Wall clock time and date at job start Wed Apr 1 2020 03:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99900 * 2 1 4 4 N 1.46903 * 109.47183 * 122.92833 * 3 2 1 5 5 C 1.46898 * 111.00065 * 72.07852 * 4 3 2 6 6 C 1.50696 * 109.47435 * 284.93589 * 5 4 3 7 7 H 1.08001 * 119.99961 * 354.41069 * 6 5 4 8 8 C 1.37873 * 120.00394 * 174.41882 * 6 5 4 9 9 N 1.31516 * 119.99837 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00334 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47059 * 60.00086 * 10 8 6 12 12 H 1.48502 * 109.47472 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47327 * 300.00520 * 10 8 6 14 14 C 1.46899 * 111.00067 * 196.03774 * 4 3 2 15 15 H 1.08999 * 110.53496 * 184.88614 * 14 4 3 16 16 C 1.54625 * 110.49001 * 62.27257 * 14 4 3 17 17 C 1.54651 * 101.68484 * 216.31169 * 16 14 4 18 18 N 1.46759 * 105.38891 * 25.76421 * 17 16 14 19 19 C 1.39924 * 124.35516 * 162.85411 * 18 17 16 20 20 C 1.38889 * 120.07121 * 174.62570 * 19 18 17 21 21 C 1.38091 * 119.92765 * 180.25840 * 20 19 18 22 22 C 1.38305 * 120.06911 * 359.41931 * 21 20 19 23 23 C 1.38254 * 120.14279 * 0.60036 * 22 21 20 24 24 N 1.48009 * 119.96705 * 179.70230 * 23 22 21 25 25 O 1.21801 * 119.99985 * 179.97438 * 24 23 22 26 26 O 1.21793 * 120.00086 * 359.97438 * 24 23 22 27 27 C 1.38133 * 120.06828 * 359.68139 * 23 22 21 28 28 C 1.34421 * 111.29670 * 342.59234 * 18 17 16 29 29 O 1.21290 * 124.94273 * 180.64770 * 28 18 17 30 30 H 1.07998 * 119.99957 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.00192 * 180.02562 * 1 2 3 32 32 H 1.07992 * 119.99846 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.47178 * 2.92561 * 3 2 1 34 34 H 1.08999 * 109.47336 * 242.92544 * 3 2 1 35 35 H 1.09009 * 109.46679 * 44.93254 * 5 4 3 36 36 H 1.08992 * 109.47458 * 164.93019 * 5 4 3 37 37 H 0.97003 * 120.00313 * 179.97438 * 9 8 6 38 38 H 1.09005 * 110.96587 * 334.64449 * 16 14 4 39 39 H 1.09003 * 110.96809 * 98.36724 * 16 14 4 40 40 H 1.09008 * 110.39970 * 266.73741 * 17 16 14 41 41 H 1.09006 * 110.18426 * 144.68613 * 17 16 14 42 42 H 1.08006 * 120.03639 * 359.97438 * 20 19 18 43 43 H 1.07997 * 119.96105 * 179.70359 * 21 20 19 44 44 H 1.07995 * 119.92798 * 180.28504 * 22 21 20 45 45 H 1.08001 * 120.03515 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9604 1.3527 1.1625 5 6 4.0976 0.4394 0.9879 6 6 3.6381 -0.9806 1.1961 7 1 2.6278 -1.1789 1.5224 8 6 4.5074 -2.0267 0.9703 9 7 5.7375 -1.7852 0.5726 10 14 3.9380 -3.7868 1.2291 11 1 2.7909 -4.0732 0.3305 12 1 5.0526 -4.7182 0.9203 13 1 3.5174 -3.9684 2.6417 14 6 3.4208 2.7244 1.4163 15 1 4.1517 2.7390 2.2248 16 6 2.2238 3.6438 1.7522 17 6 2.6469 4.9686 1.0757 18 7 3.5527 4.5789 -0.0112 19 6 3.9006 5.4069 -1.0842 20 6 4.8525 4.9892 -2.0054 21 6 5.1975 5.8109 -3.0602 22 6 4.5876 7.0436 -3.2066 23 6 3.6400 7.4624 -2.2912 24 7 2.9945 8.7851 -2.4480 25 8 2.1593 9.1545 -1.6421 26 8 3.2986 9.5041 -3.3828 27 6 3.2947 6.6476 -1.2306 28 6 4.0096 3.3263 0.1594 29 8 4.7814 2.7608 -0.5860 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3563 2.1329 0.0525 34 1 2.6503 1.3859 -0.9150 35 1 4.4988 0.5474 -0.0199 36 1 4.8726 0.6809 1.7152 37 1 6.3493 -2.5211 0.4141 38 1 1.3014 3.2571 1.3188 39 1 2.1219 3.7734 2.8297 40 1 3.1663 5.6099 1.7879 41 1 1.7731 5.4811 0.6732 42 1 5.3256 4.0247 -1.8943 43 1 5.9410 5.4887 -3.7741 44 1 4.8558 7.6825 -4.0350 45 1 2.5547 6.9755 -0.5155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428833106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:39 Heat of formation + Delta-G solvation = 44.298556 kcal Electronic energy + Delta-G solvation = -30410.147587 eV Core-core repulsion = 26204.700121 eV Total energy + Delta-G solvation = -4205.447467 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.40817 -41.49054 -39.31744 -36.93276 -36.81238 -36.63021 -33.51931 -32.83415 -32.19341 -31.67966 -29.43266 -27.79186 -26.86548 -26.64010 -24.65498 -23.85320 -22.82558 -21.59745 -21.25653 -20.19312 -19.26952 -18.83031 -18.77979 -17.74190 -17.22265 -16.98343 -16.70152 -16.32145 -15.80982 -15.38398 -14.87262 -14.70127 -14.55681 -14.33685 -14.03982 -13.82065 -13.56986 -13.36329 -12.83068 -12.47552 -12.34284 -12.27004 -12.14230 -12.00091 -11.79614 -11.74436 -11.41908 -11.34930 -11.31271 -11.07638 -10.79661 -10.76478 -10.58506 -10.38326 -9.99792 -9.86123 -9.65913 -9.41968 -8.68522 -8.48433 -8.46651 -7.53942 -6.08326 -4.09498 -0.38801 0.59778 1.14036 1.14799 2.38161 2.44040 2.90926 3.13126 3.27317 3.32828 3.34494 3.98783 4.16649 4.25453 4.34552 4.36605 4.45886 4.55660 4.70308 4.78654 4.89965 4.92419 5.06439 5.15298 5.24912 5.35442 5.35974 5.46766 5.60879 5.67058 5.74584 5.86228 5.88826 5.92403 6.01963 6.12212 6.13517 6.46697 6.52337 6.66959 6.96018 7.31954 7.38862 7.42759 7.43012 7.67188 7.79160 7.95421 8.01130 8.36622 8.95698 9.51838 11.01498 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018633 B = 0.002692 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.322578 B =10398.048207 C =11012.464286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.111 4.111 3 C 0.080 3.920 4 N -0.499 5.499 5 C 0.186 3.814 6 C -0.512 4.512 7 H 0.072 0.928 8 C 0.057 3.943 9 N -0.892 5.892 10 Si 0.893 3.107 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.060 3.940 15 H 0.123 0.877 16 C -0.127 4.127 17 C 0.092 3.908 18 N -0.566 5.566 19 C 0.184 3.816 20 C -0.110 4.110 21 C -0.084 4.084 22 C -0.089 4.089 23 C -0.017 4.017 24 N 0.031 4.969 25 O -0.162 6.162 26 O -0.161 6.161 27 C -0.109 4.109 28 C 0.487 3.513 29 O -0.481 6.481 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.145 0.855 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.023 0.977 36 H 0.025 0.975 37 H 0.262 0.738 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.175 0.825 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 16.508 -2.335 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.129 4.129 3 C -0.047 4.047 4 N -0.222 5.222 5 C 0.061 3.939 6 C -0.551 4.551 7 H 0.090 0.910 8 C -0.145 4.145 9 N -0.531 5.531 10 Si 0.721 3.279 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.201 1.201 14 C -0.053 4.053 15 H 0.141 0.859 16 C -0.165 4.165 17 C -0.030 4.030 18 N -0.290 5.290 19 C 0.087 3.913 20 C -0.130 4.130 21 C -0.104 4.104 22 C -0.110 4.110 23 C -0.100 4.100 24 N 0.550 4.450 25 O -0.378 6.378 26 O -0.377 6.377 27 C -0.131 4.131 28 C 0.274 3.726 29 O -0.352 6.352 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.162 0.838 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.192 0.808 43 H 0.170 0.830 44 H 0.170 0.830 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.218 15.222 -2.247 15.955 hybrid contribution 0.065 -0.211 -0.604 0.643 sum -4.152 15.011 -2.851 15.833 Atomic orbital electron populations 1.23561 0.95895 1.00433 1.07055 1.23580 0.95254 1.00278 0.93739 1.21273 0.95296 0.95826 0.92344 1.62682 1.20096 1.01585 1.37856 1.19974 0.86180 0.90265 0.97436 1.21217 0.98727 0.89930 1.45182 0.91020 1.24986 0.94910 0.99188 0.95407 1.69963 1.05071 1.32044 1.45981 0.86637 0.78179 0.84289 0.78802 1.20190 1.21334 1.20099 1.22745 0.96917 0.91290 0.94380 0.85918 1.22858 0.99115 0.91856 1.02636 1.22447 0.93397 0.98954 0.88195 1.46257 1.46320 1.14400 1.22056 1.17605 0.94885 0.89662 0.89116 1.22283 0.95217 1.02832 0.92703 1.21149 0.99284 0.92039 0.97900 1.21016 0.94166 0.97418 0.98354 1.20709 1.02341 0.85438 1.01507 1.43599 0.99433 1.02457 0.99499 1.94534 1.26614 1.77814 1.38847 1.94532 1.67106 1.52232 1.23783 1.20454 1.01511 0.92877 0.98272 1.23031 0.80204 0.79902 0.89422 1.90672 1.32563 1.63287 1.48685 0.90124 0.89154 0.83771 0.92357 0.94189 0.95897 0.95711 0.92809 0.88682 0.88001 0.89658 0.89544 0.80806 0.83040 0.83002 0.82794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.67 14.32 29.01 0.42 -3.26 16 2 C -0.11 -2.08 8.23 -36.03 -0.30 -2.37 16 3 C 0.08 1.44 4.47 -4.98 -0.02 1.42 16 4 N -0.50 -9.50 4.48 -229.54 -1.03 -10.53 16 5 C 0.19 4.51 4.13 -4.98 -0.02 4.49 16 6 C -0.51 -13.35 7.02 -34.44 -0.24 -13.59 16 7 H 0.07 1.83 5.94 -52.49 -0.31 1.52 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 10 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 14 C 0.06 0.89 2.99 -67.72 -0.20 0.69 16 15 H 0.12 1.79 7.91 -51.93 -0.41 1.38 16 16 C -0.13 -1.27 6.60 -25.01 -0.17 -1.43 16 17 C 0.09 0.78 6.51 -3.03 -0.02 0.76 16 18 N -0.57 -6.86 3.14 -112.16 -0.35 -7.21 16 19 C 0.18 2.18 6.60 -83.69 -0.55 1.63 16 20 C -0.11 -1.32 9.29 -39.39 -0.37 -1.69 16 21 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 22 C -0.09 -0.85 9.55 -39.55 -0.38 -1.23 16 23 C -0.02 -0.18 6.85 -79.98 -0.55 -0.73 16 24 N 0.03 0.39 4.45 33.94 0.15 0.54 16 25 O -0.16 -2.13 18.45 -29.46 -0.54 -2.67 16 26 O -0.16 -2.09 18.44 -29.46 -0.54 -2.63 16 27 C -0.11 -1.15 8.92 -39.39 -0.35 -1.50 16 28 C 0.49 7.64 6.17 -10.86 -0.07 7.58 16 29 O -0.48 -9.37 12.48 5.55 0.07 -9.30 16 30 H 0.08 1.12 7.84 -52.49 -0.41 0.71 16 31 H 0.09 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.14 3.15 5.24 -52.49 -0.27 2.88 16 33 H 0.06 0.89 5.41 -51.93 -0.28 0.61 16 34 H 0.04 0.81 7.02 -51.93 -0.36 0.45 16 35 H 0.02 0.63 6.45 -51.92 -0.33 0.30 16 36 H 0.02 0.65 7.79 -51.93 -0.40 0.24 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.09 1.00 5.93 -51.93 -0.31 0.69 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.09 0.58 7.25 -51.93 -0.38 0.20 16 42 H 0.17 2.49 5.24 -52.48 -0.28 2.21 16 43 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.15 1.17 7.60 -52.49 -0.40 0.77 16 45 H 0.15 1.39 6.30 -52.49 -0.33 1.06 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -31.07 369.36 -9.58 -40.66 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.31 Total: 3.79 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -3.31 Total: -8.97 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: -0.49 Total: -42.18 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -1.02 Total: -14.60 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.07 -9.58 -40.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428833106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.957 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds