Wall clock time and date at job start Wed Apr 1 2020 03:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 H 1.08993 * 109.70734 * 72.57951 * 3 2 1 5 5 C 1.53294 * 109.67818 * 193.11935 * 3 2 1 6 6 O 1.42956 * 109.22633 * 67.42212 * 5 3 2 7 7 C 1.42963 * 114.16732 * 62.57832 * 6 5 3 8 8 C 1.53292 * 109.22130 * 297.41782 * 7 6 5 9 9 N 1.47150 * 109.67976 * 312.04425 * 3 2 1 10 10 C 1.34778 * 120.98389 * 110.79497 * 9 3 2 11 11 O 1.21586 * 119.99687 * 355.00734 * 10 9 3 12 12 N 1.34773 * 120.00118 * 175.00937 * 10 9 3 13 13 C 1.39586 * 120.00032 * 185.13953 * 12 10 9 14 14 N 1.32266 * 119.72372 * 359.73053 * 13 12 10 15 15 C 1.31969 * 121.68793 * 179.70943 * 14 13 12 16 16 C 1.38076 * 120.95284 * 0.56162 * 15 14 13 17 17 C 1.38794 * 119.35256 * 359.72906 * 16 15 14 18 18 C 1.38782 * 118.44903 * 359.97438 * 17 16 15 19 19 O 1.35986 * 120.49842 * 180.02562 * 18 17 16 20 20 C 1.42906 * 116.99624 * 359.97438 * 19 18 17 21 21 C 1.52995 * 109.46681 * 179.97438 * 20 19 18 22 22 C 1.50702 * 109.46869 * 180.02562 * 21 20 19 23 23 H 1.08001 * 119.99930 * 0.02562 * 22 21 20 24 24 C 1.37879 * 120.00006 * 179.97438 * 22 21 20 25 25 N 1.31517 * 120.00084 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99936 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46946 * 90.00335 * 26 24 22 28 28 H 1.48497 * 109.47043 * 210.00212 * 26 24 22 29 29 H 1.48493 * 109.47252 * 330.00301 * 26 24 22 30 30 H 4.19109 * 14.98111 * 0.02562 * 4 2 1 31 31 H 1.08997 * 109.50745 * 187.34880 * 5 3 2 32 32 H 1.08998 * 109.50870 * 307.44453 * 5 3 2 33 33 H 1.08995 * 109.51113 * 57.34582 * 7 6 5 34 34 H 1.09005 * 109.51031 * 177.50030 * 7 6 5 35 35 H 1.09003 * 109.67818 * 172.02383 * 8 7 6 36 36 H 1.08999 * 109.68934 * 292.54091 * 8 7 6 37 37 H 0.97004 * 119.99939 * 5.13981 * 12 10 9 38 38 H 1.07999 * 119.52969 * 180.26487 * 15 14 13 39 39 H 1.07999 * 120.32560 * 179.74202 * 16 15 14 40 40 H 1.07996 * 120.77408 * 179.97438 * 17 16 15 41 41 H 1.08997 * 109.47074 * 300.00137 * 20 19 18 42 42 H 1.08997 * 109.46870 * 59.99936 * 20 19 18 43 43 H 1.08997 * 109.47500 * 299.99903 * 21 20 19 44 44 H 1.08997 * 109.47500 * 60.00348 * 21 20 19 45 45 H 0.97001 * 119.99746 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0137 -0.3064 -0.9790 5 6 3.1616 1.4066 0.3276 6 8 2.8320 1.7252 1.6817 7 6 3.4416 0.8679 2.6497 8 6 2.9402 -0.5657 2.4411 9 7 3.1420 -0.9270 1.0289 10 6 3.7624 -2.0739 0.6881 11 8 3.8391 -2.3994 -0.4809 12 7 4.2977 -2.8601 1.6430 13 6 5.0326 -3.9914 1.2847 14 7 5.1958 -4.2898 0.0065 15 6 5.8878 -5.3464 -0.3759 16 6 6.4621 -6.1928 0.5516 17 6 6.3120 -5.9221 1.9045 18 6 5.5844 -4.8007 2.2776 19 8 5.4118 -4.4957 3.5915 20 6 6.0085 -5.3764 4.5457 21 6 5.7095 -4.8743 5.9597 22 6 6.3392 -5.8027 6.9660 23 1 6.8973 -6.6644 6.6305 24 6 6.2039 -5.5515 8.3149 25 7 5.5248 -4.5019 8.7235 26 14 6.9839 -6.7026 9.5623 27 1 8.3620 -6.2412 9.8676 28 1 6.1752 -6.7044 10.8077 29 1 7.0347 -8.0773 9.0031 30 1 -1.0500 0.0003 -0.0005 31 1 4.2436 1.4366 0.1996 32 1 2.6957 2.1302 -0.3412 33 1 4.5246 0.8959 2.5302 34 1 3.1763 1.2040 3.6522 35 1 3.5029 -1.2477 3.0786 36 1 1.8800 -0.6234 2.6875 37 1 4.1722 -2.6397 2.5793 38 1 6.0025 -5.5548 -1.4293 39 1 7.0229 -7.0571 0.2274 40 1 6.7512 -6.5689 2.6496 41 1 5.5984 -6.3786 4.4213 42 1 7.0870 -5.4033 4.3905 43 1 6.1199 -3.8722 6.0839 44 1 4.6310 -4.8471 6.1152 45 1 5.4293 -4.3254 9.6725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491373719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:51 Heat of formation + Delta-G solvation = -9.583947 kcal Electronic energy + Delta-G solvation = -29788.158522 eV Core-core repulsion = 25580.374535 eV Total energy + Delta-G solvation = -4207.783987 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.32231 -41.31396 -39.72398 -39.04377 -36.28336 -36.10917 -35.45480 -34.37954 -32.88509 -32.21501 -31.79082 -30.46115 -28.77719 -27.16311 -25.70437 -25.02356 -24.09785 -23.51552 -22.65246 -21.36731 -20.27221 -19.29908 -18.87561 -18.66346 -18.05023 -17.54065 -17.37555 -17.26923 -16.83250 -16.63449 -16.46958 -16.29105 -16.14771 -15.65178 -15.43112 -15.23885 -15.16112 -14.57132 -14.35085 -14.15660 -13.95845 -13.63056 -13.33610 -13.21876 -12.80685 -12.74545 -12.67624 -12.44208 -12.22605 -11.97782 -11.84300 -11.71962 -11.62971 -11.52628 -11.40306 -11.28670 -11.01598 -10.60023 -10.43261 -10.28787 -9.88022 -8.86491 -8.25139 -6.37259 0.11658 0.29010 0.92893 1.43158 1.43799 1.54616 1.78944 1.88635 1.97362 2.10441 2.44547 2.51053 2.77344 2.88144 3.10357 3.29737 3.50240 3.59933 3.79946 3.85747 3.91223 3.98979 4.09685 4.12063 4.29481 4.30216 4.33845 4.34762 4.46857 4.53069 4.73173 4.74540 4.75577 4.92979 5.01753 5.09324 5.17878 5.22925 5.31817 5.47160 5.51356 5.59684 5.74940 6.00464 6.08738 6.32522 6.43414 6.60196 6.77385 7.02528 7.32707 7.34403 8.87320 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010259 B = 0.002817 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.544271 B = 9938.401286 C =12155.455737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.232 4.232 3 C 0.233 3.767 4 H 0.119 0.881 5 C 0.065 3.935 6 O -0.383 6.383 7 C 0.050 3.950 8 C 0.069 3.931 9 N -0.621 5.621 10 C 0.703 3.297 11 O -0.565 6.565 12 N -0.659 5.659 13 C 0.325 3.675 14 N -0.473 5.473 15 C 0.075 3.925 16 C -0.144 4.144 17 C -0.145 4.145 18 C 0.042 3.958 19 O -0.330 6.330 20 C 0.083 3.917 21 C 0.031 3.969 22 C -0.544 4.544 23 H 0.070 0.930 24 C 0.005 3.995 25 N -0.928 5.928 26 Si 0.968 3.032 27 H -0.272 1.272 28 H -0.284 1.284 29 H -0.260 1.260 30 H 0.249 0.751 31 H 0.076 0.924 32 H 0.130 0.870 33 H 0.065 0.935 34 H 0.130 0.870 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.422 0.578 38 H 0.187 0.813 39 H 0.177 0.823 40 H 0.159 0.841 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.003 0.997 44 H 0.001 0.999 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 7.052 -17.033 18.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.233 4.233 3 C 0.129 3.871 4 H 0.136 0.864 5 C -0.013 4.013 6 O -0.301 6.301 7 C -0.028 4.028 8 C -0.053 4.053 9 N -0.360 5.360 10 C 0.404 3.596 11 O -0.439 6.439 12 N -0.311 5.311 13 C 0.093 3.907 14 N -0.188 5.188 15 C -0.081 4.081 16 C -0.165 4.165 17 C -0.172 4.172 18 C -0.009 4.009 19 O -0.244 6.244 20 C 0.009 3.991 21 C -0.007 4.007 22 C -0.582 4.582 23 H 0.088 0.912 24 C -0.194 4.194 25 N -0.567 5.567 26 Si 0.793 3.207 27 H -0.197 1.197 28 H -0.210 1.210 29 H -0.184 1.184 30 H 0.265 0.735 31 H 0.094 0.906 32 H 0.148 0.852 33 H 0.083 0.917 34 H 0.148 0.852 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.263 0.737 38 H 0.203 0.797 39 H 0.194 0.806 40 H 0.176 0.824 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.021 0.979 44 H 0.020 0.980 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.828 7.830 -18.189 20.170 hybrid contribution 0.461 -1.257 2.006 2.411 sum -3.367 6.574 -16.184 17.789 Atomic orbital electron populations 1.25737 0.96671 0.97993 0.97895 1.23323 0.94820 1.02532 1.02669 1.18671 0.84436 0.90787 0.93174 0.86374 1.23084 1.00815 0.92997 0.84386 1.87977 1.72239 1.54649 1.15259 1.23102 0.97678 0.87681 0.94300 1.22581 1.03127 0.98845 0.80791 1.47450 1.60507 1.20121 1.07890 1.15908 0.78743 0.80194 0.84706 1.90977 1.62992 1.72611 1.17343 1.42651 1.53508 1.24464 1.10506 1.17664 0.95961 0.88779 0.88327 1.67650 1.17162 1.20067 1.13921 1.23065 0.93715 0.89405 1.01957 1.22292 1.00878 1.01914 0.91431 1.21900 0.99805 0.96377 0.99120 1.19656 1.00430 0.96592 0.84249 1.86019 1.73274 1.53012 1.12069 1.22967 0.96937 0.92189 0.87003 1.18936 0.96330 0.96410 0.88981 1.21396 1.34280 1.11049 0.91484 0.91157 1.25930 0.95586 0.97015 1.00830 1.70092 1.41698 1.28844 1.16057 0.85391 0.78289 0.79267 0.77783 1.19726 1.20969 1.18447 0.73474 0.90596 0.85197 0.91665 0.85217 0.88726 0.89984 0.73688 0.79655 0.80556 0.82368 0.91854 0.91667 0.97866 0.98044 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 19.25 74.32 1.43 -1.74 16 2 C -0.23 -5.34 12.33 31.13 0.38 -4.95 16 3 C 0.23 5.27 3.07 43.16 0.13 5.40 16 4 H 0.12 2.89 7.12 -2.39 -0.02 2.87 16 5 C 0.06 1.12 6.33 72.08 0.46 1.58 16 6 O -0.38 -7.60 10.54 -148.98 -1.57 -9.17 16 7 C 0.05 0.87 6.98 72.08 0.50 1.37 16 8 C 0.07 1.43 6.32 86.35 0.55 1.98 16 9 N -0.62 -15.80 2.69 -821.52 -2.21 -18.01 16 10 C 0.70 22.57 8.27 179.05 1.48 24.06 16 11 O -0.57 -21.62 14.11 -3.99 -0.06 -21.68 16 12 N -0.66 -20.90 5.31 -321.76 -1.71 -22.61 16 13 C 0.33 11.05 7.44 132.98 0.99 12.04 16 14 N -0.47 -15.87 7.89 -192.58 -1.52 -17.39 16 15 C 0.08 1.89 11.17 84.63 0.95 2.84 16 16 C -0.14 -3.10 10.10 22.36 0.23 -2.87 16 17 C -0.15 -3.88 9.14 22.53 0.21 -3.68 16 18 C 0.04 1.37 6.72 22.70 0.15 1.52 16 19 O -0.33 -12.13 9.39 -93.39 -0.88 -13.00 16 20 C 0.08 3.20 4.70 71.98 0.34 3.54 16 21 C 0.03 1.52 5.34 29.85 0.16 1.68 16 22 C -0.54 -28.64 9.11 25.60 0.23 -28.41 16 23 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 24 C 0.01 0.29 5.46 84.65 0.46 0.75 16 25 N -0.93 -53.50 13.29 21.45 0.28 -53.21 16 26 Si 0.97 41.51 29.54 68.60 2.03 43.54 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 29 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 30 H 0.25 2.71 7.80 -4.42 -0.03 2.68 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.13 1.69 8.13 -2.39 -0.02 1.67 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.13 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.09 1.90 5.66 -2.39 -0.01 1.89 16 36 H 0.08 1.70 8.08 -2.39 -0.02 1.68 16 37 H 0.42 12.21 5.56 -92.71 -0.52 11.70 16 38 H 0.19 3.38 8.06 -2.91 -0.02 3.35 16 39 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 40 H 0.16 3.75 6.44 -2.91 -0.02 3.73 16 41 H 0.06 2.28 7.70 -2.39 -0.02 2.26 16 42 H 0.07 2.32 7.70 -2.39 -0.02 2.30 16 43 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 45 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -74.12 382.87 3.53 -70.59 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.51 Total: 25.85 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 8.65 Total: 15.09 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -5.15 Total: -111.22 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -2.50 Total: -43.86 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -74.12 3.53 -70.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491373719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.010 kcal (2) G-P(sol) polarization free energy of solvation -74.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds