Wall clock time and date at job start Wed Apr 1 2020 04:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47019 * 327.06042 * 3 2 1 5 5 C 1.36940 * 119.99776 * 261.44188 * 4 3 2 6 6 H 1.07997 * 119.99913 * 203.64304 * 5 4 3 7 7 C 1.38811 * 119.99784 * 23.64291 * 5 4 3 8 8 N 1.31613 * 120.00524 * 11.25310 * 7 5 4 9 9 Si 1.86806 * 119.99809 * 191.25192 * 7 5 4 10 10 H 1.48503 * 109.47000 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46787 * 120.00023 * 9 7 5 12 12 H 1.48497 * 109.47232 * 240.00447 * 9 7 5 13 13 C 1.46493 * 120.00172 * 81.43950 * 4 3 2 14 14 C 1.50701 * 109.47339 * 89.99980 * 13 4 3 15 15 O 1.21283 * 119.99576 * 0.02562 * 14 13 4 16 16 N 1.34772 * 120.00092 * 179.97438 * 14 13 4 17 17 C 1.46966 * 120.59175 * 179.97438 * 16 14 13 18 18 C 1.53373 * 108.63748 * 235.25396 * 17 16 14 19 19 N 1.46963 * 108.63151 * 310.57748 * 18 17 16 20 20 C 1.34782 * 120.59453 * 235.20167 * 19 18 17 21 21 O 1.21703 * 119.99795 * 5.87321 * 20 19 18 22 22 C 1.46647 * 120.00208 * 185.87259 * 20 19 18 23 23 C 1.36550 * 125.99085 * 187.34630 * 22 20 19 24 24 C 1.40356 * 106.71111 * 180.02562 * 23 22 20 25 25 C 1.35135 * 107.11677 * 359.97438 * 24 23 22 26 26 O 1.33933 * 108.76641 * 0.02562 * 25 24 23 27 27 C 1.46967 * 118.81384 * 55.47844 * 19 18 17 28 28 C 1.46958 * 120.59816 * 0.02981 * 16 14 13 29 29 H 4.40643 * 5.51371 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.47464 * 207.05901 * 3 2 1 31 31 H 1.08996 * 109.46910 * 87.05486 * 3 2 1 32 32 H 0.96997 * 120.00582 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47636 * 330.00010 * 13 4 3 34 34 H 1.09003 * 109.47472 * 209.99933 * 13 4 3 35 35 H 1.08999 * 109.60840 * 115.50862 * 17 16 14 36 36 H 1.09004 * 109.75444 * 355.08262 * 17 16 14 37 37 H 1.09002 * 109.60760 * 190.83263 * 18 17 16 38 38 H 1.08996 * 109.60827 * 70.32042 * 18 17 16 39 39 H 1.08006 * 126.64240 * 0.05353 * 23 22 20 40 40 H 1.07997 * 126.44586 * 180.02562 * 24 23 22 41 41 H 1.07997 * 125.61937 * 179.97438 * 25 24 23 42 42 H 1.08997 * 109.60903 * 64.26506 * 27 19 18 43 43 H 1.08998 * 109.60933 * 184.77418 * 27 19 18 44 44 H 1.09002 * 109.61097 * 244.49662 * 28 16 14 45 45 H 1.09002 * 109.60998 * 4.99828 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1583 0.7511 5 6 3.5294 -1.0128 2.0543 6 1 4.2222 -1.7171 2.4906 7 6 3.0388 0.0399 2.8145 8 7 2.0358 0.7644 2.3658 9 14 3.8021 0.4283 4.4747 10 1 4.9065 -0.5264 4.7472 11 1 4.3377 1.8133 4.4613 12 1 2.7695 0.3070 5.5349 13 6 3.2015 -2.4729 0.1080 14 6 4.5489 -2.6451 -0.5447 15 8 5.3725 -1.7572 -0.4787 16 7 4.8390 -3.7860 -1.2008 17 6 6.1486 -3.9675 -1.8425 18 6 5.9268 -4.3107 -3.3208 19 7 4.9390 -5.3953 -3.4079 20 6 5.2287 -6.5359 -4.0650 21 8 6.3503 -6.7192 -4.5004 22 6 4.1925 -7.5560 -4.2551 23 6 4.3820 -8.8057 -4.7720 24 6 3.1285 -9.4371 -4.7712 25 6 2.2400 -8.5566 -4.2598 26 8 2.8849 -7.4243 -3.9502 27 6 3.6272 -5.2115 -2.7711 28 6 3.8510 -4.8704 -1.2885 29 1 -1.0499 -0.0001 0.0003 30 1 3.0090 0.9160 0.4675 31 1 3.0093 -0.0520 -1.0263 32 1 1.6927 1.4997 2.8972 33 1 2.4196 -2.5479 -0.6477 34 1 3.0586 -3.2516 0.8572 35 1 6.6854 -4.7811 -1.3547 36 1 6.7283 -3.0477 -1.7635 37 1 6.8672 -4.6356 -3.7660 38 1 5.5536 -3.4327 -3.8481 39 1 5.3157 -9.2267 -5.1146 40 1 2.9144 -10.4386 -5.1139 41 1 1.1837 -8.7361 -4.1239 42 1 3.0941 -4.3963 -3.2602 43 1 3.0486 -6.1315 -2.8533 44 1 4.2237 -5.7484 -0.7611 45 1 2.9105 -4.5453 -0.8436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491757601.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:11 Heat of formation + Delta-G solvation = 68.052419 kcal Electronic energy + Delta-G solvation = -30213.164272 eV Core-core repulsion = 26008.746850 eV Total energy + Delta-G solvation = -4204.417422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.12567 -40.36054 -39.10308 -37.05183 -35.64537 -34.09860 -33.39357 -32.11500 -31.59554 -31.09864 -30.18074 -28.25959 -26.91168 -25.93510 -24.29089 -23.74422 -22.38726 -22.16421 -21.40659 -20.39738 -18.99817 -17.77489 -17.48831 -17.12049 -16.80178 -16.49808 -16.34727 -16.06140 -15.59967 -15.29007 -15.10553 -14.81527 -14.48231 -13.95984 -13.71447 -13.54363 -13.46236 -13.39470 -13.28676 -13.07504 -12.73205 -12.55078 -12.41228 -11.68355 -11.51481 -11.49305 -11.35516 -11.29268 -10.94933 -10.74493 -10.52465 -10.42567 -10.24197 -10.05798 -9.42112 -9.35981 -9.05294 -8.97741 -8.84129 -8.40550 -8.27687 -6.97456 -5.79598 -3.29344 0.69964 1.98369 2.21160 2.63113 2.85184 3.26929 3.28996 3.38339 3.44883 3.47668 4.06971 4.12250 4.34771 4.49380 4.51284 4.54667 4.63203 4.73861 4.97965 5.00269 5.12531 5.18537 5.24151 5.34738 5.38187 5.40611 5.50819 5.53800 5.65922 5.72708 5.75127 5.83157 5.85956 5.93096 6.03973 6.16290 6.20032 6.45167 6.68853 6.74493 6.98316 7.29464 7.42868 7.69316 7.70296 7.75161 8.27049 8.79645 9.07808 9.14853 9.70725 10.16599 11.24203 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.002560 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.271571 B =10933.119784 C =11621.046470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.092 4.092 3 C 0.269 3.731 4 N -0.562 5.562 5 C -0.257 4.257 6 H 0.071 0.929 7 C 0.006 3.994 8 N -0.895 5.895 9 Si 0.909 3.091 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.290 1.290 13 C 0.134 3.866 14 C 0.483 3.517 15 O -0.517 6.517 16 N -0.628 5.628 17 C 0.098 3.902 18 C 0.100 3.900 19 N -0.601 5.601 20 C 0.602 3.398 21 O -0.524 6.524 22 C -0.077 4.077 23 C -0.119 4.119 24 C -0.225 4.225 25 C -0.012 4.012 26 O -0.157 6.157 27 C 0.078 3.922 28 C 0.100 3.900 29 H 0.191 0.809 30 H 0.104 0.896 31 H 0.032 0.968 32 H 0.255 0.745 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.210 0.790 42 H 0.080 0.920 43 H 0.116 0.884 44 H 0.069 0.931 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.793 -18.859 -14.428 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.095 4.095 3 C 0.144 3.856 4 N -0.279 5.279 5 C -0.386 4.386 6 H 0.088 0.912 7 C -0.193 4.193 8 N -0.539 5.539 9 Si 0.739 3.261 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.217 1.217 13 C 0.002 3.998 14 C 0.270 3.730 15 O -0.390 6.390 16 N -0.366 5.366 17 C -0.026 4.026 18 C -0.023 4.023 19 N -0.333 5.333 20 C 0.391 3.609 21 O -0.402 6.402 22 C -0.129 4.129 23 C -0.139 4.139 24 C -0.244 4.244 25 C -0.081 4.081 26 O -0.054 6.054 27 C -0.045 4.045 28 C -0.025 4.025 29 H 0.208 0.792 30 H 0.122 0.878 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.177 0.823 40 H 0.174 0.826 41 H 0.227 0.773 42 H 0.099 0.901 43 H 0.133 0.867 44 H 0.088 0.912 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.095 -17.940 -14.324 22.957 hybrid contribution -0.084 -0.109 0.899 0.910 sum 0.011 -18.049 -13.425 22.495 Atomic orbital electron populations 1.24183 0.95309 1.04874 1.07948 1.24299 0.95228 0.96183 0.93771 1.17759 0.82443 0.92930 0.92441 1.43556 1.72944 1.01331 1.10067 1.19171 1.20710 1.12308 0.86374 0.91161 1.25022 0.96498 0.99532 0.98213 1.70019 1.24474 1.21505 1.37854 0.86124 0.78473 0.78104 0.83435 1.20297 1.21476 1.21734 1.20717 0.91062 0.91156 0.96867 1.23353 0.92466 0.80041 0.77145 1.90638 1.49827 1.40433 1.58060 1.48478 1.14715 1.17272 1.56183 1.21831 0.86637 1.03106 0.91069 1.22140 0.93463 0.89023 0.97650 1.47958 1.16472 1.15830 1.53012 1.16715 0.85651 0.80155 0.78428 1.90874 1.20319 1.77636 1.51391 1.22043 0.82364 0.98116 1.10341 1.21987 0.99811 0.92554 0.99566 1.21867 0.92650 1.02212 1.07649 1.24597 0.99066 0.84197 1.00220 1.84217 1.19608 1.36695 1.64864 1.22801 0.83996 1.04199 0.93479 1.22089 0.94130 0.91074 0.95216 0.79184 0.87782 0.95010 0.93456 0.91305 0.90168 0.91679 0.87745 0.87881 0.90479 0.82285 0.82622 0.77311 0.90146 0.86704 0.91222 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.68 19.25 29.55 0.57 -6.11 16 2 C -0.09 -2.20 11.62 -37.12 -0.43 -2.63 16 3 C 0.27 6.52 5.39 -6.83 -0.04 6.49 16 4 N -0.56 -13.70 1.98 -177.95 -0.35 -14.05 16 5 C -0.26 -6.92 9.66 -15.06 -0.15 -7.07 16 6 H 0.07 1.91 7.85 -52.49 -0.41 1.49 16 7 C 0.01 0.17 5.07 -17.43 -0.09 0.08 16 8 N -0.89 -25.21 9.27 55.49 0.51 -24.70 16 9 Si 0.91 21.84 29.57 -169.99 -5.03 16.82 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.13 2.56 4.48 -5.20 -0.02 2.54 16 14 C 0.48 8.95 7.77 -10.99 -0.09 8.87 16 15 O -0.52 -11.81 15.84 5.56 0.09 -11.72 16 16 N -0.63 -8.82 2.95 -172.24 -0.51 -9.33 16 17 C 0.10 1.25 6.59 -3.59 -0.02 1.23 16 18 C 0.10 1.13 6.60 -3.60 -0.02 1.11 16 19 N -0.60 -6.67 2.94 -173.79 -0.51 -7.18 16 20 C 0.60 7.30 7.65 -12.86 -0.10 7.21 16 21 O -0.52 -7.72 16.29 5.19 0.08 -7.63 16 22 C -0.08 -0.78 6.79 -36.80 -0.25 -1.03 16 23 C -0.12 -1.05 10.63 -39.39 -0.42 -1.47 16 24 C -0.22 -1.44 10.87 -39.89 -0.43 -1.88 16 25 C -0.01 -0.07 12.08 29.63 0.36 0.29 16 26 O -0.16 -1.29 7.19 4.98 0.04 -1.26 16 27 C 0.08 0.73 6.37 -3.39 -0.02 0.71 16 28 C 0.10 1.04 6.52 -3.39 -0.02 1.02 16 29 H 0.19 3.45 7.80 -54.10 -0.42 3.03 16 30 H 0.10 2.81 6.39 -51.93 -0.33 2.48 16 31 H 0.03 0.71 8.13 -51.93 -0.42 0.29 16 32 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.07 1.17 7.65 -51.93 -0.40 0.77 16 34 H 0.08 1.45 7.81 -51.93 -0.41 1.04 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 1.49 7.00 -51.93 -0.36 1.13 16 37 H 0.10 1.16 6.99 -51.93 -0.36 0.79 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.16 1.31 8.06 -52.48 -0.42 0.88 16 40 H 0.16 0.63 8.06 -52.49 -0.42 0.20 16 41 H 0.21 0.36 8.06 -52.49 -0.42 -0.06 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.12 0.94 4.06 -53.92 -0.22 0.72 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 0.99 5.91 -51.93 -0.31 0.68 16 LS Contribution 379.33 15.07 5.72 5.72 Total: -1.00 -34.95 379.33 -6.87 -41.83 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.74 Total: 2.18 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -1.18 Total: 9.35 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.86 Total: -55.26 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: 0.21 Total: -20.61 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.95 -6.87 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491757601.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.878 kcal (2) G-P(sol) polarization free energy of solvation -34.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds