Wall clock time and date at job start Wed Apr 1 2020 03:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 119.99592 * 2 1 4 4 N 1.46907 * 109.47068 * 234.25192 * 3 2 1 5 5 C 1.46902 * 111.00135 * 199.54917 * 4 3 2 6 6 C 1.50705 * 109.47152 * 75.90368 * 5 4 3 7 7 H 1.07999 * 119.99584 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99990 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99915 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99923 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46865 * 60.00302 * 10 8 6 12 12 H 1.48498 * 109.46889 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47041 * 300.00154 * 10 8 6 14 14 C 1.46896 * 111.00005 * 75.59410 * 4 3 2 15 15 H 1.09002 * 110.43308 * 308.91577 * 14 4 3 16 16 C 1.54630 * 110.48600 * 71.59540 * 14 4 3 17 17 C 1.54482 * 101.76678 * 143.47838 * 16 14 4 18 18 N 1.46768 * 105.46844 * 334.58455 * 17 16 14 19 19 C 1.39930 * 124.34504 * 196.99331 * 18 17 16 20 20 C 1.38893 * 120.06910 * 5.67425 * 19 18 17 21 21 C 1.38094 * 119.92416 * 179.97438 * 20 19 18 22 22 C 1.38299 * 120.07119 * 0.02562 * 21 20 19 23 23 C 1.38261 * 120.14545 * 359.97438 * 22 21 20 24 24 N 1.48009 * 119.96858 * 179.97438 * 23 22 21 25 25 O 1.21809 * 120.00108 * 0.02562 * 24 23 22 26 26 O 1.21799 * 120.00287 * 179.97438 * 24 23 22 27 27 C 1.38138 * 120.06569 * 359.72332 * 23 22 21 28 28 C 1.34419 * 111.30140 * 17.01857 * 18 17 16 29 29 O 1.21287 * 124.93833 * 179.55985 * 28 18 17 30 30 H 1.07999 * 119.99890 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99850 * 179.97438 * 1 2 3 32 32 H 1.07999 * 119.99890 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47581 * 354.25478 * 3 2 1 34 34 H 1.09006 * 109.47481 * 114.25863 * 3 2 1 35 35 H 1.08999 * 109.46840 * 195.90656 * 5 4 3 36 36 H 1.09003 * 109.46934 * 315.90557 * 5 4 3 37 37 H 0.96999 * 119.99674 * 179.97438 * 9 8 6 38 38 H 1.09002 * 110.96977 * 261.59574 * 16 14 4 39 39 H 1.09006 * 110.96934 * 25.35949 * 16 14 4 40 40 H 1.09000 * 110.24478 * 215.58561 * 17 16 14 41 41 H 1.08998 * 110.24548 * 93.58461 * 17 16 14 42 42 H 1.07999 * 120.03821 * 0.02562 * 20 19 18 43 43 H 1.08001 * 119.95910 * 179.97438 * 21 20 19 44 44 H 1.08003 * 119.92912 * 180.02562 * 22 21 20 45 45 H 1.07998 * 120.03778 * 180.27794 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0090 1.3247 -1.1241 5 6 4.0617 2.3266 -0.9092 6 6 5.0514 1.8065 0.1013 7 1 4.9126 0.8293 0.5396 8 6 6.1347 2.5778 0.4653 9 7 6.3040 3.7677 -0.0690 10 14 7.3619 1.9329 1.7173 11 1 7.9701 0.6759 1.2121 12 1 8.4259 2.9458 1.9345 13 1 6.6650 1.6647 3.0008 14 6 2.3110 1.5588 -2.3952 15 1 1.4767 0.8659 -2.5045 16 6 1.8177 3.0218 -2.4802 17 6 2.0237 3.3372 -3.9784 18 7 3.0898 2.4331 -4.4258 19 6 3.8251 2.6017 -5.6043 20 6 3.6480 3.7415 -6.3780 21 6 4.3757 3.9052 -7.5402 22 6 5.2795 2.9354 -7.9342 23 6 5.4581 1.7996 -7.1662 24 7 6.4261 0.7640 -7.5919 25 8 7.0652 0.9127 -8.6181 26 8 6.5843 -0.2365 -6.9156 27 6 4.7379 1.6329 -5.9993 28 6 3.2686 1.4220 -3.5582 29 8 4.0794 0.5296 -3.6892 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3596 2.1310 -0.1029 34 1 2.6108 1.4088 0.9370 35 1 4.5735 2.5235 -1.8512 36 1 3.6149 3.2492 -0.5387 37 1 7.0659 4.3104 0.1874 38 1 0.7649 3.0950 -2.2074 39 1 2.4271 3.6759 -1.8565 40 1 2.3308 4.3752 -4.1066 41 1 1.1064 3.1431 -4.5343 42 1 2.9426 4.4994 -6.0706 43 1 4.2381 4.7910 -8.1424 44 1 5.8477 3.0659 -8.8434 45 1 4.8810 0.7477 -5.3975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428833105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:36 Heat of formation + Delta-G solvation = 39.340175 kcal Electronic energy + Delta-G solvation = -30638.553670 eV Core-core repulsion = 26432.891192 eV Total energy + Delta-G solvation = -4205.662478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.11944 -41.27533 -39.13685 -37.18685 -36.45257 -36.29440 -33.56565 -32.95970 -32.00031 -31.63396 -29.10270 -27.81083 -26.96176 -26.46247 -24.42294 -23.42690 -23.18804 -22.04491 -20.93997 -19.77453 -19.13440 -18.76584 -18.46344 -17.43580 -17.15832 -16.97172 -16.78045 -16.21341 -15.73206 -15.16548 -14.92387 -14.52636 -14.27360 -14.10006 -13.96723 -13.83556 -13.52550 -13.15731 -12.90139 -12.73869 -12.49211 -12.33144 -12.13748 -12.06285 -11.58115 -11.46615 -11.35080 -11.09548 -11.05129 -11.02547 -10.90741 -10.73345 -10.57326 -10.42779 -9.94571 -9.71399 -9.55863 -9.40568 -9.09640 -8.49900 -8.28408 -7.53333 -6.11121 -4.12152 -0.16255 0.82003 1.34199 1.43339 2.42609 2.57850 2.68729 3.29619 3.31356 3.35627 3.39971 4.10516 4.26482 4.41149 4.44243 4.54320 4.58861 4.69656 4.76045 4.83552 4.92582 4.95127 5.21933 5.25463 5.33433 5.39898 5.41567 5.47756 5.60035 5.71563 5.76868 5.84673 5.85787 5.88461 6.04190 6.22905 6.28851 6.39811 6.62133 6.77173 6.86188 6.87955 7.02514 7.10863 7.65608 7.73404 7.84542 7.96926 8.14385 8.35078 8.94453 9.52659 10.99498 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008867 B = 0.003840 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.941250 B = 7290.199124 C = 8777.385564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.122 4.122 3 C 0.084 3.916 4 N -0.509 5.509 5 C 0.194 3.806 6 C -0.506 4.506 7 H 0.066 0.934 8 C 0.057 3.943 9 N -0.900 5.900 10 Si 0.899 3.101 11 H -0.274 1.274 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.063 3.937 15 H 0.113 0.887 16 C -0.175 4.175 17 C 0.104 3.896 18 N -0.566 5.566 19 C 0.189 3.811 20 C -0.116 4.116 21 C -0.087 4.087 22 C -0.094 4.094 23 C -0.012 4.012 24 N 0.028 4.972 25 O -0.166 6.166 26 O -0.148 6.148 27 C -0.102 4.102 28 C 0.529 3.471 29 O -0.471 6.471 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.033 0.967 34 H 0.099 0.901 35 H 0.026 0.974 36 H -0.001 1.001 37 H 0.262 0.738 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.144 0.856 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.392 3.594 -11.721 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.141 4.141 3 C -0.044 4.044 4 N -0.233 5.233 5 C 0.070 3.930 6 C -0.544 4.544 7 H 0.084 0.916 8 C -0.144 4.144 9 N -0.540 5.540 10 Si 0.727 3.273 11 H -0.200 1.200 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.050 4.050 15 H 0.131 0.869 16 C -0.215 4.215 17 C -0.019 4.019 18 N -0.290 5.290 19 C 0.092 3.908 20 C -0.138 4.138 21 C -0.106 4.106 22 C -0.114 4.114 23 C -0.096 4.096 24 N 0.548 4.452 25 O -0.380 6.380 26 O -0.367 6.367 27 C -0.123 4.123 28 C 0.317 3.683 29 O -0.341 6.341 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.130 0.870 33 H 0.051 0.949 34 H 0.117 0.883 35 H 0.044 0.956 36 H 0.017 0.983 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.162 0.838 43 H 0.167 0.833 44 H 0.169 0.831 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -13.049 3.267 -11.542 17.725 hybrid contribution 0.638 0.432 0.554 0.949 sum -12.411 3.699 -10.987 16.983 Atomic orbital electron populations 1.23719 0.95895 1.01141 1.04850 1.23181 0.95294 0.99624 0.95986 1.21226 0.93806 0.93118 0.96202 1.62085 1.11020 1.52242 0.97918 1.19824 0.87816 0.87908 0.97442 1.21049 1.07641 1.02776 1.22943 0.91624 1.24964 0.97853 0.94839 0.96768 1.69928 1.30151 1.10297 1.43577 0.86527 0.80654 0.78713 0.81404 1.19983 1.21362 1.20150 1.22369 0.95567 0.95593 0.91495 0.86923 1.23451 1.03741 0.99336 0.94935 1.22226 0.89232 0.94301 0.96108 1.45921 1.35457 1.27957 1.19679 1.17461 0.92533 0.93842 0.86928 1.21227 1.01273 0.96196 0.95066 1.20908 0.94817 0.98757 0.96149 1.20945 0.98782 0.91426 1.00280 1.20843 0.97685 0.91763 0.99260 1.43585 1.00232 1.01526 0.99844 1.94493 1.45659 1.84218 1.13659 1.94609 1.70820 1.18234 1.52988 1.21482 0.93808 1.02142 0.94882 1.21069 0.83624 0.80160 0.83420 1.90636 1.34334 1.34167 1.74977 0.89155 0.88970 0.86997 0.94860 0.88291 0.95614 0.98289 0.92830 0.88936 0.87966 0.89585 0.90064 0.83801 0.83275 0.83113 0.79755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.56 14.32 29.01 0.42 -2.15 16 2 C -0.12 -1.76 9.06 -36.03 -0.33 -2.08 16 3 C 0.08 1.40 5.16 -4.97 -0.03 1.37 16 4 N -0.51 -10.00 4.34 -229.53 -1.00 -11.00 16 5 C 0.19 4.69 3.53 -4.97 -0.02 4.67 16 6 C -0.51 -13.84 8.52 -34.44 -0.29 -14.14 16 7 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 10 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 11 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.06 0.99 2.90 -67.73 -0.20 0.80 16 15 H 0.11 1.57 7.52 -51.93 -0.39 1.18 16 16 C -0.18 -2.14 5.61 -25.10 -0.14 -2.28 16 17 C 0.10 1.05 6.51 -3.12 -0.02 1.03 16 18 N -0.57 -8.15 3.14 -112.26 -0.35 -8.50 16 19 C 0.19 2.64 6.60 -83.69 -0.55 2.09 16 20 C -0.12 -1.16 9.42 -39.39 -0.37 -1.53 16 21 C -0.09 -0.76 10.04 -39.61 -0.40 -1.16 16 22 C -0.09 -1.04 9.55 -39.55 -0.38 -1.42 16 23 C -0.01 -0.18 6.85 -79.98 -0.55 -0.73 16 24 N 0.03 0.47 4.45 33.95 0.15 0.62 16 25 O -0.17 -2.70 18.44 -29.46 -0.54 -3.24 16 26 O -0.15 -2.79 18.45 -29.46 -0.54 -3.33 16 27 C -0.10 -1.66 8.80 -39.39 -0.35 -2.00 16 28 C 0.53 9.56 6.00 -10.86 -0.07 9.49 16 29 O -0.47 -10.39 14.81 5.55 0.08 -10.31 16 30 H 0.09 0.96 7.84 -52.49 -0.41 0.55 16 31 H 0.09 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.03 0.49 6.87 -51.93 -0.36 0.13 16 34 H 0.10 1.87 7.31 -51.93 -0.38 1.49 16 35 H 0.03 0.70 6.72 -51.93 -0.35 0.35 16 36 H 0.00 -0.01 6.70 -51.93 -0.35 -0.36 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.10 1.54 5.78 -51.93 -0.30 1.24 16 40 H 0.09 0.73 7.24 -51.93 -0.38 0.36 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.14 0.98 6.75 -52.49 -0.35 0.63 16 43 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.15 1.38 7.60 -52.48 -0.40 0.98 16 45 H 0.19 3.57 4.80 -52.49 -0.25 3.32 16 LS Contribution 377.78 15.07 5.69 5.69 Total: -1.00 -33.47 377.78 -9.73 -43.20 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.58 Total: 2.07 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -3.36 Total: -6.53 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.46 Total: -44.24 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -1.00 Total: -16.88 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.47 -9.73 -43.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428833105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.539 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds