Wall clock time and date at job start Wed Apr 1 2020 02:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47033 * 2 1 4 4 C 1.50708 * 109.46707 * 180.02562 * 3 2 1 5 5 N 1.30255 * 125.61924 * 90.02433 * 4 3 2 6 6 C 1.34476 * 108.69679 * 179.97438 * 5 4 3 7 7 C 1.50703 * 126.16305 * 179.97438 * 6 5 4 8 8 C 1.34336 * 107.67265 * 0.02562 * 6 5 4 9 9 C 1.50692 * 126.44372 * 179.97438 * 8 6 5 10 10 N 1.46501 * 109.47270 * 89.99895 * 9 8 6 11 11 S 1.65601 * 120.00152 * 165.49285 * 10 9 8 12 12 O 1.42093 * 106.40239 * 178.71465 * 11 10 9 13 13 O 1.42101 * 106.39978 * 311.63974 * 11 10 9 14 14 N 1.65604 * 107.21974 * 65.17756 * 11 10 9 15 15 C 1.46503 * 119.99756 * 83.61501 * 14 11 10 16 16 C 1.53005 * 109.46825 * 95.00478 * 15 14 11 17 17 C 1.46496 * 120.00050 * 263.62254 * 14 11 10 18 18 C 1.50694 * 109.47710 * 100.06599 * 17 14 11 19 19 H 1.08010 * 119.99935 * 4.23219 * 18 17 14 20 20 C 1.37877 * 120.00489 * 184.23443 * 18 17 14 21 21 N 1.31512 * 119.99700 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00144 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47550 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47436 * 119.99854 * 22 20 18 25 25 H 1.48501 * 109.46997 * 239.99842 * 22 20 18 26 26 O 1.33965 * 125.61456 * 269.97700 * 4 3 2 27 27 H 1.09000 * 109.46664 * 60.00105 * 1 2 3 28 28 H 1.08993 * 109.47199 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46853 * 300.00639 * 1 2 3 30 30 H 1.08996 * 109.46853 * 239.99361 * 2 1 3 31 31 H 1.09000 * 109.46664 * 119.99895 * 2 1 3 32 32 H 1.08993 * 109.47382 * 60.00181 * 3 2 1 33 33 H 1.08994 * 109.46914 * 299.99356 * 3 2 1 34 34 H 1.08999 * 109.46946 * 89.97965 * 7 6 5 35 35 H 1.09005 * 109.47065 * 209.97323 * 7 6 5 36 36 H 1.08996 * 109.47233 * 329.97511 * 7 6 5 37 37 H 1.09001 * 109.47022 * 209.99471 * 9 8 6 38 38 H 1.09006 * 109.47485 * 329.99433 * 9 8 6 39 39 H 0.96994 * 119.99967 * 345.48473 * 10 9 8 40 40 H 1.09006 * 109.46863 * 215.00247 * 15 14 11 41 41 H 1.09000 * 109.47524 * 335.00251 * 15 14 11 42 42 H 1.08994 * 109.46734 * 179.97438 * 16 15 14 43 43 H 1.08995 * 109.46528 * 299.99623 * 16 15 14 44 44 H 1.09000 * 109.47255 * 59.99608 * 16 15 14 45 45 H 1.09007 * 109.46912 * 220.06590 * 17 14 11 46 46 H 1.09006 * 109.47203 * 340.06534 * 17 14 11 47 47 H 0.97002 * 119.99864 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 7 4.3053 1.4430 -1.0598 6 6 5.5920 1.4432 -0.6689 7 6 6.7965 1.4433 -1.5746 8 6 5.6101 1.4422 0.6743 9 6 6.8343 1.4416 1.5530 10 7 7.2311 2.8226 1.8388 11 16 8.3093 3.1395 3.0551 12 8 8.5076 4.5466 3.0590 13 8 7.8572 2.4151 4.1909 14 7 9.7564 2.4647 2.6157 15 6 10.6665 3.1954 1.7302 16 6 11.6934 3.9571 2.5706 17 6 10.1263 1.1370 3.1123 18 6 9.8559 0.1081 2.0450 19 1 9.5140 0.4195 1.0689 20 6 10.0450 -1.2308 2.3144 21 7 10.4618 -1.6100 3.5027 22 14 9.7106 -2.5061 0.9911 23 1 9.2550 -1.8261 -0.2479 24 1 10.9551 -3.2661 0.7101 25 1 8.6553 -3.4401 1.4592 26 8 4.3277 1.4426 1.0881 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9562 -0.8900 34 1 7.0865 2.4710 -1.7933 35 1 7.6220 0.9301 -1.0813 36 1 6.5523 0.9290 -2.5040 37 1 6.6105 0.9271 2.4876 38 1 7.6485 0.9280 1.0416 39 1 6.8624 3.5513 1.3155 40 1 11.1819 2.4908 1.0775 41 1 10.0967 3.9009 1.1255 42 1 12.3708 4.5003 1.9119 43 1 11.1779 4.6616 3.2233 44 1 12.2632 3.2516 3.1754 45 1 11.1861 1.1266 3.3668 46 1 9.5372 0.9037 3.9993 47 1 10.5952 -2.5519 3.6921 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490610862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:39 Heat of formation + Delta-G solvation = -99.788859 kcal Electronic energy + Delta-G solvation = -29558.681365 eV Core-core repulsion = 25482.429751 eV Total energy + Delta-G solvation = -4076.251614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.47112 -38.37955 -37.69227 -36.99454 -36.93205 -36.36179 -35.83483 -34.64838 -32.46217 -31.48328 -29.38783 -28.85151 -28.44041 -25.33942 -24.92472 -23.26804 -23.18565 -22.41014 -21.58060 -20.49624 -18.93518 -18.59032 -18.41708 -17.99773 -17.49310 -17.17479 -16.67190 -16.31892 -16.10571 -15.74183 -15.43771 -14.99773 -14.75345 -14.69673 -14.48251 -14.23962 -14.14100 -13.81325 -13.74997 -13.62847 -13.35003 -13.26288 -13.21953 -13.18957 -13.04031 -12.86678 -12.72428 -12.66312 -12.62957 -12.29686 -12.27364 -12.05137 -11.86945 -11.72028 -11.66414 -11.60543 -11.54003 -10.68002 -10.54284 -9.84115 -9.66172 -8.13551 -6.26489 -0.42966 0.31315 1.44195 1.47916 1.49407 1.55997 1.56957 2.02537 2.44389 2.56989 2.90178 3.19955 3.37513 3.61612 3.75717 3.95232 3.99207 4.00074 4.11519 4.13154 4.35937 4.47639 4.51652 4.56986 4.65366 4.66410 4.72323 4.75463 4.78409 4.83556 4.88984 4.96241 5.03934 5.04440 5.19280 5.20278 5.22500 5.33876 5.38050 5.41082 5.46729 5.56210 5.80785 5.85892 6.07515 6.14789 6.63271 6.86406 7.43757 8.94984 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009916 B = 0.004017 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.955389 B = 6969.324862 C = 8477.412922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.021 4.021 4 C 0.197 3.803 5 N -0.500 5.500 6 C 0.008 3.992 7 C -0.077 4.077 8 C -0.076 4.076 9 C 0.214 3.786 10 N -1.113 6.113 11 S 2.801 3.199 12 O -0.999 6.999 13 O -1.015 7.015 14 N -0.991 5.991 15 C 0.121 3.879 16 C -0.169 4.169 17 C 0.256 3.744 18 C -0.536 4.536 19 H 0.083 0.917 20 C 0.016 3.984 21 N -0.927 5.927 22 Si 0.945 3.055 23 H -0.247 1.247 24 H -0.284 1.284 25 H -0.290 1.290 26 O -0.210 6.210 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.422 0.578 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.047 0.953 45 H 0.020 0.980 46 H 0.022 0.978 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.634 7.067 -11.006 18.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.059 4.059 4 C -0.010 4.010 5 N -0.230 5.230 6 C -0.113 4.113 7 C -0.134 4.134 8 C -0.129 4.129 9 C 0.088 3.912 10 N -0.874 5.874 11 S 2.809 3.191 12 O -0.983 6.983 13 O -0.999 6.999 14 N -0.833 5.833 15 C -0.004 4.004 16 C -0.228 4.228 17 C 0.132 3.868 18 C -0.575 4.575 19 H 0.101 0.899 20 C -0.184 4.184 21 N -0.567 5.567 22 Si 0.770 3.230 23 H -0.170 1.170 24 H -0.210 1.210 25 H -0.216 1.216 26 O -0.097 6.097 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.129 0.871 33 H 0.141 0.859 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.257 0.743 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.038 0.962 46 H 0.040 0.960 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.911 7.254 -10.542 18.179 hybrid contribution 0.350 -1.012 0.195 1.088 sum -12.561 6.242 -10.348 17.431 Atomic orbital electron populations 1.21722 0.92712 1.02782 1.03065 1.21518 0.97996 0.94054 1.02280 1.20471 0.78308 1.00287 1.06856 1.27215 0.97566 0.98104 0.78149 1.70410 1.01690 1.20220 1.30720 1.21998 0.94201 1.03034 0.92086 1.20320 0.90969 1.04334 0.97739 1.23103 0.83385 1.11371 0.95080 1.19563 0.90121 0.83040 0.98505 1.55789 1.62133 1.13566 1.55953 1.01156 0.72910 0.71917 0.73120 1.93547 1.86266 1.31287 1.87209 1.93540 1.81324 1.74763 1.50248 1.57599 1.33446 1.29209 1.63041 1.21293 0.92162 0.94872 0.92067 1.22203 0.99526 1.00019 1.01102 1.18813 0.96099 0.77450 0.94447 1.21876 1.45127 0.91071 0.99464 0.89863 1.25730 0.94960 1.00664 0.97058 1.70072 1.47027 1.16946 1.22678 0.85695 0.77571 0.79362 0.80327 1.17018 1.20976 1.21640 1.84413 1.16816 1.70029 1.38457 0.91250 0.91919 0.91564 0.92018 0.92531 0.87131 0.85868 0.88712 0.90040 0.89837 0.90600 0.86405 0.74289 0.89479 0.89461 0.89164 0.93485 0.93422 0.96184 0.95994 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.81 16 2 C -0.12 -1.86 5.92 30.60 0.18 -1.68 16 3 C -0.02 -0.35 5.84 29.85 0.17 -0.18 16 4 C 0.20 5.16 7.60 88.34 0.67 5.83 16 5 N -0.50 -14.42 11.29 -291.97 -3.30 -17.72 16 6 C 0.01 0.22 7.11 41.26 0.29 0.52 16 7 C -0.08 -1.78 10.22 71.24 0.73 -1.05 16 8 C -0.08 -2.39 6.78 24.79 0.17 -2.22 16 9 C 0.21 7.18 6.54 85.63 0.56 7.74 16 10 N -1.11 -34.89 6.05 -190.79 -1.15 -36.05 16 11 S 2.80 106.75 6.07 -56.49 -0.34 106.40 16 12 O -1.00 -38.51 17.17 -128.00 -2.20 -40.70 16 13 O -1.02 -47.58 16.01 -128.00 -2.05 -49.63 16 14 N -0.99 -37.98 2.84 -519.82 -1.48 -39.46 16 15 C 0.12 3.72 6.02 86.38 0.52 4.24 16 16 C -0.17 -4.89 10.24 71.98 0.74 -4.16 16 17 C 0.26 12.16 5.46 85.63 0.47 12.63 16 18 C -0.54 -25.69 8.51 25.60 0.22 -25.47 16 19 H 0.08 3.59 6.46 -2.91 -0.02 3.58 16 20 C 0.02 0.80 5.46 84.66 0.46 1.27 16 21 N -0.93 -52.16 13.29 21.45 0.28 -51.87 16 22 Si 0.95 39.91 29.54 68.60 2.03 41.93 16 23 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 24 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 26 O -0.21 -6.54 10.78 -3.72 -0.04 -6.58 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 35 H 0.08 1.93 7.16 -2.38 -0.02 1.91 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 2.88 7.76 -2.39 -0.02 2.87 16 38 H 0.12 3.98 4.88 -2.38 -0.01 3.97 16 39 H 0.42 10.99 8.64 -96.75 -0.84 10.16 16 40 H 0.09 2.60 8.09 -2.38 -0.02 2.58 16 41 H 0.09 2.22 7.78 -2.39 -0.02 2.20 16 42 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.05 1.44 7.96 -2.39 -0.02 1.42 16 44 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 45 H 0.02 1.01 8.10 -2.38 -0.02 0.99 16 46 H 0.02 1.20 6.77 -2.38 -0.02 1.19 16 47 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -68.62 401.39 -2.21 -70.83 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.14 Total: 26.20 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 5.89 Total: -3.35 kcal Atomic # 7 Polarization: -139.46 SS G_CDS: -5.64 Total: -145.10 kcal Atomic # 8 Polarization: -92.63 SS G_CDS: -4.29 Total: -96.91 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.93 kcal Atomic # 16 Polarization: 106.75 SS G_CDS: -0.34 Total: 106.40 kcal Total: -68.62 -2.21 -70.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490610862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.961 kcal (2) G-P(sol) polarization free energy of solvation -68.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds