Wall clock time and date at job start Wed Apr 1 2020 02:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47033 * 2 1 4 4 C 1.50708 * 109.46707 * 180.02562 * 3 2 1 5 5 N 1.30255 * 125.61924 * 90.02433 * 4 3 2 6 6 C 1.34476 * 108.69679 * 179.97438 * 5 4 3 7 7 C 1.50703 * 126.16305 * 179.97438 * 6 5 4 8 8 C 1.34336 * 107.67265 * 0.02562 * 6 5 4 9 9 C 1.50692 * 126.44372 * 179.97438 * 8 6 5 10 10 N 1.46501 * 109.47270 * 89.99895 * 9 8 6 11 11 S 1.65601 * 120.00152 * 165.49285 * 10 9 8 12 12 O 1.42093 * 106.40239 * 178.71465 * 11 10 9 13 13 O 1.42101 * 106.39978 * 311.63974 * 11 10 9 14 14 N 1.65604 * 107.21974 * 65.17756 * 11 10 9 15 15 C 1.46503 * 119.99756 * 83.61501 * 14 11 10 16 16 C 1.53005 * 109.46825 * 95.00478 * 15 14 11 17 17 C 1.46496 * 120.00050 * 263.62254 * 14 11 10 18 18 C 1.50694 * 109.47710 * 100.06599 * 17 14 11 19 19 H 1.08010 * 119.99935 * 4.23219 * 18 17 14 20 20 C 1.37877 * 120.00489 * 184.23443 * 18 17 14 21 21 N 1.31512 * 119.99700 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00144 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47550 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47436 * 119.99854 * 22 20 18 25 25 H 1.48501 * 109.46997 * 239.99842 * 22 20 18 26 26 O 1.33965 * 125.61456 * 269.97700 * 4 3 2 27 27 H 1.09000 * 109.46664 * 60.00105 * 1 2 3 28 28 H 1.08993 * 109.47199 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46853 * 300.00639 * 1 2 3 30 30 H 1.08996 * 109.46853 * 239.99361 * 2 1 3 31 31 H 1.09000 * 109.46664 * 119.99895 * 2 1 3 32 32 H 1.08993 * 109.47382 * 60.00181 * 3 2 1 33 33 H 1.08994 * 109.46914 * 299.99356 * 3 2 1 34 34 H 1.08999 * 109.46946 * 89.97965 * 7 6 5 35 35 H 1.09005 * 109.47065 * 209.97323 * 7 6 5 36 36 H 1.08996 * 109.47233 * 329.97511 * 7 6 5 37 37 H 1.09001 * 109.47022 * 209.99471 * 9 8 6 38 38 H 1.09006 * 109.47485 * 329.99433 * 9 8 6 39 39 H 0.96994 * 119.99967 * 345.48473 * 10 9 8 40 40 H 1.09006 * 109.46863 * 215.00247 * 15 14 11 41 41 H 1.09000 * 109.47524 * 335.00251 * 15 14 11 42 42 H 1.08994 * 109.46734 * 179.97438 * 16 15 14 43 43 H 1.08995 * 109.46528 * 299.99623 * 16 15 14 44 44 H 1.09000 * 109.47255 * 59.99608 * 16 15 14 45 45 H 1.09007 * 109.46912 * 220.06590 * 17 14 11 46 46 H 1.09006 * 109.47203 * 340.06534 * 17 14 11 47 47 H 0.97002 * 119.99864 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 7 4.3053 1.4430 -1.0598 6 6 5.5920 1.4432 -0.6689 7 6 6.7965 1.4433 -1.5746 8 6 5.6101 1.4422 0.6743 9 6 6.8343 1.4416 1.5530 10 7 7.2311 2.8226 1.8388 11 16 8.3093 3.1395 3.0551 12 8 8.5076 4.5466 3.0590 13 8 7.8572 2.4151 4.1909 14 7 9.7564 2.4647 2.6157 15 6 10.6665 3.1954 1.7302 16 6 11.6934 3.9571 2.5706 17 6 10.1263 1.1370 3.1123 18 6 9.8559 0.1081 2.0450 19 1 9.5140 0.4195 1.0689 20 6 10.0450 -1.2308 2.3144 21 7 10.4618 -1.6100 3.5027 22 14 9.7106 -2.5061 0.9911 23 1 9.2550 -1.8261 -0.2479 24 1 10.9551 -3.2661 0.7101 25 1 8.6553 -3.4401 1.4592 26 8 4.3277 1.4426 1.0881 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9562 -0.8900 34 1 7.0865 2.4710 -1.7933 35 1 7.6220 0.9301 -1.0813 36 1 6.5523 0.9290 -2.5040 37 1 6.6105 0.9271 2.4876 38 1 7.6485 0.9280 1.0416 39 1 6.8624 3.5513 1.3155 40 1 11.1819 2.4908 1.0775 41 1 10.0967 3.9009 1.1255 42 1 12.3708 4.5003 1.9119 43 1 11.1779 4.6616 3.2233 44 1 12.2632 3.2516 3.1754 45 1 11.1861 1.1266 3.3668 46 1 9.5372 0.9037 3.9993 47 1 10.5952 -2.5519 3.6921 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490610862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:40 Heat of formation + Delta-G solvation = -76.180715 kcal Electronic energy + Delta-G solvation = -29557.657639 eV Core-core repulsion = 25482.429751 eV Total energy + Delta-G solvation = -4075.227888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.32342 -36.74524 -36.13972 -35.86049 -35.30001 -35.26839 -34.77620 -32.78022 -31.40625 -29.97179 -28.51216 -27.71800 -26.68339 -24.21790 -23.21858 -22.29559 -21.75071 -21.42600 -20.51997 -18.98298 -17.43629 -17.06013 -16.79739 -16.51348 -16.27379 -15.71474 -15.43990 -15.21543 -14.75051 -14.53393 -13.97150 -13.78413 -13.44899 -13.38509 -13.29526 -13.18828 -12.94890 -12.57776 -12.54002 -12.18297 -12.11003 -12.04210 -11.86174 -11.73240 -11.66669 -11.60036 -11.47523 -11.34969 -11.12484 -11.04038 -10.98347 -10.81518 -10.59259 -10.48449 -10.40377 -10.08317 -9.87215 -9.24621 -8.59103 -8.57147 -8.11599 -6.18685 -4.26404 1.07508 1.53099 2.62639 2.66834 3.19001 3.27383 3.28838 3.51075 3.88615 4.09856 4.28644 4.59802 4.66638 4.74810 4.87169 4.96114 5.06460 5.15161 5.19674 5.31222 5.34792 5.39964 5.44490 5.48390 5.65843 5.69407 5.72730 5.76351 5.81773 5.85675 5.93114 5.96451 6.01155 6.10405 6.13893 6.19283 6.30499 6.41864 6.63827 6.67432 7.13633 7.31715 7.37427 7.61673 7.76729 7.77852 8.07726 8.77901 9.40019 10.89070 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009916 B = 0.004017 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.955389 B = 6969.324862 C = 8477.412922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.021 4.021 4 C 0.188 3.812 5 N -0.480 5.480 6 C 0.003 3.997 7 C -0.075 4.075 8 C -0.050 4.050 9 C 0.206 3.794 10 N -1.129 6.129 11 S 2.785 3.215 12 O -0.995 6.995 13 O -0.975 6.975 14 N -0.990 5.990 15 C 0.131 3.869 16 C -0.171 4.171 17 C 0.241 3.759 18 C -0.544 4.544 19 H 0.064 0.936 20 C 0.068 3.932 21 N -0.884 5.884 22 Si 0.887 3.113 23 H -0.270 1.270 24 H -0.282 1.282 25 H -0.282 1.282 26 O -0.194 6.194 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.121 0.879 39 H 0.409 0.591 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.036 0.964 46 H 0.057 0.943 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.456 6.162 -8.344 15.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.059 4.059 4 C -0.019 4.019 5 N -0.210 5.210 6 C -0.118 4.118 7 C -0.132 4.132 8 C -0.104 4.104 9 C 0.080 3.920 10 N -0.887 5.887 11 S 2.793 3.207 12 O -0.979 6.979 13 O -0.958 6.958 14 N -0.832 5.832 15 C 0.005 3.995 16 C -0.230 4.230 17 C 0.119 3.881 18 C -0.583 4.583 19 H 0.082 0.918 20 C -0.136 4.136 21 N -0.521 5.521 22 Si 0.714 3.286 23 H -0.195 1.195 24 H -0.208 1.208 25 H -0.208 1.208 26 O -0.080 6.080 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.138 0.862 39 H 0.241 0.759 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.054 0.946 46 H 0.075 0.925 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.739 6.302 -7.846 15.462 hybrid contribution 0.058 -0.805 -0.613 1.014 sum -11.680 5.497 -8.459 15.434 Atomic orbital electron populations 1.21749 0.94680 1.02242 1.02096 1.21551 0.96390 0.94836 1.03385 1.20141 0.81257 0.99446 1.05033 1.26190 0.96098 1.00678 0.78953 1.70345 1.01597 1.18852 1.30256 1.21587 0.93344 1.04720 0.92143 1.20202 0.92096 1.03006 0.97947 1.23337 0.83474 1.08636 0.94923 1.19789 0.89403 0.83321 0.99462 1.56176 1.62898 1.13134 1.56521 1.01814 0.72949 0.72532 0.73432 1.93561 1.86069 1.31251 1.87034 1.93588 1.80577 1.73912 1.47772 1.57737 1.32630 1.30475 1.62399 1.20975 0.91984 0.94431 0.92128 1.22209 0.99453 1.00432 1.00904 1.19256 0.97809 0.75525 0.95484 1.21539 1.46823 0.91133 0.98833 0.91772 1.24941 0.94851 0.98465 0.95365 1.69935 1.44984 1.16726 1.20496 0.86624 0.78192 0.81837 0.81915 1.19462 1.20820 1.20824 1.84421 1.16628 1.69522 1.37444 0.92376 0.92192 0.92378 0.91024 0.91251 0.88936 0.87791 0.90609 0.89819 0.90737 0.88333 0.86182 0.75898 0.90003 0.92139 0.92417 0.92473 0.92061 0.94575 0.92525 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.12 -1.06 5.92 -26.73 -0.16 -1.21 16 3 C -0.02 -0.19 5.84 -27.88 -0.16 -0.35 16 4 C 0.19 2.60 7.60 -12.94 -0.10 2.50 16 5 N -0.48 -7.33 11.29 -7.35 -0.08 -7.42 16 6 C 0.00 0.05 7.11 -82.81 -0.59 -0.54 16 7 C -0.08 -0.97 10.22 36.01 0.37 -0.60 16 8 C -0.05 -0.80 6.78 -35.69 -0.24 -1.04 16 9 C 0.21 3.48 6.54 -5.20 -0.03 3.45 16 10 N -1.13 -18.12 6.05 -11.66 -0.07 -18.19 16 11 S 2.78 53.15 6.07 -107.50 -0.65 52.50 16 12 O -1.00 -19.69 17.17 -57.17 -0.98 -20.67 16 13 O -0.98 -22.16 16.01 -57.17 -0.92 -23.08 16 14 N -0.99 -19.08 2.84 -115.66 -0.33 -19.41 16 15 C 0.13 2.13 6.02 -4.04 -0.02 2.10 16 16 C -0.17 -2.59 10.24 37.16 0.38 -2.21 16 17 C 0.24 5.61 5.46 -5.20 -0.03 5.58 16 18 C -0.54 -13.06 8.51 -34.44 -0.29 -13.35 16 19 H 0.06 1.44 6.46 -52.48 -0.34 1.10 16 20 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.88 -24.21 13.29 55.43 0.74 -23.47 16 22 Si 0.89 19.59 29.54 -169.99 -5.02 14.57 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 O -0.19 -3.08 10.78 5.37 0.06 -3.02 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.10 7.16 -51.93 -0.37 0.72 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.81 7.76 -51.93 -0.40 1.41 16 38 H 0.12 2.07 4.88 -51.93 -0.25 1.82 16 39 H 0.41 5.64 8.64 -34.47 -0.30 5.34 16 40 H 0.08 1.31 8.09 -51.93 -0.42 0.89 16 41 H 0.06 0.86 7.78 -51.93 -0.40 0.45 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.91 7.96 -51.93 -0.41 0.49 16 44 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 45 H 0.04 0.88 8.10 -51.93 -0.42 0.46 16 46 H 0.06 1.48 6.77 -51.93 -0.35 1.12 16 47 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 401.39 15.07 6.05 6.05 Total: -1.00 -31.55 401.39 -9.28 -40.83 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.46 Total: 5.92 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -0.61 Total: -4.63 kcal Atomic # 7 Polarization: -68.74 SS G_CDS: 0.25 Total: -68.48 kcal Atomic # 8 Polarization: -44.92 SS G_CDS: -1.84 Total: -46.76 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Atomic # 16 Polarization: 53.15 SS G_CDS: -0.65 Total: 52.50 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.55 -9.28 -40.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490610862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.351 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds