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 10.88 113.37 1.23 1.45 16 2 O -0.40 -10.29 9.38 -142.52 -1.34 -11.62 16 3 C 0.09 2.50 2.11 30.59 0.06 2.57 16 4 H 0.07 2.06 6.03 -2.39 -0.01 2.04 16 5 C -0.11 -2.50 4.48 30.59 0.14 -2.37 16 6 C -0.11 -2.88 2.80 -10.79 -0.03 -2.91 16 7 C -0.14 -3.42 9.19 71.98 0.66 -2.76 16 8 C -0.16 -4.47 8.78 71.98 0.63 -3.84 16 9 C -0.61 -17.67 5.50 71.98 0.40 -17.27 16 10 S 2.62 86.10 5.01 -56.49 -0.28 85.82 16 11 O -0.96 -32.37 17.41 -123.49 -2.15 -34.52 16 12 O -0.98 -41.07 17.29 -127.65 -2.21 -43.28 16 13 N -1.01 -29.51 5.81 -54.60 -0.32 -29.83 16 14 C 0.27 9.73 7.59 133.39 1.01 10.74 16 15 C -0.29 -8.73 10.83 22.12 0.24 -8.49 16 16 C 0.07 2.27 11.44 83.52 0.96 3.22 16 17 N -0.34 -14.70 3.67 -351.84 -1.29 -15.99 16 18 C 0.27 13.26 6.26 85.63 0.54 13.80 16 19 C -0.54 -28.53 9.23 25.60 0.24 -28.30 16 20 H 0.06 3.26 7.81 -2.91 -0.02 3.23 16 21 C 0.02 1.11 5.46 84.65 0.46 1.58 16 22 N -0.92 -51.31 13.29 21.45 0.28 -51.03 16 23 Si 0.95 41.86 29.54 68.60 2.03 43.89 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 27 N -0.36 -15.57 10.72 -54.54 -0.58 -16.16 16 28 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.04 0.85 7.98 -2.39 -0.02 0.83 16 30 H 0.07 1.03 7.90 -2.39 -0.02 1.01 16 31 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.09 1.69 7.90 -2.39 -0.02 1.67 16 33 H 0.05 1.79 6.38 -2.39 -0.02 1.78 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 1.43 6.78 -2.39 -0.02 1.41 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.15 4.83 5.75 -2.39 -0.01 4.81 16 41 H 0.17 3.74 8.14 -2.39 -0.02 3.72 16 42 H 0.45 9.45 8.92 -96.73 -0.86 8.58 16 43 H 0.18 3.76 8.06 -2.91 -0.02 3.73 16 44 H 0.21 4.95 8.06 -2.91 -0.02 4.92 16 45 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.06 3.01 8.07 -2.39 -0.02 2.99 16 47 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -73.36 399.20 0.78 -72.58 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.11 Total: 32.72 kcal Atomic # 6 Polarization: -39.11 SS G_CDS: 6.54 Total: -32.58 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -1.91 Total: -113.01 kcal Atomic # 8 Polarization: -83.73 SS G_CDS: -5.70 Total: -89.42 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 16 Polarization: 86.10 SS G_CDS: -0.28 Total: 85.82 kcal Total: -73.36 0.78 -72.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421162677.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.930 kcal (2) G-P(sol) polarization free energy of solvation -73.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds