Wall clock time and date at job start Wed Apr 1 2020 02:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47093 * 2 1 4 4 C 1.52996 * 109.46970 * 240.00020 * 2 1 3 5 5 C 1.50699 * 109.47299 * 119.99818 * 2 1 3 6 6 N 1.29909 * 124.84931 * 60.00227 * 5 2 1 7 7 C 1.36087 * 108.80569 * 180.02562 * 6 5 2 8 8 C 1.39520 * 133.73109 * 180.02562 * 7 6 5 9 9 C 1.38354 * 119.66633 * 179.97438 * 8 7 6 10 10 N 1.39868 * 119.87135 * 180.02562 * 9 8 7 11 11 C 1.34776 * 120.00090 * 144.86661 * 10 9 8 12 12 O 1.21375 * 119.99990 * 4.58987 * 11 10 9 13 13 C 1.49346 * 119.99697 * 184.59138 * 11 10 9 14 14 O 1.21363 * 120.00148 * 359.97438 * 13 11 10 15 15 N 1.34776 * 119.99697 * 180.02562 * 13 11 10 16 16 C 1.46495 * 120.00147 * 179.97438 * 15 13 11 17 17 C 1.50696 * 109.47535 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99989 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00381 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00459 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99792 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.46776 * 89.99609 * 21 19 17 23 23 H 1.48498 * 109.47045 * 209.99768 * 21 19 17 24 24 H 1.48497 * 109.46994 * 330.00243 * 21 19 17 25 25 C 1.39358 * 120.25546 * 0.02562 * 9 8 7 26 26 C 1.37792 * 120.40913 * 359.95789 * 25 9 8 27 27 C 1.38722 * 119.97127 * 0.04339 * 26 25 9 28 28 O 1.34215 * 124.85012 * 240.02842 * 5 2 1 29 29 H 1.08999 * 109.47157 * 299.99572 * 1 2 3 30 30 H 1.08993 * 109.47453 * 59.99838 * 1 2 3 31 31 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47344 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46979 * 300.00373 * 3 2 1 34 34 H 1.08999 * 109.47228 * 59.99918 * 3 2 1 35 35 H 1.09000 * 109.47197 * 299.99810 * 4 2 1 36 36 H 1.08998 * 109.47586 * 59.99688 * 4 2 1 37 37 H 1.09002 * 109.47280 * 179.97438 * 4 2 1 38 38 H 1.08001 * 120.16628 * 359.95395 * 8 7 6 39 39 H 0.97001 * 119.99846 * 324.85359 * 10 9 8 40 40 H 0.97008 * 120.00051 * 359.97438 * 15 13 11 41 41 H 1.08999 * 109.47356 * 300.00185 * 16 15 13 42 42 H 1.09003 * 109.47401 * 59.99264 * 16 15 13 43 43 H 0.97000 * 120.00615 * 180.02562 * 20 19 17 44 44 H 1.08002 * 119.79416 * 179.97438 * 25 9 8 45 45 H 1.07995 * 120.01306 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 7 1.7773 -1.9487 1.5288 7 6 2.3901 -2.2516 2.7056 8 6 2.4611 -3.4052 3.4870 9 6 3.1870 -3.3910 4.6647 10 7 3.2615 -4.5452 5.4512 11 6 4.3944 -4.8309 6.1230 12 8 5.3202 -4.0461 6.1131 13 6 4.5105 -6.1133 6.8797 14 8 3.5846 -6.8978 6.8900 15 7 5.6432 -6.3988 7.5520 16 6 5.7570 -7.6564 8.2947 17 6 7.1113 -7.7314 8.9513 18 1 7.8166 -6.9228 8.8281 19 6 7.4496 -8.8316 9.7102 20 7 8.6313 -8.8968 10.2837 21 14 6.2294 -10.2298 9.9240 22 1 6.4245 -11.2269 8.8409 23 1 6.4476 -10.8803 11.2409 24 1 4.8460 -9.6936 9.8598 25 6 3.8443 -2.2310 5.0704 26 6 3.7791 -1.0880 4.3037 27 6 3.0549 -1.0875 3.1205 28 8 2.8068 -0.1538 2.1749 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 1.9516 -4.3047 3.1744 39 1 2.4977 -5.1399 5.5132 40 1 6.3831 -5.7716 7.5440 41 1 4.9799 -7.6993 9.0578 42 1 5.6391 -8.4954 7.6088 43 1 8.8695 -9.6710 10.8173 44 1 4.4086 -2.2281 5.9913 45 1 4.2913 -0.1927 4.6239 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427870333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:39 Heat of formation + Delta-G solvation = -59.399331 kcal Electronic energy + Delta-G solvation = -28590.844250 eV Core-core repulsion = 24380.900106 eV Total energy + Delta-G solvation = -4209.944144 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.41176 -42.14083 -40.25119 -38.94931 -37.88051 -36.64539 -35.91866 -35.28073 -34.42274 -31.45480 -30.54846 -30.00857 -28.26063 -28.24865 -26.58934 -25.12756 -24.37544 -23.26248 -23.09667 -21.64525 -20.85895 -20.23713 -19.49811 -18.67319 -18.41647 -17.89316 -17.57990 -17.34310 -17.06733 -16.77003 -16.07996 -15.89092 -15.74782 -15.32530 -15.09316 -15.03230 -14.93812 -14.77732 -14.43326 -14.38718 -14.11849 -13.72890 -13.33721 -13.14250 -13.12440 -12.94844 -12.73381 -12.69688 -12.65447 -12.59301 -12.55482 -12.03382 -11.96277 -11.91923 -11.69796 -11.64036 -11.43842 -10.93205 -10.82389 -10.19492 -9.62207 -9.40892 -8.39563 -6.49074 -0.46873 -0.26913 0.36825 1.09413 1.29003 1.35907 1.36854 1.39158 1.49908 1.98987 2.28834 2.44652 2.45630 2.71921 2.95539 3.32928 3.34578 3.67361 3.76768 3.83676 3.84568 4.02709 4.08429 4.17513 4.42867 4.64992 4.68211 4.71907 4.73707 4.81143 4.89515 4.90793 4.91762 4.93808 4.95901 4.96931 5.04502 5.09063 5.13113 5.23873 5.27672 5.30726 5.34218 5.47657 5.76945 6.03076 6.38836 6.46879 6.50846 6.63540 6.87273 7.17453 8.75222 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.034020 B = 0.001725 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.845206 B =16230.935844 C =16614.960380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.023 3.977 3 C -0.145 4.145 4 C -0.138 4.138 5 C 0.263 3.737 6 N -0.499 5.499 7 C 0.023 3.977 8 C -0.088 4.088 9 C 0.144 3.856 10 N -0.631 5.631 11 C 0.524 3.476 12 O -0.511 6.511 13 C 0.501 3.499 14 O -0.550 6.550 15 N -0.670 5.670 16 C 0.228 3.772 17 C -0.555 4.555 18 H 0.055 0.945 19 C 0.026 3.974 20 N -0.931 5.931 21 Si 0.942 3.058 22 H -0.264 1.264 23 H -0.276 1.276 24 H -0.251 1.251 25 C -0.099 4.099 26 C -0.065 4.065 27 C -0.020 4.020 28 O -0.213 6.213 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.156 0.844 39 H 0.434 0.566 40 H 0.415 0.585 41 H 0.032 0.968 42 H 0.029 0.971 43 H 0.273 0.727 44 H 0.157 0.843 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.950 21.495 -22.357 35.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.022 3.978 3 C -0.203 4.203 4 C -0.196 4.196 5 C 0.051 3.949 6 N -0.228 5.228 7 C -0.089 4.089 8 C -0.109 4.109 9 C 0.049 3.951 10 N -0.278 5.278 11 C 0.306 3.694 12 O -0.386 6.386 13 C 0.280 3.720 14 O -0.429 6.429 15 N -0.320 5.320 16 C 0.106 3.894 17 C -0.593 4.593 18 H 0.073 0.927 19 C -0.175 4.175 20 N -0.569 5.569 21 Si 0.765 3.235 22 H -0.189 1.189 23 H -0.201 1.201 24 H -0.174 1.174 25 C -0.118 4.118 26 C -0.084 4.084 27 C -0.070 4.070 28 O -0.105 6.105 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.122 0.878 37 H 0.073 0.927 38 H 0.173 0.827 39 H 0.275 0.725 40 H 0.251 0.749 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.082 0.918 44 H 0.174 0.826 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -18.127 20.894 -22.518 35.668 hybrid contribution 0.541 -0.560 1.068 1.321 sum -17.587 20.334 -21.451 34.393 Atomic orbital electron populations 1.21926 0.90172 1.03255 1.04073 1.19633 0.97517 0.95426 0.85238 1.21948 1.01727 0.92241 1.04353 1.21935 1.01271 1.00877 0.95469 1.27341 0.88007 0.87847 0.91658 1.70561 1.24808 1.13915 1.13513 1.19695 0.99852 0.95362 0.93975 1.19951 1.02251 0.97474 0.91221 1.17431 1.00084 0.86394 0.91227 1.42944 1.16029 1.23917 1.44957 1.20091 0.82743 0.86735 0.79875 1.90756 1.38744 1.48860 1.60221 1.19973 0.83735 0.87047 0.81201 1.90728 1.38824 1.50268 1.63098 1.45947 1.16129 1.22500 1.47384 1.19392 0.96553 0.82150 0.91343 1.21258 0.99426 1.06333 1.32299 0.92666 1.25656 0.97027 1.00705 0.94075 1.69990 1.22089 1.31491 1.33369 0.85796 0.80097 0.79213 0.78444 1.18863 1.20075 1.17427 1.21268 0.99590 0.89829 1.01149 1.19970 0.98476 1.00198 0.89803 1.20599 1.03858 0.88475 0.94073 1.84505 1.57769 1.39168 1.29021 0.92468 0.87855 0.92235 0.92237 0.88097 0.92028 0.92262 0.87806 0.92700 0.82672 0.72522 0.74879 0.95021 0.95311 0.91764 0.82580 0.81737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.45 71.98 0.61 -0.60 16 2 C 0.02 0.26 0.99 -52.93 -0.05 0.21 16 3 C -0.15 -1.13 7.98 71.98 0.57 -0.56 16 4 C -0.14 -1.31 8.45 71.98 0.61 -0.70 16 5 C 0.26 5.22 6.40 88.39 0.57 5.78 16 6 N -0.50 -11.96 11.32 -296.30 -3.35 -15.32 16 7 C 0.02 0.57 7.23 39.30 0.28 0.85 16 8 C -0.09 -1.98 10.01 22.61 0.23 -1.75 16 9 C 0.14 3.36 6.29 38.16 0.24 3.60 16 10 N -0.63 -15.03 5.32 -304.84 -1.62 -16.65 16 11 C 0.52 15.60 7.73 87.24 0.67 16.28 16 12 O -0.51 -16.53 13.89 -3.33 -0.05 -16.58 16 13 C 0.50 17.82 7.89 87.24 0.69 18.50 16 14 O -0.55 -21.22 16.48 -3.29 -0.05 -21.27 16 15 N -0.67 -26.68 5.54 -468.26 -2.59 -29.27 16 16 C 0.23 10.62 4.50 85.63 0.38 11.00 16 17 C -0.56 -30.17 9.83 25.60 0.25 -29.92 16 18 H 0.06 3.23 7.84 -2.91 -0.02 3.20 16 19 C 0.03 1.43 5.47 84.66 0.46 1.90 16 20 N -0.93 -55.10 13.96 21.45 0.30 -54.80 16 21 Si 0.94 42.14 27.47 68.60 1.88 44.02 16 22 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 24 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 25 C -0.10 -2.26 8.67 22.43 0.19 -2.07 16 26 C -0.07 -1.35 10.05 22.28 0.22 -1.13 16 27 C -0.02 -0.46 7.43 22.90 0.17 -0.29 16 28 O -0.21 -4.67 10.12 -10.58 -0.11 -4.78 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.10 0.26 8.14 -2.38 -0.02 0.25 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 39 H 0.43 8.80 8.30 -92.71 -0.77 8.03 16 40 H 0.41 15.88 7.79 -92.70 -0.72 15.16 16 41 H 0.03 1.50 7.20 -2.39 -0.02 1.48 16 42 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 43 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 44 H 0.16 3.71 6.20 -2.91 -0.02 3.69 16 45 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -68.57 384.82 0.02 -68.55 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: -0.50 Total: 25.00 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 6.10 Total: 21.11 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -7.27 Total: -116.05 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -0.21 Total: -42.63 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.88 Total: 44.02 kcal Total: -68.57 0.02 -68.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427870333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.152 kcal (2) G-P(sol) polarization free energy of solvation -68.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds