Wall clock time and date at job start Wed Apr 1 2020 02:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 114.00296 * 2 1 4 4 H 1.08997 * 109.47216 * 348.67040 * 3 2 1 5 5 C 1.53001 * 109.47034 * 108.67411 * 3 2 1 6 6 C 1.53003 * 109.46851 * 296.45434 * 5 3 2 7 7 C 1.52995 * 109.47003 * 175.81627 * 6 5 3 8 8 C 1.52994 * 109.47302 * 295.81963 * 6 5 3 9 9 C 1.53010 * 109.46979 * 228.67024 * 3 2 1 10 10 S 1.81397 * 109.46970 * 64.69917 * 9 3 2 11 11 O 1.42093 * 110.54663 * 61.51161 * 10 9 3 12 12 O 1.42098 * 110.53964 * 284.75595 * 10 9 3 13 13 N 1.65601 * 104.44801 * 173.13663 * 10 9 3 14 14 C 1.39987 * 120.00002 * 64.99430 * 13 10 9 15 15 C 1.40429 * 125.97573 * 179.97438 * 14 13 10 16 16 C 1.35248 * 107.86498 * 179.97438 * 15 14 13 17 17 N 1.34965 * 107.86356 * 0.26840 * 16 15 14 18 18 C 1.46494 * 125.97466 * 179.70314 * 17 16 15 19 19 C 1.50700 * 109.47389 * 124.99651 * 18 17 16 20 20 H 1.08005 * 119.99573 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00278 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99844 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00246 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47583 * 89.99492 * 23 21 19 25 25 H 1.48494 * 109.47207 * 209.99792 * 23 21 19 26 26 H 1.48500 * 109.46836 * 329.99470 * 23 21 19 27 27 N 1.31223 * 125.97673 * 359.96599 * 14 13 10 28 28 H 1.08995 * 109.47601 * 184.19870 * 1 2 3 29 29 H 1.08999 * 109.47120 * 304.20257 * 1 2 3 30 30 H 1.09000 * 109.47042 * 64.20110 * 1 2 3 31 31 H 1.08999 * 109.47370 * 56.45335 * 5 3 2 32 32 H 1.09001 * 109.47084 * 176.45898 * 5 3 2 33 33 H 1.09000 * 109.46969 * 55.82102 * 6 5 3 34 34 H 1.09006 * 109.47532 * 184.49542 * 7 6 5 35 35 H 1.09003 * 109.47538 * 304.49131 * 7 6 5 36 36 H 1.08998 * 109.47122 * 64.49412 * 7 6 5 37 37 H 1.09004 * 109.47341 * 59.99632 * 8 6 5 38 38 H 1.08994 * 109.47497 * 179.97438 * 8 6 5 39 39 H 1.09000 * 109.47222 * 299.99984 * 8 6 5 40 40 H 1.08999 * 109.46931 * 304.69164 * 9 3 2 41 41 H 1.09002 * 109.46842 * 184.69752 * 9 3 2 42 42 H 0.96995 * 119.99885 * 244.99859 * 13 10 9 43 43 H 1.07997 * 126.06905 * 359.94878 * 15 14 13 44 44 H 1.07995 * 126.07444 * 180.02562 * 16 15 14 45 45 H 1.09000 * 109.46945 * 244.99421 * 18 17 16 46 46 H 1.08997 * 109.47557 * 4.99438 * 18 17 16 47 47 H 0.97006 * 120.00057 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2376 2.0472 -0.2019 5 6 2.6396 1.5834 1.3666 6 6 1.5479 1.5924 2.4385 7 6 2.1882 1.7663 3.8171 8 6 0.5833 2.7502 2.1744 9 6 3.0880 1.3838 -1.0833 10 16 2.3199 1.1921 -2.7154 11 8 1.3896 2.2391 -2.9548 12 8 1.9698 -0.1658 -2.9452 13 7 3.5482 1.4841 -3.7870 14 6 4.6470 0.6187 -3.8450 15 6 5.7525 0.7455 -4.7016 16 6 6.5924 -0.2844 -4.4502 17 7 6.0411 -1.0402 -3.4773 18 6 6.6163 -2.2600 -2.9052 19 6 6.7188 -2.1132 -1.4089 20 1 6.3889 -1.2021 -0.9319 21 6 7.2347 -3.1415 -0.6490 22 7 7.6368 -4.2507 -1.2300 23 14 7.3611 -2.9598 1.2058 24 1 6.1107 -3.4519 1.8378 25 1 8.5130 -3.7538 1.7035 26 1 7.5603 -1.5292 1.5505 27 7 4.8241 -0.4528 -3.1085 28 1 -0.3634 -1.0248 0.0752 29 1 -0.3633 0.5777 0.8499 30 1 -0.3633 0.4473 -0.9252 31 1 3.3679 0.8056 1.5962 32 1 3.1374 2.5529 1.3469 33 1 1.0012 0.6499 2.4081 34 1 1.4197 1.6928 4.5866 35 1 2.9336 0.9864 3.9726 36 1 2.6675 2.7436 3.8744 37 1 0.1271 2.6263 1.1921 38 1 -0.1947 2.7563 2.9377 39 1 1.1300 3.6927 2.2047 40 1 3.8168 0.5881 -0.9289 41 1 3.5885 2.3505 -1.0285 42 1 3.5063 2.2548 -4.3744 43 1 5.9050 1.5265 -5.4317 44 1 7.5347 -0.4714 -4.9435 45 1 5.9767 -3.1098 -3.1439 46 1 7.6095 -2.4241 -3.3231 47 1 7.9995 -4.9744 -0.6954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421162678.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:08 Heat of formation + Delta-G solvation = -75.833040 kcal Electronic energy + Delta-G solvation = -29660.983910 eV Core-core repulsion = 25585.771098 eV Total energy + Delta-G solvation = -4075.212812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.00674 -40.12307 -38.32917 -37.20489 -36.71370 -36.58935 -35.20789 -33.35572 -32.51365 -30.93404 -28.50476 -28.23530 -28.21221 -27.37406 -25.04532 -23.27541 -22.23982 -22.09239 -21.03136 -20.12344 -18.76079 -18.67549 -18.42621 -18.12067 -17.60875 -17.11350 -16.78446 -16.39729 -16.12531 -15.89490 -15.70148 -15.48582 -14.77602 -14.55514 -14.43410 -14.32334 -14.25470 -14.15700 -13.77864 -13.68222 -13.35759 -13.27888 -13.15456 -13.11694 -12.97701 -12.88155 -12.81201 -12.75411 -12.49185 -12.32518 -12.24127 -12.11204 -11.71030 -11.61342 -11.53474 -11.41216 -11.32353 -10.71449 -10.67226 -9.86638 -9.18856 -8.31701 -6.43996 -0.97160 1.16632 1.21547 1.36205 1.39907 1.48462 1.94232 2.02144 2.35584 2.47151 2.61131 3.01250 3.16469 3.31386 3.60708 3.63794 3.81198 3.97277 4.05142 4.07874 4.13652 4.27699 4.36003 4.41787 4.58848 4.66380 4.68777 4.71438 4.79070 4.82849 4.83279 4.94252 4.97951 4.99321 5.03631 5.06699 5.07283 5.27871 5.40818 5.47213 5.58244 5.67463 5.88099 5.97953 6.05083 6.30081 6.66933 6.96298 7.25371 8.76484 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008167 B = 0.004812 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3427.625436 B = 5817.358704 C = 8370.753232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.402 6.402 3 C 0.092 3.908 4 H 0.100 0.900 5 C -0.121 4.121 6 C -0.102 4.102 7 C -0.144 4.144 8 C -0.155 4.155 9 C -0.623 4.623 10 S 2.611 3.389 11 O -0.968 6.968 12 O -0.966 6.966 13 N -1.005 6.005 14 C 0.273 3.727 15 C -0.293 4.293 16 C 0.069 3.931 17 N -0.343 5.343 18 C 0.271 3.729 19 C -0.542 4.542 20 H 0.056 0.944 21 C 0.020 3.980 22 N -0.921 5.921 23 Si 0.963 3.037 24 H -0.280 1.280 25 H -0.272 1.272 26 H -0.266 1.266 27 N -0.356 5.356 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.133 0.867 41 H 0.178 0.822 42 H 0.446 0.554 43 H 0.185 0.815 44 H 0.209 0.791 45 H 0.014 0.986 46 H 0.066 0.934 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.224 17.475 2.453 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.322 6.322 3 C 0.033 3.967 4 H 0.117 0.883 5 C -0.160 4.160 6 C -0.121 4.121 7 C -0.202 4.202 8 C -0.212 4.212 9 C -0.755 4.755 10 S 2.707 3.293 11 O -0.959 6.959 12 O -0.956 6.956 13 N -0.761 5.761 14 C 0.017 3.983 15 C -0.326 4.326 16 C -0.080 4.080 17 N -0.125 5.125 18 C 0.152 3.848 19 C -0.581 4.581 20 H 0.074 0.926 21 C -0.181 4.181 22 N -0.560 5.560 23 Si 0.787 3.213 24 H -0.206 1.206 25 H -0.196 1.196 26 H -0.190 1.190 27 N -0.187 5.187 28 H 0.117 0.883 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.151 0.849 41 H 0.195 0.805 42 H 0.285 0.715 43 H 0.203 0.797 44 H 0.226 0.774 45 H 0.032 0.968 46 H 0.084 0.916 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.391 15.930 3.286 19.301 hybrid contribution 0.899 0.431 0.128 1.005 sum -9.491 16.361 3.414 19.220 Atomic orbital electron populations 1.23294 0.79611 1.04810 1.01232 1.88110 1.21448 1.27611 1.95022 1.22059 0.93691 0.86042 0.94922 0.88251 1.22047 0.98712 1.03184 0.92078 1.21167 0.96244 0.99856 0.94825 1.21805 1.00708 1.01958 0.95704 1.22006 0.99295 0.98026 1.01836 1.30760 1.12182 1.14131 1.18420 1.04877 0.73587 0.73593 0.77209 1.93572 1.59205 1.58133 1.84972 1.93604 1.81321 1.36901 1.83772 1.52511 1.33378 1.36100 1.54077 1.19081 0.90003 0.91481 0.97785 1.21356 0.95306 1.06233 1.09707 1.23239 1.00890 0.91833 0.92074 1.48815 1.13455 1.21817 1.28368 1.19349 0.93182 0.78133 0.94146 1.21404 1.42472 1.02311 0.91877 0.92557 1.25675 0.94394 0.94394 1.03621 1.69990 1.42240 1.05945 1.37810 0.85479 0.77903 0.78643 0.79264 1.20551 1.19640 1.19018 1.77385 1.04133 1.10712 1.26493 0.88310 0.90429 0.94169 0.92401 0.88428 0.91496 0.91621 0.93716 0.91695 0.92767 0.91281 0.91317 0.84862 0.80468 0.71463 0.79741 0.77408 0.96783 0.91649 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 10.30 113.37 1.17 1.32 16 2 O -0.40 -12.87 9.49 -148.98 -1.41 -14.29 16 3 C 0.09 2.43 2.08 30.60 0.06 2.49 16 4 H 0.10 2.13 5.87 -2.39 -0.01 2.11 16 5 C -0.12 -2.77 4.41 30.60 0.13 -2.63 16 6 C -0.10 -1.94 2.45 -10.80 -0.03 -1.96 16 7 C -0.14 -2.46 9.19 71.98 0.66 -1.80 16 8 C -0.15 -2.24 8.56 71.98 0.62 -1.63 16 9 C -0.62 -17.80 5.67 71.99 0.41 -17.39 16 10 S 2.61 84.93 5.00 -56.49 -0.28 84.65 16 11 O -0.97 -30.44 18.08 -127.65 -2.31 -32.75 16 12 O -0.97 -41.69 17.14 -127.58 -2.19 -43.87 16 13 N -1.01 -29.20 5.81 -54.61 -0.32 -29.51 16 14 C 0.27 9.88 7.59 133.39 1.01 10.89 16 15 C -0.29 -8.81 10.83 22.11 0.24 -8.57 16 16 C 0.07 2.29 11.44 83.52 0.96 3.25 16 17 N -0.34 -15.31 3.67 -351.86 -1.29 -16.60 16 18 C 0.27 13.82 6.26 85.63 0.54 14.36 16 19 C -0.54 -30.22 9.23 25.60 0.24 -29.98 16 20 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 21 C 0.02 1.08 5.46 84.65 0.46 1.54 16 22 N -0.92 -52.42 13.29 21.45 0.28 -52.13 16 23 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 N -0.36 -16.20 10.87 -54.55 -0.59 -16.79 16 28 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.08 1.40 5.61 -2.39 -0.01 1.39 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.41 6.53 -2.39 -0.02 1.39 16 34 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.79 5.64 -2.38 -0.01 0.77 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.13 4.76 7.58 -2.39 -0.02 4.74 16 41 H 0.18 3.48 8.14 -2.39 -0.02 3.47 16 42 H 0.45 9.07 8.92 -96.75 -0.86 8.21 16 43 H 0.19 3.78 8.06 -2.91 -0.02 3.75 16 44 H 0.21 5.08 8.06 -2.91 -0.02 5.05 16 45 H 0.01 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.07 3.18 8.07 -2.39 -0.02 3.16 16 47 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 Total: -1.00 -77.56 397.67 0.50 -77.07 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.11 Total: 28.55 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 6.47 Total: -30.11 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -1.92 Total: -115.04 kcal Atomic # 8 Polarization: -85.00 SS G_CDS: -5.91 Total: -90.91 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 84.93 SS G_CDS: -0.28 Total: 84.65 kcal Total: -77.56 0.50 -77.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421162678.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.232 kcal (2) G-P(sol) polarization free energy of solvation -77.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds