Wall clock time and date at job start Wed Apr 1 2020 03:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 H 1.08993 * 109.70734 * 72.57951 * 3 2 1 5 5 C 1.53294 * 109.67818 * 193.11935 * 3 2 1 6 6 O 1.42956 * 109.22633 * 67.42212 * 5 3 2 7 7 C 1.42963 * 114.16732 * 62.57832 * 6 5 3 8 8 C 1.53292 * 109.22130 * 297.41782 * 7 6 5 9 9 N 1.47150 * 109.67976 * 312.04425 * 3 2 1 10 10 C 1.34778 * 120.98389 * 110.79497 * 9 3 2 11 11 O 1.21586 * 119.99687 * 355.00734 * 10 9 3 12 12 N 1.34773 * 120.00118 * 175.00937 * 10 9 3 13 13 C 1.39586 * 120.00032 * 185.13953 * 12 10 9 14 14 N 1.32266 * 119.72372 * 359.73053 * 13 12 10 15 15 C 1.31969 * 121.68793 * 179.70943 * 14 13 12 16 16 C 1.38076 * 120.95284 * 0.56162 * 15 14 13 17 17 C 1.38794 * 119.35256 * 359.72906 * 16 15 14 18 18 C 1.38782 * 118.44903 * 359.97438 * 17 16 15 19 19 O 1.35986 * 120.49842 * 180.02562 * 18 17 16 20 20 C 1.42906 * 116.99624 * 359.97438 * 19 18 17 21 21 C 1.52995 * 109.46681 * 179.97438 * 20 19 18 22 22 C 1.50702 * 109.46869 * 180.02562 * 21 20 19 23 23 H 1.08001 * 119.99930 * 0.02562 * 22 21 20 24 24 C 1.37879 * 120.00006 * 179.97438 * 22 21 20 25 25 N 1.31517 * 120.00084 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99936 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46946 * 90.00335 * 26 24 22 28 28 H 1.48497 * 109.47043 * 210.00212 * 26 24 22 29 29 H 1.48493 * 109.47252 * 330.00301 * 26 24 22 30 30 H 4.19109 * 14.98111 * 0.02562 * 4 2 1 31 31 H 1.08997 * 109.50745 * 187.34880 * 5 3 2 32 32 H 1.08998 * 109.50870 * 307.44453 * 5 3 2 33 33 H 1.08995 * 109.51113 * 57.34582 * 7 6 5 34 34 H 1.09005 * 109.51031 * 177.50030 * 7 6 5 35 35 H 1.09003 * 109.67818 * 172.02383 * 8 7 6 36 36 H 1.08999 * 109.68934 * 292.54091 * 8 7 6 37 37 H 0.97004 * 119.99939 * 5.13981 * 12 10 9 38 38 H 1.07999 * 119.52969 * 180.26487 * 15 14 13 39 39 H 1.07999 * 120.32560 * 179.74202 * 16 15 14 40 40 H 1.07996 * 120.77408 * 179.97438 * 17 16 15 41 41 H 1.08997 * 109.47074 * 300.00137 * 20 19 18 42 42 H 1.08997 * 109.46870 * 59.99936 * 20 19 18 43 43 H 1.08997 * 109.47500 * 299.99903 * 21 20 19 44 44 H 1.08997 * 109.47500 * 60.00348 * 21 20 19 45 45 H 0.97001 * 119.99746 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0137 -0.3064 -0.9790 5 6 3.1616 1.4066 0.3276 6 8 2.8320 1.7252 1.6817 7 6 3.4416 0.8679 2.6497 8 6 2.9402 -0.5657 2.4411 9 7 3.1420 -0.9270 1.0289 10 6 3.7624 -2.0739 0.6881 11 8 3.8391 -2.3994 -0.4809 12 7 4.2977 -2.8601 1.6430 13 6 5.0326 -3.9914 1.2847 14 7 5.1958 -4.2898 0.0065 15 6 5.8878 -5.3464 -0.3759 16 6 6.4621 -6.1928 0.5516 17 6 6.3120 -5.9221 1.9045 18 6 5.5844 -4.8007 2.2776 19 8 5.4118 -4.4957 3.5915 20 6 6.0085 -5.3764 4.5457 21 6 5.7095 -4.8743 5.9597 22 6 6.3392 -5.8027 6.9660 23 1 6.8973 -6.6644 6.6305 24 6 6.2039 -5.5515 8.3149 25 7 5.5248 -4.5019 8.7235 26 14 6.9839 -6.7026 9.5623 27 1 8.3620 -6.2412 9.8676 28 1 6.1752 -6.7044 10.8077 29 1 7.0347 -8.0773 9.0031 30 1 -1.0500 0.0003 -0.0005 31 1 4.2436 1.4366 0.1996 32 1 2.6957 2.1302 -0.3412 33 1 4.5246 0.8959 2.5302 34 1 3.1763 1.2040 3.6522 35 1 3.5029 -1.2477 3.0786 36 1 1.8800 -0.6234 2.6875 37 1 4.1722 -2.6397 2.5793 38 1 6.0025 -5.5548 -1.4293 39 1 7.0229 -7.0571 0.2274 40 1 6.7512 -6.5689 2.6496 41 1 5.5984 -6.3786 4.4213 42 1 7.0870 -5.4033 4.3905 43 1 6.1199 -3.8722 6.0839 44 1 4.6310 -4.8471 6.1152 45 1 5.4293 -4.3254 9.6725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491373719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:52 Heat of formation + Delta-G solvation = 11.268714 kcal Electronic energy + Delta-G solvation = -29787.254283 eV Core-core repulsion = 25580.374535 eV Total energy + Delta-G solvation = -4206.879748 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.21137 -40.25291 -38.67791 -37.77915 -35.31772 -34.98103 -33.57104 -33.44630 -31.61026 -31.01483 -30.57058 -29.20925 -27.85961 -25.45165 -24.85368 -23.77851 -22.90023 -22.53791 -21.09237 -20.26055 -19.14956 -18.06196 -17.98481 -17.45466 -16.64361 -16.32116 -16.15674 -16.08076 -15.71083 -15.60999 -15.49584 -15.19222 -14.70002 -14.55299 -14.32727 -14.16236 -13.95585 -13.37464 -13.15247 -12.87605 -12.44721 -12.41475 -12.03286 -11.97040 -11.95599 -11.36753 -11.09915 -11.01968 -11.00716 -10.78821 -10.70647 -10.56666 -10.33972 -10.15498 -10.07735 -9.81052 -9.44737 -9.25642 -9.12048 -8.91548 -8.54876 -7.67760 -6.20764 -4.25637 1.23425 1.43693 1.90450 2.62927 2.85510 3.07280 3.20695 3.26977 3.29112 3.46720 3.49472 3.52079 4.00355 4.07034 4.31532 4.38408 4.55234 4.66959 4.76343 4.86911 4.93870 4.97836 5.05461 5.13924 5.16331 5.22452 5.25214 5.44934 5.45682 5.51803 5.75040 5.82354 5.87244 5.98421 6.09075 6.16437 6.32111 6.49809 6.51281 6.70022 6.74097 7.31559 7.41111 7.48997 7.49903 7.62715 7.83163 8.11366 8.16232 8.48826 8.79425 9.39498 10.90633 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010259 B = 0.002817 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.544271 B = 9938.401286 C =12155.455737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.193 4.193 3 C 0.237 3.763 4 H 0.130 0.870 5 C 0.060 3.940 6 O -0.373 6.373 7 C 0.048 3.952 8 C 0.071 3.929 9 N -0.626 5.626 10 C 0.706 3.294 11 O -0.529 6.529 12 N -0.659 5.659 13 C 0.345 3.655 14 N -0.442 5.442 15 C 0.077 3.923 16 C -0.161 4.161 17 C -0.146 4.146 18 C 0.066 3.934 19 O -0.318 6.318 20 C 0.066 3.934 21 C 0.027 3.973 22 C -0.529 4.529 23 H 0.058 0.942 24 C 0.062 3.938 25 N -0.889 5.889 26 Si 0.899 3.101 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.218 0.782 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.062 0.938 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.419 0.581 38 H 0.157 0.843 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.003 8.261 -16.525 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.194 4.194 3 C 0.133 3.867 4 H 0.148 0.852 5 C -0.018 4.018 6 O -0.290 6.290 7 C -0.030 4.030 8 C -0.052 4.052 9 N -0.365 5.365 10 C 0.407 3.593 11 O -0.400 6.400 12 N -0.311 5.311 13 C 0.111 3.889 14 N -0.157 5.157 15 C -0.080 4.080 16 C -0.183 4.183 17 C -0.172 4.172 18 C 0.014 3.986 19 O -0.231 6.231 20 C -0.008 4.008 21 C -0.010 4.010 22 C -0.567 4.567 23 H 0.077 0.923 24 C -0.141 4.141 25 N -0.527 5.527 26 Si 0.726 3.274 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.197 1.197 30 H 0.235 0.765 31 H 0.087 0.913 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.259 0.741 38 H 0.174 0.826 39 H 0.153 0.847 40 H 0.163 0.837 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.597 9.016 -17.685 20.376 hybrid contribution 0.750 -1.625 1.977 2.666 sum -3.847 7.391 -15.709 17.782 Atomic orbital electron populations 1.24909 0.95804 0.99499 0.99520 1.23009 0.94178 1.01060 1.01143 1.18535 0.84161 0.90044 0.93950 0.85245 1.22997 1.00248 0.93960 0.84564 1.87996 1.71905 1.54456 1.14680 1.23020 0.97558 0.88802 0.93612 1.22445 1.03003 0.97806 0.81951 1.47384 1.61488 1.21004 1.06662 1.15753 0.78695 0.79657 0.85158 1.91024 1.61398 1.71526 1.16057 1.42636 1.53595 1.24521 1.10357 1.17479 0.95195 0.88163 0.88070 1.67606 1.15842 1.18399 1.13833 1.22416 0.95044 0.90389 1.00102 1.21896 1.02141 1.01456 0.92782 1.21593 1.00724 0.97247 0.97656 1.19522 0.98578 0.95122 0.85376 1.86090 1.72787 1.53025 1.11156 1.23397 0.96177 0.92086 0.89124 1.19120 0.98424 0.97682 0.85777 1.20943 1.34432 1.10553 0.90740 0.92338 1.24975 0.95092 0.95457 0.98538 1.69959 1.40183 1.26940 1.15578 0.86487 0.79250 0.81025 0.80641 1.20449 1.21001 1.19743 0.76489 0.91342 0.87172 0.92018 0.87010 0.88885 0.89992 0.74060 0.82594 0.84749 0.83682 0.92919 0.92913 0.95388 0.95380 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 19.25 29.55 0.57 -1.24 16 2 C -0.19 -2.22 12.33 -37.12 -0.46 -2.67 16 3 C 0.24 2.62 3.07 -70.21 -0.22 2.40 16 4 H 0.13 1.49 7.12 -51.93 -0.37 1.12 16 5 C 0.06 0.53 6.33 37.31 0.24 0.77 16 6 O -0.37 -3.82 10.54 -35.23 -0.37 -4.19 16 7 C 0.05 0.42 6.98 37.31 0.26 0.68 16 8 C 0.07 0.72 6.32 -3.53 -0.02 0.70 16 9 N -0.63 -7.69 2.69 -173.63 -0.47 -8.16 16 10 C 0.71 10.88 8.27 -86.92 -0.72 10.16 16 11 O -0.53 -9.74 14.11 5.29 0.07 -9.66 16 12 N -0.66 -10.03 5.31 -15.67 -0.08 -10.12 16 13 C 0.34 5.77 7.44 -154.43 -1.15 4.62 16 14 N -0.44 -7.47 7.89 -12.22 -0.10 -7.56 16 15 C 0.08 1.05 11.17 -17.55 -0.20 0.85 16 16 C -0.16 -1.99 10.10 -39.44 -0.40 -2.38 16 17 C -0.15 -2.09 9.14 -39.17 -0.36 -2.45 16 18 C 0.07 1.09 6.72 -38.92 -0.26 0.82 16 19 O -0.32 -5.75 9.39 -19.70 -0.18 -5.93 16 20 C 0.07 1.28 4.70 37.16 0.17 1.45 16 21 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 22 C -0.53 -13.92 9.11 -34.44 -0.31 -14.23 16 23 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 24 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 25 N -0.89 -25.17 13.29 55.43 0.74 -24.44 16 26 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 30 H 0.22 1.42 7.80 -54.09 -0.42 1.00 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.11 0.76 8.13 -51.93 -0.42 0.34 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.88 5.66 -51.93 -0.29 0.59 16 36 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 37 H 0.42 5.72 5.56 -40.82 -0.23 5.50 16 38 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.15 1.92 6.44 -52.49 -0.34 1.58 16 41 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 42 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 382.87 15.07 5.77 5.77 Total: -1.00 -33.65 382.87 -8.53 -42.18 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.79 Total: 5.12 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -3.10 Total: 1.57 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.09 Total: -50.28 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.48 Total: -19.79 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.65 -8.53 -42.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491373719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.451 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds