Wall clock time and date at job start Wed Apr 1 2020 03:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46968 * 2 1 4 4 C 1.52998 * 109.47258 * 239.99422 * 2 1 3 5 5 O 1.42904 * 109.46996 * 119.99344 * 2 1 3 6 6 C 1.35761 * 116.99615 * 63.01187 * 5 2 1 7 7 C 1.38661 * 120.07400 * 355.45643 * 6 5 2 8 8 C 1.38007 * 120.17237 * 179.97438 * 7 6 5 9 9 C 1.39142 * 120.32272 * 0.02562 * 8 7 6 10 10 N 1.39898 * 119.93489 * 180.02562 * 9 8 7 11 11 C 1.34775 * 119.99825 * 145.01302 * 10 9 8 12 12 O 1.21377 * 120.00420 * 5.07351 * 11 10 9 13 13 C 1.49341 * 119.99337 * 185.07140 * 11 10 9 14 14 O 1.21360 * 120.00200 * 0.02562 * 13 11 10 15 15 N 1.34776 * 119.99878 * 180.02562 * 13 11 10 16 16 C 1.46496 * 120.00028 * 180.02562 * 15 13 11 17 17 C 1.50707 * 109.46922 * 179.97438 * 16 15 13 18 18 H 1.07996 * 119.99977 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99784 * 179.97438 * 17 16 15 20 20 N 1.31522 * 120.00166 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00092 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47090 * 90.00067 * 21 19 17 23 23 H 1.48500 * 109.47291 * 210.00370 * 21 19 17 24 24 H 1.48506 * 109.47005 * 330.00548 * 21 19 17 25 25 C 1.38498 * 120.13857 * 0.03833 * 9 8 7 26 26 C 1.39649 * 119.82456 * 359.93467 * 25 9 8 27 27 C 1.43201 * 120.15917 * 180.31733 * 26 25 9 28 28 N 4.92540 * 116.77769 * 111.67902 * 2 1 3 29 29 H 1.09007 * 109.46984 * 317.72270 * 1 2 3 30 30 H 1.09000 * 109.46998 * 77.72317 * 1 2 3 31 31 H 1.08998 * 109.47004 * 197.72887 * 1 2 3 32 32 H 1.09002 * 109.46847 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46801 * 299.99403 * 3 2 1 34 34 H 1.08987 * 109.47514 * 59.99843 * 3 2 1 35 35 H 1.08998 * 109.47180 * 289.73880 * 4 2 1 36 36 H 1.09003 * 109.46323 * 49.73569 * 4 2 1 37 37 H 1.09001 * 109.47221 * 169.73582 * 4 2 1 38 38 H 1.07997 * 119.90870 * 359.97438 * 7 6 5 39 39 H 1.08001 * 119.84053 * 180.02562 * 8 7 6 40 40 H 0.97005 * 119.99372 * 325.01939 * 10 9 8 41 41 H 0.97008 * 120.00086 * 359.97438 * 15 13 11 42 42 H 1.08992 * 109.47246 * 299.99643 * 16 15 13 43 43 H 1.08995 * 109.47098 * 60.00584 * 16 15 13 44 44 H 0.96998 * 119.99641 * 179.97438 * 20 19 17 45 45 H 1.07998 * 120.08660 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 2.0063 -0.6735 1.1669 6 6 1.6942 -1.9890 1.2897 7 6 0.8670 -2.5969 0.3575 8 6 0.5487 -3.9342 0.4801 9 6 1.0541 -4.6823 1.5388 10 7 0.7267 -6.0375 1.6549 11 6 1.6335 -6.9110 2.1359 12 8 2.7001 -6.5100 2.5540 13 6 1.3257 -8.3722 2.1543 14 8 0.2594 -8.7731 1.7358 15 7 2.2322 -9.2457 2.6357 16 6 1.9306 -10.6792 2.6532 17 6 3.0998 -11.4315 3.2348 18 1 3.9793 -10.8953 3.5593 19 6 3.0461 -12.8040 3.3536 20 7 1.9748 -13.4569 2.9589 21 14 4.4950 -13.7365 4.0752 22 1 4.3268 -13.8512 5.5462 23 1 4.5577 -15.0941 3.4767 24 1 5.7526 -13.0052 3.7764 25 6 1.8805 -4.0882 2.4781 26 6 2.2068 -2.7355 2.3596 27 6 3.0660 -2.1156 3.3229 28 7 3.7491 -1.6244 4.0862 29 1 -0.3633 0.7604 0.6914 30 1 -0.3633 0.2185 -1.0042 31 1 -0.3633 -0.9788 0.3129 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8898 35 1 1.8339 -1.7881 -1.1623 36 1 1.5349 -0.3242 -2.1296 37 1 3.1146 -0.5655 -1.3455 38 1 0.4707 -2.0222 -0.4666 39 1 -0.0957 -4.4023 -0.2493 40 1 -0.1529 -6.3484 1.3892 41 1 3.0847 -8.9253 2.9698 42 1 1.0445 -10.8566 3.2626 43 1 1.7469 -11.0243 1.6358 44 1 1.9373 -14.4226 3.0422 45 1 2.2726 -4.6698 3.2993 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453736859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:45 Heat of formation + Delta-G solvation = -32.472826 kcal Electronic energy + Delta-G solvation = -28898.164605 eV Core-core repulsion = 24689.388082 eV Total energy + Delta-G solvation = -4208.776523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55555 -40.60612 -38.79525 -37.77295 -36.60556 -35.17835 -34.57580 -34.02920 -32.41088 -31.78333 -29.78329 -27.97795 -27.95001 -27.58228 -24.98842 -24.33295 -23.26683 -22.01900 -20.94792 -20.02559 -19.51720 -18.54049 -17.78952 -16.77018 -16.56586 -16.30331 -15.89488 -15.70948 -15.62045 -15.24929 -15.11563 -14.76965 -14.62198 -14.27200 -13.80302 -13.68269 -13.58149 -13.48237 -13.29097 -13.18619 -12.89173 -12.66388 -12.54446 -12.48097 -12.42776 -12.18516 -12.09317 -11.94997 -11.50676 -11.35596 -11.28709 -11.04985 -10.95492 -10.93869 -10.35924 -10.12744 -9.51768 -9.38997 -9.18422 -8.86576 -8.18089 -8.09978 -6.24954 -4.32389 0.42715 0.84044 1.69606 2.43185 2.59232 2.66830 2.75100 3.22255 3.28769 3.31879 3.49371 3.61242 3.67705 4.00479 4.11016 4.21883 4.29721 4.35466 4.39599 4.51822 4.73429 4.94644 4.96348 4.99625 5.00975 5.12020 5.13270 5.14338 5.23544 5.27417 5.38750 5.50096 5.54317 5.60732 5.69427 5.75563 5.82968 5.96108 6.40862 6.87751 6.91132 7.03055 7.12664 7.31951 7.42503 7.50918 7.75373 7.83414 8.31794 8.50512 8.78603 9.34158 10.84996 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022140 B = 0.001939 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.397418 B =14435.354745 C =15199.283495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.106 3.894 3 C -0.139 4.139 4 C -0.205 4.205 5 O -0.299 6.299 6 C 0.168 3.832 7 C -0.207 4.207 8 C -0.072 4.072 9 C 0.110 3.890 10 N -0.648 5.648 11 C 0.509 3.491 12 O -0.505 6.505 13 C 0.492 3.508 14 O -0.535 6.535 15 N -0.669 5.669 16 C 0.246 3.754 17 C -0.547 4.547 18 H 0.067 0.933 19 C 0.066 3.934 20 N -0.885 5.885 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.271 1.271 25 C -0.037 4.037 26 C -0.046 4.046 27 C 0.267 3.733 28 N -0.417 5.417 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.165 0.835 39 H 0.141 0.859 40 H 0.426 0.574 41 H 0.405 0.595 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.267 0.733 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.834 27.541 -10.052 29.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.069 3.931 3 C -0.196 4.196 4 C -0.261 4.261 5 O -0.213 6.213 6 C 0.119 3.881 7 C -0.226 4.226 8 C -0.093 4.093 9 C 0.016 3.984 10 N -0.296 5.296 11 C 0.292 3.708 12 O -0.378 6.378 13 C 0.270 3.730 14 O -0.414 6.414 15 N -0.318 5.318 16 C 0.126 3.874 17 C -0.586 4.586 18 H 0.085 0.915 19 C -0.139 4.139 20 N -0.522 5.522 21 Si 0.733 3.267 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.196 1.196 25 C -0.059 4.059 26 C -0.051 4.051 27 C -0.048 4.048 28 N -0.093 5.093 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.182 0.818 39 H 0.159 0.841 40 H 0.264 0.736 41 H 0.240 0.760 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.708 28.125 -8.754 29.830 hybrid contribution 0.306 -0.846 -0.133 0.909 sum -4.402 27.279 -8.886 29.026 Atomic orbital electron populations 1.22908 0.94433 1.04753 1.03666 1.21915 0.94154 0.93221 0.83788 1.21819 1.02392 0.92216 1.03141 1.22962 1.03041 1.03034 0.97094 1.86187 1.72556 1.19111 1.43408 1.18777 0.92833 0.83438 0.93061 1.21621 1.02996 0.95977 1.01981 1.21030 0.99400 0.93523 0.95355 1.17418 1.01428 0.83803 0.95734 1.43151 1.17991 1.04776 1.63714 1.20961 0.83743 0.88519 0.77568 1.90738 1.23881 1.79680 1.43516 1.19616 0.85898 0.85798 0.81674 1.90742 1.23925 1.79165 1.47603 1.46444 1.18145 1.09663 1.57558 1.19363 0.97602 0.71996 0.98404 1.21200 1.01711 0.92196 1.43443 0.91522 1.24936 0.96522 0.97360 0.95042 1.69964 1.27755 1.08692 1.45783 0.86364 0.82071 0.79017 0.79209 1.20364 1.20946 1.19612 1.21234 0.95457 0.91097 0.98134 1.15082 1.02982 0.92444 0.94582 1.25196 0.93159 0.93395 0.93035 1.81200 1.09923 1.08142 1.10044 0.91233 0.90587 0.89658 0.91391 0.90178 0.91380 0.89447 0.90563 0.91214 0.81808 0.84110 0.73584 0.76014 0.94626 0.94640 0.92307 0.82433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.87 8.11 37.16 0.30 -0.57 16 2 C 0.11 0.63 1.11 -90.62 -0.10 0.53 16 3 C -0.14 -0.69 8.75 37.16 0.33 -0.36 16 4 C -0.20 -1.00 8.07 37.16 0.30 -0.70 16 5 O -0.30 -2.75 9.22 -18.99 -0.18 -2.92 16 6 C 0.17 1.54 6.08 -38.70 -0.24 1.31 16 7 C -0.21 -1.40 5.73 -39.51 -0.23 -1.62 16 8 C -0.07 -0.52 9.95 -39.33 -0.39 -0.91 16 9 C 0.11 1.12 6.30 -83.75 -0.53 0.59 16 10 N -0.65 -7.39 5.32 -10.31 -0.05 -7.45 16 11 C 0.51 7.70 7.73 -11.64 -0.09 7.61 16 12 O -0.50 -8.33 13.88 5.47 0.08 -8.25 16 13 C 0.49 9.14 7.89 -11.64 -0.09 9.04 16 14 O -0.54 -11.00 16.48 5.49 0.09 -10.91 16 15 N -0.67 -13.75 5.54 -61.95 -0.34 -14.09 16 16 C 0.25 6.18 5.43 -5.19 -0.03 6.15 16 17 C -0.55 -14.44 9.28 -34.44 -0.32 -14.76 16 18 H 0.07 1.67 7.60 -52.49 -0.40 1.27 16 19 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.88 -25.12 13.29 55.43 0.74 -24.38 16 21 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 C -0.04 -0.42 8.40 -38.96 -0.33 -0.75 16 26 C -0.05 -0.51 5.75 -106.72 -0.61 -1.13 16 27 C 0.27 3.58 14.86 -22.47 -0.33 3.24 16 28 N -0.42 -6.38 18.54 41.84 0.78 -5.61 16 29 H 0.07 0.32 8.01 -51.93 -0.42 -0.10 16 30 H 0.08 0.20 7.87 -51.93 -0.41 -0.21 16 31 H 0.08 0.39 4.73 -51.93 -0.25 0.14 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.36 8.14 -51.94 -0.42 -0.06 16 35 H 0.09 0.45 4.46 -51.93 -0.23 0.22 16 36 H 0.08 0.23 7.93 -51.93 -0.41 -0.18 16 37 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 38 H 0.16 0.72 3.56 -52.49 -0.19 0.54 16 39 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.43 4.10 8.30 -40.82 -0.34 3.76 16 41 H 0.40 7.74 7.79 -40.82 -0.32 7.42 16 42 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.16 2.05 6.18 -52.49 -0.32 1.73 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -32.09 383.63 -5.96 -38.05 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.37 Total: 4.92 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -2.46 Total: 9.34 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 1.11 Total: -51.53 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.01 Total: -22.09 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.09 -5.96 -38.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453736859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.580 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds