Wall clock time and date at job start Wed Apr 1 2020 03:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99900 * 2 1 4 4 N 1.46903 * 109.47183 * 122.92833 * 3 2 1 5 5 C 1.46898 * 111.00065 * 72.07852 * 4 3 2 6 6 C 1.50696 * 109.47435 * 284.93589 * 5 4 3 7 7 H 1.08001 * 119.99961 * 354.41069 * 6 5 4 8 8 C 1.37873 * 120.00394 * 174.41882 * 6 5 4 9 9 N 1.31516 * 119.99837 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00334 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47059 * 60.00086 * 10 8 6 12 12 H 1.48502 * 109.47472 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47327 * 300.00520 * 10 8 6 14 14 C 1.46899 * 111.00067 * 196.03774 * 4 3 2 15 15 H 1.08999 * 110.53496 * 184.88614 * 14 4 3 16 16 C 1.54625 * 110.49001 * 62.27257 * 14 4 3 17 17 C 1.54651 * 101.68484 * 216.31169 * 16 14 4 18 18 N 1.46759 * 105.38891 * 25.76421 * 17 16 14 19 19 C 1.39924 * 124.35516 * 162.85411 * 18 17 16 20 20 C 1.38889 * 120.07121 * 174.62570 * 19 18 17 21 21 C 1.38091 * 119.92765 * 180.25840 * 20 19 18 22 22 C 1.38305 * 120.06911 * 359.41931 * 21 20 19 23 23 C 1.38254 * 120.14279 * 0.60036 * 22 21 20 24 24 N 1.48009 * 119.96705 * 179.70230 * 23 22 21 25 25 O 1.21801 * 119.99985 * 179.97438 * 24 23 22 26 26 O 1.21793 * 120.00086 * 359.97438 * 24 23 22 27 27 C 1.38133 * 120.06828 * 359.68139 * 23 22 21 28 28 C 1.34421 * 111.29670 * 342.59234 * 18 17 16 29 29 O 1.21290 * 124.94273 * 180.64770 * 28 18 17 30 30 H 1.07998 * 119.99957 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.00192 * 180.02562 * 1 2 3 32 32 H 1.07992 * 119.99846 * 180.02562 * 2 1 3 33 33 H 1.09002 * 109.47178 * 2.92561 * 3 2 1 34 34 H 1.08999 * 109.47336 * 242.92544 * 3 2 1 35 35 H 1.09009 * 109.46679 * 44.93254 * 5 4 3 36 36 H 1.08992 * 109.47458 * 164.93019 * 5 4 3 37 37 H 0.97003 * 120.00313 * 179.97438 * 9 8 6 38 38 H 1.09005 * 110.96587 * 334.64449 * 16 14 4 39 39 H 1.09003 * 110.96809 * 98.36724 * 16 14 4 40 40 H 1.09008 * 110.39970 * 266.73741 * 17 16 14 41 41 H 1.09006 * 110.18426 * 144.68613 * 17 16 14 42 42 H 1.08006 * 120.03639 * 359.97438 * 20 19 18 43 43 H 1.07997 * 119.96105 * 179.70359 * 21 20 19 44 44 H 1.07995 * 119.92798 * 180.28504 * 22 21 20 45 45 H 1.08001 * 120.03515 * 179.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9604 1.3527 1.1625 5 6 4.0976 0.4394 0.9879 6 6 3.6381 -0.9806 1.1961 7 1 2.6278 -1.1789 1.5224 8 6 4.5074 -2.0267 0.9703 9 7 5.7375 -1.7852 0.5726 10 14 3.9380 -3.7868 1.2291 11 1 2.7909 -4.0732 0.3305 12 1 5.0526 -4.7182 0.9203 13 1 3.5174 -3.9684 2.6417 14 6 3.4208 2.7244 1.4163 15 1 4.1517 2.7390 2.2248 16 6 2.2238 3.6438 1.7522 17 6 2.6469 4.9686 1.0757 18 7 3.5527 4.5789 -0.0112 19 6 3.9006 5.4069 -1.0842 20 6 4.8525 4.9892 -2.0054 21 6 5.1975 5.8109 -3.0602 22 6 4.5876 7.0436 -3.2066 23 6 3.6400 7.4624 -2.2912 24 7 2.9945 8.7851 -2.4480 25 8 2.1593 9.1545 -1.6421 26 8 3.2986 9.5041 -3.3828 27 6 3.2947 6.6476 -1.2306 28 6 4.0096 3.3263 0.1594 29 8 4.7814 2.7608 -0.5860 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3563 2.1329 0.0525 34 1 2.6503 1.3859 -0.9150 35 1 4.4988 0.5474 -0.0199 36 1 4.8726 0.6809 1.7152 37 1 6.3493 -2.5211 0.4141 38 1 1.3014 3.2571 1.3188 39 1 2.1219 3.7734 2.8297 40 1 3.1663 5.6099 1.7879 41 1 1.7731 5.4811 0.6732 42 1 5.3256 4.0247 -1.8943 43 1 5.9410 5.4887 -3.7741 44 1 4.8558 7.6825 -4.0350 45 1 2.5547 6.9755 -0.5155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428833106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:38 Heat of formation + Delta-G solvation = 25.540424 kcal Electronic energy + Delta-G solvation = -30410.961001 eV Core-core repulsion = 26204.700121 eV Total energy + Delta-G solvation = -4206.260880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.34593 -42.55309 -40.29775 -38.32925 -37.84697 -37.69153 -34.87142 -34.57966 -33.21482 -32.83365 -30.45289 -29.30669 -28.17465 -27.64170 -26.17326 -24.74182 -23.96566 -23.07415 -22.19754 -21.30887 -20.67729 -19.86568 -19.77284 -18.67836 -18.48046 -18.10383 -17.86495 -17.67673 -16.97191 -16.64795 -16.53236 -15.84238 -15.65940 -15.39420 -15.19723 -15.04838 -14.83600 -14.35849 -14.04344 -13.83618 -13.75513 -13.49128 -13.33734 -13.22856 -12.97767 -12.85892 -12.72441 -12.56533 -12.41110 -12.37550 -12.33271 -12.25331 -12.02524 -11.57357 -11.35901 -11.24574 -11.17196 -10.70399 -10.56497 -10.12720 -9.40137 -9.11401 -8.16390 -6.23914 -1.31521 -0.25589 0.21727 0.22700 1.26397 1.40190 1.42323 1.49528 1.50139 1.54546 2.24757 2.39751 2.95649 3.15374 3.23925 3.40755 3.49031 3.52426 3.59603 3.80774 3.88653 3.96549 4.01100 4.09895 4.30631 4.33378 4.43283 4.50110 4.52746 4.58697 4.74560 4.75668 4.94288 4.99486 5.01133 5.04637 5.12660 5.21125 5.27009 5.33147 5.53957 5.67102 5.71217 5.95254 5.96870 6.09258 6.17867 6.44649 6.46151 6.79089 6.90835 7.41877 8.93981 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018633 B = 0.002692 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.322578 B =10398.048207 C =11012.464286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.154 4.154 3 C 0.091 3.909 4 N -0.500 5.500 5 C 0.207 3.793 6 C -0.511 4.511 7 H 0.078 0.922 8 C -0.001 4.001 9 N -0.936 5.936 10 Si 0.960 3.040 11 H -0.267 1.267 12 H -0.289 1.289 13 H -0.265 1.265 14 C 0.046 3.954 15 H 0.119 0.881 16 C -0.110 4.110 17 C 0.089 3.911 18 N -0.559 5.559 19 C 0.168 3.832 20 C -0.127 4.127 21 C -0.075 4.075 22 C -0.077 4.077 23 C -0.027 4.027 24 N 0.032 4.968 25 O -0.169 6.169 26 O -0.172 6.172 27 C -0.094 4.094 28 C 0.481 3.519 29 O -0.534 6.534 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.005 0.995 35 H -0.020 1.020 36 H -0.005 1.005 37 H 0.261 0.739 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.146 0.854 43 H 0.177 0.823 44 H 0.174 0.826 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.850 18.406 -1.716 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.172 4.172 3 C -0.036 4.036 4 N -0.222 5.222 5 C 0.081 3.919 6 C -0.549 4.549 7 H 0.096 0.904 8 C -0.199 4.199 9 N -0.577 5.577 10 Si 0.785 3.215 11 H -0.192 1.192 12 H -0.215 1.215 13 H -0.190 1.190 14 C -0.067 4.067 15 H 0.136 0.864 16 C -0.148 4.148 17 C -0.032 4.032 18 N -0.283 5.283 19 C 0.072 3.928 20 C -0.148 4.148 21 C -0.094 4.094 22 C -0.097 4.097 23 C -0.111 4.111 24 N 0.549 4.451 25 O -0.385 6.385 26 O -0.386 6.386 27 C -0.116 4.116 28 C 0.270 3.730 29 O -0.409 6.409 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.023 0.977 35 H -0.002 1.002 36 H 0.013 0.987 37 H 0.069 0.931 38 H 0.115 0.885 39 H 0.150 0.850 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.163 0.837 43 H 0.195 0.805 44 H 0.191 0.809 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.248 17.189 -1.616 18.725 hybrid contribution 0.949 -0.686 -0.850 1.447 sum -6.300 16.503 -2.466 17.836 Atomic orbital electron populations 1.23821 0.94538 1.02460 1.01992 1.23298 0.96472 0.98969 0.98465 1.21195 0.95027 0.97024 0.90311 1.62537 1.18129 1.03337 1.38189 1.19458 0.87213 0.91290 0.93896 1.21587 0.98748 0.90892 1.43698 0.90394 1.25888 0.94918 1.03689 0.95386 1.70128 1.06507 1.33118 1.47967 0.85571 0.77736 0.78982 0.79203 1.19181 1.21499 1.18972 1.22968 0.99602 0.90071 0.94035 0.86352 1.22880 0.96323 0.90761 1.04804 1.22831 0.94134 0.98574 0.87621 1.46182 1.46107 1.13178 1.22809 1.17635 0.95610 0.90272 0.89286 1.22222 0.95981 1.02367 0.94234 1.21368 0.99276 0.91448 0.97280 1.21285 0.92948 0.97220 0.98294 1.20862 1.02939 0.84974 1.02296 1.43743 0.99297 1.02754 0.99278 1.94524 1.26917 1.78126 1.38893 1.94531 1.67346 1.52696 1.24006 1.20511 1.01119 0.91720 0.98239 1.23041 0.79819 0.81063 0.89109 1.90664 1.34988 1.64956 1.50333 0.87003 0.87942 0.87687 0.88626 0.97742 1.00191 0.98692 0.93065 0.88490 0.84957 0.86909 0.86505 0.83654 0.80518 0.80879 0.80753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.49 14.32 67.78 0.97 -4.52 16 2 C -0.15 -5.76 8.23 25.64 0.21 -5.55 16 3 C 0.09 3.34 4.47 85.56 0.38 3.72 16 4 N -0.50 -19.62 4.48 -880.12 -3.95 -23.56 16 5 C 0.21 10.83 4.13 85.56 0.35 11.18 16 6 C -0.51 -27.92 7.02 25.60 0.18 -27.74 16 7 H 0.08 4.09 5.94 -2.91 -0.02 4.07 16 8 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 9 N -0.94 -57.19 13.29 21.45 0.28 -56.91 16 10 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 14 C 0.05 1.38 2.99 44.91 0.13 1.52 16 15 H 0.12 3.58 7.91 -2.39 -0.02 3.56 16 16 C -0.11 -1.85 6.60 31.71 0.21 -1.64 16 17 C 0.09 1.19 6.51 86.89 0.57 1.75 16 18 N -0.56 -12.98 3.14 -627.36 -1.97 -14.95 16 19 C 0.17 3.81 6.60 38.15 0.25 4.06 16 20 C -0.13 -3.12 9.29 22.39 0.21 -2.91 16 21 C -0.07 -1.31 10.04 22.25 0.22 -1.09 16 22 C -0.08 -1.30 9.55 22.29 0.21 -1.09 16 23 C -0.03 -0.54 6.85 36.36 0.25 -0.29 16 24 N 0.03 0.73 4.45 -46.52 -0.21 0.52 16 25 O -0.17 -4.02 18.45 18.89 0.35 -3.67 16 26 O -0.17 -4.12 18.44 18.90 0.35 -3.77 16 27 C -0.09 -1.75 8.92 22.39 0.20 -1.55 16 28 C 0.48 15.74 6.17 87.90 0.54 16.29 16 29 O -0.53 -22.85 12.48 -3.06 -0.04 -22.89 16 30 H 0.11 2.56 7.84 -2.91 -0.02 2.54 16 31 H 0.10 2.71 8.06 -2.91 -0.02 2.69 16 32 H 0.11 4.77 5.24 -2.91 -0.02 4.76 16 33 H 0.10 2.71 5.41 -2.39 -0.01 2.70 16 34 H 0.00 0.20 7.02 -2.39 -0.02 0.18 16 35 H -0.02 -1.20 6.45 -2.38 -0.02 -1.21 16 36 H 0.00 -0.28 7.79 -2.39 -0.02 -0.30 16 37 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 38 H 0.10 1.63 5.93 -2.38 -0.01 1.62 16 39 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.12 0.95 7.25 -2.38 -0.02 0.94 16 42 H 0.15 4.57 5.24 -2.91 -0.02 4.55 16 43 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 44 H 0.17 2.17 7.60 -2.91 -0.02 2.15 16 45 H 0.18 2.45 6.30 -2.91 -0.02 2.43 16 Total: -1.00 -74.80 369.36 3.24 -71.55 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 1.04 Total: 15.28 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 5.36 Total: -7.47 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -5.84 Total: -94.90 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: 0.66 Total: -30.33 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -74.80 3.24 -71.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428833106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.093 kcal (2) G-P(sol) polarization free energy of solvation -74.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds