Wall clock time and date at job start Wed Apr 1 2020 03:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46968 * 2 1 4 4 C 1.52998 * 109.47258 * 239.99422 * 2 1 3 5 5 O 1.42904 * 109.46996 * 119.99344 * 2 1 3 6 6 C 1.35761 * 116.99615 * 63.01187 * 5 2 1 7 7 C 1.38661 * 120.07400 * 355.45643 * 6 5 2 8 8 C 1.38007 * 120.17237 * 179.97438 * 7 6 5 9 9 C 1.39142 * 120.32272 * 0.02562 * 8 7 6 10 10 N 1.39898 * 119.93489 * 180.02562 * 9 8 7 11 11 C 1.34775 * 119.99825 * 145.01302 * 10 9 8 12 12 O 1.21377 * 120.00420 * 5.07351 * 11 10 9 13 13 C 1.49341 * 119.99337 * 185.07140 * 11 10 9 14 14 O 1.21360 * 120.00200 * 0.02562 * 13 11 10 15 15 N 1.34776 * 119.99878 * 180.02562 * 13 11 10 16 16 C 1.46496 * 120.00028 * 180.02562 * 15 13 11 17 17 C 1.50707 * 109.46922 * 179.97438 * 16 15 13 18 18 H 1.07996 * 119.99977 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99784 * 179.97438 * 17 16 15 20 20 N 1.31522 * 120.00166 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00092 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47090 * 90.00067 * 21 19 17 23 23 H 1.48500 * 109.47291 * 210.00370 * 21 19 17 24 24 H 1.48506 * 109.47005 * 330.00548 * 21 19 17 25 25 C 1.38498 * 120.13857 * 0.03833 * 9 8 7 26 26 C 1.39649 * 119.82456 * 359.93467 * 25 9 8 27 27 C 1.43201 * 120.15917 * 180.31733 * 26 25 9 28 28 N 4.92540 * 116.77769 * 111.67902 * 2 1 3 29 29 H 1.09007 * 109.46984 * 317.72270 * 1 2 3 30 30 H 1.09000 * 109.46998 * 77.72317 * 1 2 3 31 31 H 1.08998 * 109.47004 * 197.72887 * 1 2 3 32 32 H 1.09002 * 109.46847 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46801 * 299.99403 * 3 2 1 34 34 H 1.08987 * 109.47514 * 59.99843 * 3 2 1 35 35 H 1.08998 * 109.47180 * 289.73880 * 4 2 1 36 36 H 1.09003 * 109.46323 * 49.73569 * 4 2 1 37 37 H 1.09001 * 109.47221 * 169.73582 * 4 2 1 38 38 H 1.07997 * 119.90870 * 359.97438 * 7 6 5 39 39 H 1.08001 * 119.84053 * 180.02562 * 8 7 6 40 40 H 0.97005 * 119.99372 * 325.01939 * 10 9 8 41 41 H 0.97008 * 120.00086 * 359.97438 * 15 13 11 42 42 H 1.08992 * 109.47246 * 299.99643 * 16 15 13 43 43 H 1.08995 * 109.47098 * 60.00584 * 16 15 13 44 44 H 0.96998 * 119.99641 * 179.97438 * 20 19 17 45 45 H 1.07998 * 120.08660 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 2.0063 -0.6735 1.1669 6 6 1.6942 -1.9890 1.2897 7 6 0.8670 -2.5969 0.3575 8 6 0.5487 -3.9342 0.4801 9 6 1.0541 -4.6823 1.5388 10 7 0.7267 -6.0375 1.6549 11 6 1.6335 -6.9110 2.1359 12 8 2.7001 -6.5100 2.5540 13 6 1.3257 -8.3722 2.1543 14 8 0.2594 -8.7731 1.7358 15 7 2.2322 -9.2457 2.6357 16 6 1.9306 -10.6792 2.6532 17 6 3.0998 -11.4315 3.2348 18 1 3.9793 -10.8953 3.5593 19 6 3.0461 -12.8040 3.3536 20 7 1.9748 -13.4569 2.9589 21 14 4.4950 -13.7365 4.0752 22 1 4.3268 -13.8512 5.5462 23 1 4.5577 -15.0941 3.4767 24 1 5.7526 -13.0052 3.7764 25 6 1.8805 -4.0882 2.4781 26 6 2.2068 -2.7355 2.3596 27 6 3.0660 -2.1156 3.3229 28 7 3.7491 -1.6244 4.0862 29 1 -0.3633 0.7604 0.6914 30 1 -0.3633 0.2185 -1.0042 31 1 -0.3633 -0.9788 0.3129 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9564 0.8898 35 1 1.8339 -1.7881 -1.1623 36 1 1.5349 -0.3242 -2.1296 37 1 3.1146 -0.5655 -1.3455 38 1 0.4707 -2.0222 -0.4666 39 1 -0.0957 -4.4023 -0.2493 40 1 -0.1529 -6.3484 1.3892 41 1 3.0847 -8.9253 2.9698 42 1 1.0445 -10.8566 3.2626 43 1 1.7469 -11.0243 1.6358 44 1 1.9373 -14.4226 3.0422 45 1 2.2726 -4.6698 3.2993 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453736859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:44 Heat of formation + Delta-G solvation = -54.824108 kcal Electronic energy + Delta-G solvation = -28899.133830 eV Core-core repulsion = 24689.388082 eV Total energy + Delta-G solvation = -4209.745748 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.35676 -41.67563 -40.02390 -38.85394 -37.66803 -36.52258 -35.70508 -34.93655 -34.32577 -32.52262 -30.64601 -29.63605 -28.29479 -28.22782 -26.40044 -25.14484 -24.55463 -23.34145 -21.66557 -21.31729 -20.52900 -19.84168 -18.42090 -18.30154 -17.74554 -17.37949 -17.01335 -16.90761 -16.67791 -16.46470 -15.96822 -15.89404 -15.70539 -15.24007 -15.08260 -14.86661 -14.44073 -14.37015 -14.27862 -14.06646 -13.99408 -13.89193 -13.64090 -13.33600 -13.14799 -13.07813 -12.99064 -12.83369 -12.73548 -12.68174 -12.61139 -12.22071 -12.00607 -11.84036 -11.52045 -11.43733 -10.98811 -10.83418 -10.66534 -10.08309 -10.02668 -8.91598 -8.30842 -6.46263 -0.34840 -0.04475 0.49360 1.25954 1.45056 1.45328 1.56789 1.58808 1.80222 2.03165 2.14995 2.36290 2.65302 2.72600 2.87349 3.04646 3.46668 3.64857 3.77641 3.84156 3.93679 3.98056 4.05819 4.24387 4.42091 4.63946 4.65513 4.71964 4.78541 4.86938 4.93243 4.95947 4.99933 5.04122 5.06007 5.13153 5.20175 5.22323 5.28504 5.33980 5.37288 5.51281 5.58765 5.79377 5.96251 6.25807 6.43908 6.51054 6.59566 6.76894 7.02104 7.26703 8.80526 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022140 B = 0.001939 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.397418 B =14435.354745 C =15199.283495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.095 3.905 3 C -0.140 4.140 4 C -0.204 4.204 5 O -0.321 6.321 6 C 0.179 3.821 7 C -0.193 4.193 8 C -0.044 4.044 9 C 0.091 3.909 10 N -0.626 5.626 11 C 0.520 3.480 12 O -0.520 6.520 13 C 0.495 3.505 14 O -0.555 6.555 15 N -0.675 5.675 16 C 0.263 3.737 17 C -0.562 4.562 18 H 0.078 0.922 19 C 0.012 3.988 20 N -0.923 5.923 21 Si 0.979 3.021 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.261 1.261 25 C -0.044 4.044 26 C -0.070 4.070 27 C 0.282 3.718 28 N -0.465 5.465 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.198 0.802 39 H 0.179 0.821 40 H 0.436 0.564 41 H 0.412 0.588 42 H 0.007 0.993 43 H 0.007 0.993 44 H 0.270 0.730 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.522 29.072 -12.164 32.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.059 3.941 3 C -0.197 4.197 4 C -0.260 4.260 5 O -0.234 6.234 6 C 0.129 3.871 7 C -0.211 4.211 8 C -0.065 4.065 9 C -0.003 4.003 10 N -0.274 5.274 11 C 0.302 3.698 12 O -0.396 6.396 13 C 0.275 3.725 14 O -0.434 6.434 15 N -0.325 5.325 16 C 0.141 3.859 17 C -0.600 4.600 18 H 0.096 0.904 19 C -0.189 4.189 20 N -0.561 5.561 21 Si 0.803 3.197 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.185 1.185 25 C -0.067 4.067 26 C -0.075 4.075 27 C -0.032 4.032 28 N -0.142 5.142 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.077 0.923 38 H 0.214 0.786 39 H 0.197 0.803 40 H 0.277 0.723 41 H 0.249 0.751 42 H 0.024 0.976 43 H 0.025 0.975 44 H 0.079 0.921 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.420 29.724 -10.884 32.114 hybrid contribution 0.410 -1.135 0.410 1.275 sum -5.010 28.589 -10.473 30.856 Atomic orbital electron populations 1.22916 0.92807 1.04654 1.05207 1.22282 0.95470 0.93293 0.83081 1.21879 1.01732 0.92073 1.04006 1.22977 1.02714 1.02874 0.97452 1.86192 1.72888 1.19078 1.45252 1.18901 0.92145 0.83591 0.92448 1.21984 1.01517 0.95841 1.01765 1.21397 0.97736 0.93141 0.94189 1.17526 1.02710 0.82984 0.97029 1.42910 1.17503 1.04900 1.62102 1.20083 0.84216 0.86977 0.78558 1.90757 1.24722 1.79362 1.44736 1.20171 0.84906 0.87380 0.80078 1.90721 1.24621 1.80143 1.47952 1.46172 1.19151 1.08323 1.58827 1.18825 0.96405 0.74627 0.96006 1.21571 1.02267 0.92812 1.43327 0.90410 1.25915 0.99332 0.98407 0.95247 1.70090 1.29921 1.09138 1.46980 0.85233 0.78627 0.77464 0.78387 1.19732 1.20593 1.18537 1.21027 0.96243 0.91185 0.98246 1.15104 1.04270 0.92658 0.95500 1.25662 0.92522 0.92437 0.92573 1.81186 1.11710 1.09703 1.11561 0.91674 0.88001 0.89634 0.92540 0.87691 0.92139 0.89497 0.87949 0.92317 0.78587 0.80331 0.72326 0.75138 0.97553 0.97457 0.92062 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.98 8.11 71.98 0.58 -0.39 16 2 C 0.10 0.87 1.11 -10.79 -0.01 0.85 16 3 C -0.14 -1.13 8.75 71.98 0.63 -0.50 16 4 C -0.20 -1.28 8.07 71.98 0.58 -0.70 16 5 O -0.32 -5.44 9.22 -90.88 -0.84 -6.28 16 6 C 0.18 2.96 6.08 22.84 0.14 3.09 16 7 C -0.19 -1.86 5.73 22.32 0.13 -1.74 16 8 C -0.04 -0.45 9.95 22.43 0.22 -0.23 16 9 C 0.09 1.66 6.30 38.13 0.24 1.90 16 10 N -0.63 -13.25 5.32 -304.88 -1.62 -14.87 16 11 C 0.52 15.52 7.73 87.24 0.67 16.19 16 12 O -0.52 -17.25 13.88 -3.33 -0.05 -17.30 16 13 C 0.49 18.57 7.89 87.24 0.69 19.26 16 14 O -0.55 -23.01 16.48 -3.28 -0.05 -23.06 16 15 N -0.67 -28.42 5.54 -468.27 -2.59 -31.01 16 16 C 0.26 13.70 5.43 85.64 0.46 14.16 16 17 C -0.56 -30.08 9.28 25.60 0.24 -29.84 16 18 H 0.08 3.89 7.60 -2.91 -0.02 3.87 16 19 C 0.01 0.63 5.46 84.65 0.46 1.09 16 20 N -0.92 -53.43 13.29 21.45 0.28 -53.14 16 21 Si 0.98 42.03 29.54 68.60 2.03 44.06 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 25 C -0.04 -1.01 8.40 22.67 0.19 -0.82 16 26 C -0.07 -1.55 5.75 -21.22 -0.12 -1.67 16 27 C 0.28 7.85 14.86 88.33 1.31 9.16 16 28 N -0.46 -14.94 18.54 19.00 0.35 -14.59 16 29 H 0.06 0.41 8.01 -2.38 -0.02 0.39 16 30 H 0.10 0.00 7.87 -2.39 -0.02 -0.01 16 31 H 0.09 0.41 4.73 -2.39 -0.01 0.40 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.09 0.54 4.46 -2.39 -0.01 0.53 16 36 H 0.10 0.13 7.93 -2.39 -0.02 0.11 16 37 H 0.06 0.52 8.11 -2.39 -0.02 0.50 16 38 H 0.20 0.70 3.56 -2.91 -0.01 0.69 16 39 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 40 H 0.44 7.41 8.30 -92.70 -0.77 6.65 16 41 H 0.41 16.04 7.79 -92.70 -0.72 15.32 16 42 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.14 3.68 6.18 -2.91 -0.02 3.66 16 Total: -1.00 -72.97 383.63 3.52 -69.45 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -0.41 Total: 16.93 kcal Atomic # 6 Polarization: 23.39 SS G_CDS: 6.42 Total: 29.82 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -3.58 Total: -113.62 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -0.94 Total: -46.64 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -72.97 3.52 -69.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453736859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.628 kcal (2) G-P(sol) polarization free energy of solvation -72.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds