Wall clock time and date at job start Wed Apr 1 2020 02:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47093 * 2 1 4 4 C 1.52996 * 109.46970 * 240.00020 * 2 1 3 5 5 C 1.50699 * 109.47299 * 119.99818 * 2 1 3 6 6 N 1.29909 * 124.84931 * 60.00227 * 5 2 1 7 7 C 1.36087 * 108.80569 * 180.02562 * 6 5 2 8 8 C 1.39520 * 133.73109 * 180.02562 * 7 6 5 9 9 C 1.38354 * 119.66633 * 179.97438 * 8 7 6 10 10 N 1.39868 * 119.87135 * 180.02562 * 9 8 7 11 11 C 1.34776 * 120.00090 * 144.86661 * 10 9 8 12 12 O 1.21375 * 119.99990 * 4.58987 * 11 10 9 13 13 C 1.49346 * 119.99697 * 184.59138 * 11 10 9 14 14 O 1.21363 * 120.00148 * 359.97438 * 13 11 10 15 15 N 1.34776 * 119.99697 * 180.02562 * 13 11 10 16 16 C 1.46495 * 120.00147 * 179.97438 * 15 13 11 17 17 C 1.50696 * 109.47535 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99989 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00381 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00459 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99792 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.46776 * 89.99609 * 21 19 17 23 23 H 1.48498 * 109.47045 * 209.99768 * 21 19 17 24 24 H 1.48497 * 109.46994 * 330.00243 * 21 19 17 25 25 C 1.39358 * 120.25546 * 0.02562 * 9 8 7 26 26 C 1.37792 * 120.40913 * 359.95789 * 25 9 8 27 27 C 1.38722 * 119.97127 * 0.04339 * 26 25 9 28 28 O 1.34215 * 124.85012 * 240.02842 * 5 2 1 29 29 H 1.08999 * 109.47157 * 299.99572 * 1 2 3 30 30 H 1.08993 * 109.47453 * 59.99838 * 1 2 3 31 31 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47344 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46979 * 300.00373 * 3 2 1 34 34 H 1.08999 * 109.47228 * 59.99918 * 3 2 1 35 35 H 1.09000 * 109.47197 * 299.99810 * 4 2 1 36 36 H 1.08998 * 109.47586 * 59.99688 * 4 2 1 37 37 H 1.09002 * 109.47280 * 179.97438 * 4 2 1 38 38 H 1.08001 * 120.16628 * 359.95395 * 8 7 6 39 39 H 0.97001 * 119.99846 * 324.85359 * 10 9 8 40 40 H 0.97008 * 120.00051 * 359.97438 * 15 13 11 41 41 H 1.08999 * 109.47356 * 300.00185 * 16 15 13 42 42 H 1.09003 * 109.47401 * 59.99264 * 16 15 13 43 43 H 0.97000 * 120.00615 * 180.02562 * 20 19 17 44 44 H 1.08002 * 119.79416 * 179.97438 * 25 9 8 45 45 H 1.07995 * 120.01306 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 7 1.7773 -1.9487 1.5288 7 6 2.3901 -2.2516 2.7056 8 6 2.4611 -3.4052 3.4870 9 6 3.1870 -3.3910 4.6647 10 7 3.2615 -4.5452 5.4512 11 6 4.3944 -4.8309 6.1230 12 8 5.3202 -4.0461 6.1131 13 6 4.5105 -6.1133 6.8797 14 8 3.5846 -6.8978 6.8900 15 7 5.6432 -6.3988 7.5520 16 6 5.7570 -7.6564 8.2947 17 6 7.1113 -7.7314 8.9513 18 1 7.8166 -6.9228 8.8281 19 6 7.4496 -8.8316 9.7102 20 7 8.6313 -8.8968 10.2837 21 14 6.2294 -10.2298 9.9240 22 1 6.4245 -11.2269 8.8409 23 1 6.4476 -10.8803 11.2409 24 1 4.8460 -9.6936 9.8598 25 6 3.8443 -2.2310 5.0704 26 6 3.7791 -1.0880 4.3037 27 6 3.0549 -1.0875 3.1205 28 8 2.8068 -0.1538 2.1749 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 1.9516 -4.3047 3.1744 39 1 2.4977 -5.1399 5.5132 40 1 6.3831 -5.7716 7.5440 41 1 4.9799 -7.6993 9.0578 42 1 5.6391 -8.4954 7.6088 43 1 8.8695 -9.6710 10.8173 44 1 4.4086 -2.2281 5.9913 45 1 4.2913 -0.1927 4.6239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427870333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:40 Heat of formation + Delta-G solvation = -35.406153 kcal Electronic energy + Delta-G solvation = -28589.803828 eV Core-core repulsion = 24380.900106 eV Total energy + Delta-G solvation = -4208.903722 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.55034 -40.89547 -38.94504 -37.89512 -37.21313 -35.29730 -34.70960 -34.14360 -32.44533 -30.52464 -29.37102 -28.37807 -27.84041 -27.83182 -25.24866 -24.28840 -22.98099 -22.37085 -21.62774 -20.40872 -19.96918 -18.97908 -18.40187 -17.50563 -17.03133 -16.86300 -16.52940 -15.97735 -15.81349 -15.21982 -15.04259 -14.74228 -14.57181 -14.40199 -14.29329 -14.18471 -13.85181 -13.42879 -13.26762 -12.91500 -12.81541 -12.78619 -12.48650 -12.30259 -12.21469 -12.12063 -12.04479 -11.84801 -11.50954 -11.43515 -11.39682 -11.11333 -10.86567 -10.77111 -10.45960 -10.06558 -9.60162 -9.39390 -8.89726 -8.73086 -8.48068 -8.40906 -6.28154 -4.32417 0.40007 0.76791 1.62374 2.12035 2.14563 2.39422 3.20824 3.26653 3.28223 3.33778 3.35014 3.49866 3.85393 4.15833 4.25587 4.25897 4.29163 4.39233 4.69186 4.76285 4.80788 4.97175 5.00853 5.06005 5.06565 5.08847 5.23083 5.25472 5.29914 5.31867 5.41112 5.54641 5.70507 5.72774 5.73617 5.84691 5.86419 5.96143 6.01244 6.43310 6.54812 6.78559 6.87316 6.95824 7.20617 7.33124 7.58962 7.93256 8.29890 8.40300 8.71474 9.28991 10.83484 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.034020 B = 0.001725 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.845206 B =16230.935844 C =16614.960380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.026 3.974 3 C -0.148 4.148 4 C -0.141 4.141 5 C 0.258 3.742 6 N -0.475 5.475 7 C 0.041 3.959 8 C -0.090 4.090 9 C 0.153 3.847 10 N -0.649 5.649 11 C 0.512 3.488 12 O -0.500 6.500 13 C 0.495 3.505 14 O -0.536 6.536 15 N -0.662 5.662 16 C 0.217 3.783 17 C -0.550 4.550 18 H 0.083 0.917 19 C 0.080 3.920 20 N -0.887 5.887 21 Si 0.877 3.123 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.261 1.261 25 C -0.090 4.090 26 C -0.073 4.073 27 C -0.006 4.006 28 O -0.210 6.210 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.142 0.858 39 H 0.426 0.574 40 H 0.411 0.589 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.269 0.731 44 H 0.160 0.840 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.055 20.556 -20.682 33.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.025 3.975 3 C -0.206 4.206 4 C -0.198 4.198 5 C 0.046 3.954 6 N -0.204 5.204 7 C -0.071 4.071 8 C -0.111 4.111 9 C 0.057 3.943 10 N -0.296 5.296 11 C 0.295 3.705 12 O -0.373 6.373 13 C 0.273 3.727 14 O -0.415 6.415 15 N -0.312 5.312 16 C 0.096 3.904 17 C -0.588 4.588 18 H 0.101 0.899 19 C -0.124 4.124 20 N -0.524 5.524 21 Si 0.703 3.297 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.185 1.185 25 C -0.110 4.110 26 C -0.092 4.092 27 C -0.057 4.057 28 O -0.101 6.101 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.160 0.840 39 H 0.264 0.736 40 H 0.247 0.753 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.079 0.921 44 H 0.177 0.823 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.196 19.932 -20.813 33.057 hybrid contribution -0.025 -0.407 0.663 0.778 sum -16.221 19.525 -20.150 32.409 Atomic orbital electron populations 1.21919 0.91252 1.03725 1.02862 1.19288 0.96762 0.94770 0.86675 1.21935 1.02116 0.93311 1.03213 1.21924 1.01689 1.01350 0.94857 1.26381 0.89504 0.88113 0.91408 1.70548 1.23735 1.12816 1.13293 1.19413 0.99426 0.94812 0.93475 1.19866 1.02564 0.97109 0.91606 1.17397 0.99308 0.86610 0.90953 1.43156 1.16790 1.23737 1.45945 1.20799 0.82035 0.88009 0.79623 1.90745 1.38058 1.48909 1.59538 1.19636 0.84833 0.86284 0.81944 1.90740 1.38541 1.49425 1.62801 1.46125 1.15043 1.23237 1.46750 1.19735 0.98749 0.80574 0.91335 1.21041 0.98384 1.07100 1.32227 0.89883 1.24778 0.95286 0.97958 0.94417 1.69869 1.20032 1.30305 1.32186 0.86826 0.82246 0.82513 0.78143 1.19734 1.20740 1.18487 1.21242 0.99350 0.89451 1.00980 1.19759 0.99213 0.99688 0.90574 1.20354 1.03491 0.88321 0.93494 1.84491 1.57518 1.39190 1.28904 0.92076 0.90669 0.90934 0.91607 0.90744 0.91637 0.90920 0.90664 0.92028 0.84013 0.73570 0.75324 0.94807 0.95288 0.92088 0.82262 0.84109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 8.45 37.16 0.31 -0.44 16 2 C 0.03 0.17 0.99 -155.66 -0.15 0.02 16 3 C -0.15 -0.74 7.98 37.16 0.30 -0.45 16 4 C -0.14 -0.79 8.45 37.16 0.31 -0.48 16 5 C 0.26 2.66 6.40 -13.09 -0.08 2.58 16 6 N -0.47 -5.79 11.32 -8.71 -0.10 -5.89 16 7 C 0.04 0.52 7.23 -84.71 -0.61 -0.10 16 8 C -0.09 -1.05 10.01 -39.06 -0.39 -1.44 16 9 C 0.15 1.86 6.29 -83.73 -0.53 1.33 16 10 N -0.65 -8.10 5.32 -10.30 -0.05 -8.16 16 11 C 0.51 7.86 7.73 -11.63 -0.09 7.77 16 12 O -0.50 -8.23 13.89 5.47 0.08 -8.15 16 13 C 0.49 9.00 7.89 -11.63 -0.09 8.91 16 14 O -0.54 -10.68 16.48 5.49 0.09 -10.59 16 15 N -0.66 -13.25 5.54 -61.95 -0.34 -13.60 16 16 C 0.22 5.10 4.50 -5.20 -0.02 5.08 16 17 C -0.55 -14.72 9.83 -34.44 -0.34 -15.06 16 18 H 0.08 2.34 7.84 -52.49 -0.41 1.93 16 19 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 20 N -0.89 -25.85 13.96 55.43 0.77 -25.07 16 21 Si 0.88 20.62 27.47 -169.99 -4.67 15.95 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 25 C -0.09 -1.08 8.67 -39.33 -0.34 -1.42 16 26 C -0.07 -0.79 10.05 -39.57 -0.40 -1.19 16 27 C -0.01 -0.08 7.43 -38.62 -0.29 -0.36 16 28 O -0.21 -2.38 10.12 3.45 0.03 -2.35 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 39 H 0.43 4.60 8.30 -40.82 -0.34 4.27 16 40 H 0.41 7.79 7.79 -40.82 -0.32 7.47 16 41 H 0.03 0.82 7.20 -51.93 -0.37 0.44 16 42 H 0.03 0.70 7.57 -51.93 -0.39 0.30 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.16 1.95 6.20 -52.49 -0.33 1.62 16 45 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 384.82 15.07 5.80 5.80 Total: -1.00 -31.90 384.82 -6.88 -38.78 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.98 Total: 6.41 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -2.51 Total: 6.87 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.28 Total: -52.72 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.20 Total: -21.09 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.90 -6.88 -38.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427870333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.378 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds