Wall clock time and date at job start Wed Apr 1 2020 04:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47019 * 327.06042 * 3 2 1 5 5 C 1.36940 * 119.99776 * 261.44188 * 4 3 2 6 6 H 1.07997 * 119.99913 * 203.64304 * 5 4 3 7 7 C 1.38811 * 119.99784 * 23.64291 * 5 4 3 8 8 N 1.31613 * 120.00524 * 11.25310 * 7 5 4 9 9 Si 1.86806 * 119.99809 * 191.25192 * 7 5 4 10 10 H 1.48503 * 109.47000 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46787 * 120.00023 * 9 7 5 12 12 H 1.48497 * 109.47232 * 240.00447 * 9 7 5 13 13 C 1.46493 * 120.00172 * 81.43950 * 4 3 2 14 14 C 1.50701 * 109.47339 * 89.99980 * 13 4 3 15 15 O 1.21283 * 119.99576 * 0.02562 * 14 13 4 16 16 N 1.34772 * 120.00092 * 179.97438 * 14 13 4 17 17 C 1.46966 * 120.59175 * 179.97438 * 16 14 13 18 18 C 1.53373 * 108.63748 * 235.25396 * 17 16 14 19 19 N 1.46963 * 108.63151 * 310.57748 * 18 17 16 20 20 C 1.34782 * 120.59453 * 235.20167 * 19 18 17 21 21 O 1.21703 * 119.99795 * 5.87321 * 20 19 18 22 22 C 1.46647 * 120.00208 * 185.87259 * 20 19 18 23 23 C 1.36550 * 125.99085 * 187.34630 * 22 20 19 24 24 C 1.40356 * 106.71111 * 180.02562 * 23 22 20 25 25 C 1.35135 * 107.11677 * 359.97438 * 24 23 22 26 26 O 1.33933 * 108.76641 * 0.02562 * 25 24 23 27 27 C 1.46967 * 118.81384 * 55.47844 * 19 18 17 28 28 C 1.46958 * 120.59816 * 0.02981 * 16 14 13 29 29 H 4.40643 * 5.51371 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.47464 * 207.05901 * 3 2 1 31 31 H 1.08996 * 109.46910 * 87.05486 * 3 2 1 32 32 H 0.96997 * 120.00582 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47636 * 330.00010 * 13 4 3 34 34 H 1.09003 * 109.47472 * 209.99933 * 13 4 3 35 35 H 1.08999 * 109.60840 * 115.50862 * 17 16 14 36 36 H 1.09004 * 109.75444 * 355.08262 * 17 16 14 37 37 H 1.09002 * 109.60760 * 190.83263 * 18 17 16 38 38 H 1.08996 * 109.60827 * 70.32042 * 18 17 16 39 39 H 1.08006 * 126.64240 * 0.05353 * 23 22 20 40 40 H 1.07997 * 126.44586 * 180.02562 * 24 23 22 41 41 H 1.07997 * 125.61937 * 179.97438 * 25 24 23 42 42 H 1.08997 * 109.60903 * 64.26506 * 27 19 18 43 43 H 1.08998 * 109.60933 * 184.77418 * 27 19 18 44 44 H 1.09002 * 109.61097 * 244.49662 * 28 16 14 45 45 H 1.09002 * 109.60998 * 4.99828 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1583 0.7511 5 6 3.5294 -1.0128 2.0543 6 1 4.2222 -1.7171 2.4906 7 6 3.0388 0.0399 2.8145 8 7 2.0358 0.7644 2.3658 9 14 3.8021 0.4283 4.4747 10 1 4.9065 -0.5264 4.7472 11 1 4.3377 1.8133 4.4613 12 1 2.7695 0.3070 5.5349 13 6 3.2015 -2.4729 0.1080 14 6 4.5489 -2.6451 -0.5447 15 8 5.3725 -1.7572 -0.4787 16 7 4.8390 -3.7860 -1.2008 17 6 6.1486 -3.9675 -1.8425 18 6 5.9268 -4.3107 -3.3208 19 7 4.9390 -5.3953 -3.4079 20 6 5.2287 -6.5359 -4.0650 21 8 6.3503 -6.7192 -4.5004 22 6 4.1925 -7.5560 -4.2551 23 6 4.3820 -8.8057 -4.7720 24 6 3.1285 -9.4371 -4.7712 25 6 2.2400 -8.5566 -4.2598 26 8 2.8849 -7.4243 -3.9502 27 6 3.6272 -5.2115 -2.7711 28 6 3.8510 -4.8704 -1.2885 29 1 -1.0499 -0.0001 0.0003 30 1 3.0090 0.9160 0.4675 31 1 3.0093 -0.0520 -1.0263 32 1 1.6927 1.4997 2.8972 33 1 2.4196 -2.5479 -0.6477 34 1 3.0586 -3.2516 0.8572 35 1 6.6854 -4.7811 -1.3547 36 1 6.7283 -3.0477 -1.7635 37 1 6.8672 -4.6356 -3.7660 38 1 5.5536 -3.4327 -3.8481 39 1 5.3157 -9.2267 -5.1146 40 1 2.9144 -10.4386 -5.1139 41 1 1.1837 -8.7361 -4.1239 42 1 3.0941 -4.3963 -3.2602 43 1 3.0486 -6.1315 -2.8533 44 1 4.2237 -5.7484 -0.7611 45 1 2.9105 -4.5453 -0.8436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491757601.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:10 Heat of formation + Delta-G solvation = 46.111068 kcal Electronic energy + Delta-G solvation = -30214.115720 eV Core-core repulsion = 26008.746850 eV Total energy + Delta-G solvation = -4205.368870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.71195 -41.41116 -40.33264 -38.27108 -37.38052 -35.19687 -34.04030 -33.54146 -33.30773 -32.60736 -30.87203 -29.56911 -28.26402 -27.80924 -25.33799 -24.63532 -23.86795 -22.72169 -22.52587 -21.30019 -20.06552 -19.33536 -18.80857 -18.16506 -18.05333 -17.54003 -17.28340 -17.17622 -16.95762 -16.48648 -16.45187 -16.04769 -15.52159 -15.32529 -15.21741 -14.95027 -14.69067 -14.26436 -14.17555 -14.11748 -14.00704 -13.55927 -13.41423 -13.26089 -13.12666 -12.81418 -12.62742 -12.51678 -12.42708 -12.36182 -12.24283 -11.97518 -11.44595 -11.08875 -11.01068 -10.76434 -10.66153 -10.40095 -10.26522 -9.70577 -9.35418 -8.87808 -7.83754 -5.33816 0.01933 1.44283 1.45051 1.47961 1.48427 1.57118 1.79189 1.80942 2.04129 2.21401 2.38829 2.53177 2.60218 3.30723 3.37091 3.69633 3.74316 3.78761 3.95441 4.01289 4.09674 4.12324 4.15531 4.20340 4.27930 4.43678 4.55049 4.57034 4.64457 4.65174 4.75022 4.76876 4.90254 4.93661 4.96396 5.05429 5.29529 5.34031 5.46287 5.53812 5.62276 5.69309 5.86213 6.15297 6.27276 6.45221 6.82071 7.08406 7.36418 7.36604 7.77933 8.19681 9.17709 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.002560 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.271571 B =10933.119784 C =11621.046470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.135 4.135 3 C 0.277 3.723 4 N -0.580 5.580 5 C -0.261 4.261 6 H 0.062 0.938 7 C -0.041 4.041 8 N -0.914 5.914 9 Si 0.964 3.036 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.288 1.288 13 C 0.134 3.866 14 C 0.488 3.512 15 O -0.570 6.570 16 N -0.618 5.618 17 C 0.101 3.899 18 C 0.108 3.892 19 N -0.602 5.602 20 C 0.600 3.400 21 O -0.562 6.562 22 C -0.109 4.109 23 C -0.121 4.121 24 C -0.235 4.235 25 C 0.010 3.990 26 O -0.162 6.162 27 C 0.084 3.916 28 C 0.094 3.906 29 H 0.228 0.772 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.248 0.752 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.156 0.844 40 H 0.181 0.819 41 H 0.254 0.746 42 H 0.085 0.915 43 H 0.135 0.865 44 H 0.083 0.917 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 -21.334 -14.979 26.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.138 4.138 3 C 0.152 3.848 4 N -0.298 5.298 5 C -0.391 4.391 6 H 0.080 0.920 7 C -0.238 4.238 8 N -0.559 5.559 9 Si 0.793 3.207 10 H -0.200 1.200 11 H -0.221 1.221 12 H -0.215 1.215 13 C 0.004 3.996 14 C 0.275 3.725 15 O -0.447 6.447 16 N -0.355 5.355 17 C -0.023 4.023 18 C -0.015 4.015 19 N -0.333 5.333 20 C 0.391 3.609 21 O -0.443 6.443 22 C -0.160 4.160 23 C -0.142 4.142 24 C -0.253 4.253 25 C -0.059 4.059 26 O -0.059 6.059 27 C -0.038 4.038 28 C -0.028 4.028 29 H 0.244 0.756 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.174 0.826 40 H 0.198 0.802 41 H 0.270 0.730 42 H 0.103 0.897 43 H 0.151 0.849 44 H 0.101 0.899 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.199 -20.488 -14.905 25.431 hybrid contribution 0.561 0.483 0.959 1.212 sum -1.638 -20.005 -13.945 24.441 Atomic orbital electron populations 1.25012 0.96194 1.02790 1.05906 1.24373 0.95662 0.98112 0.95628 1.17465 0.83263 0.91694 0.92417 1.43660 1.73397 1.03166 1.09574 1.19307 1.20115 1.12077 0.87559 0.91985 1.25635 0.97244 0.99833 1.01039 1.70173 1.25486 1.21691 1.38529 0.85261 0.77729 0.77347 0.80332 1.19951 1.22092 1.21508 1.20902 0.91984 0.89114 0.97591 1.22989 0.91690 0.80578 0.77251 1.90623 1.51098 1.42605 1.60405 1.48366 1.15775 1.16763 1.54547 1.21836 0.85858 1.02487 0.92110 1.21981 0.93904 0.89331 0.96265 1.48025 1.16874 1.15464 1.52952 1.16981 0.85734 0.80438 0.77780 1.90842 1.21981 1.78495 1.52971 1.21647 0.82982 0.98131 1.13262 1.22240 1.00960 0.92454 0.98515 1.22195 0.91535 1.03531 1.08072 1.25505 1.00484 0.82603 0.97299 1.84145 1.18748 1.37894 1.65103 1.22875 0.83355 1.05346 0.92259 1.22384 0.93802 0.90176 0.96486 0.75578 0.91499 0.93935 0.94203 0.88707 0.88897 0.90949 0.89505 0.87933 0.90341 0.82588 0.80184 0.73024 0.89672 0.84851 0.89901 0.86452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -11.72 19.25 74.32 1.43 -10.29 16 2 C -0.14 -6.37 11.62 31.13 0.36 -6.01 16 3 C 0.28 13.65 5.39 84.57 0.46 14.11 16 4 N -0.58 -28.44 1.98 -716.91 -1.42 -29.87 16 5 C -0.26 -14.24 9.66 84.03 0.81 -13.43 16 6 H 0.06 3.41 7.85 -2.91 -0.02 3.39 16 7 C -0.04 -2.28 5.07 84.86 0.43 -1.85 16 8 N -0.91 -52.20 9.27 21.65 0.20 -52.00 16 9 Si 0.96 45.56 29.57 68.60 2.03 47.59 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 12 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 13 C 0.13 5.00 4.48 85.63 0.38 5.39 16 14 C 0.49 17.96 7.77 87.66 0.68 18.64 16 15 O -0.57 -26.74 15.84 -3.04 -0.05 -26.79 16 16 N -0.62 -16.80 2.95 -817.24 -2.41 -19.21 16 17 C 0.10 2.59 6.59 86.42 0.57 3.16 16 18 C 0.11 2.43 6.60 86.42 0.57 3.00 16 19 N -0.60 -12.74 2.94 -821.97 -2.42 -15.16 16 20 C 0.60 14.26 7.65 86.44 0.66 14.92 16 21 O -0.56 -16.82 16.29 -4.36 -0.07 -16.89 16 22 C -0.11 -2.05 6.79 24.07 0.16 -1.89 16 23 C -0.12 -1.96 10.63 22.39 0.24 -1.72 16 24 C -0.23 -2.25 10.87 22.07 0.24 -2.01 16 25 C 0.01 0.07 12.08 67.10 0.81 0.88 16 26 O -0.16 -2.17 7.19 -5.10 -0.04 -2.21 16 27 C 0.08 1.38 6.37 86.55 0.55 1.93 16 28 C 0.09 1.76 6.52 86.55 0.56 2.32 16 29 H 0.23 7.38 7.80 -4.42 -0.03 7.34 16 30 H 0.07 3.77 6.39 -2.39 -0.02 3.75 16 31 H 0.04 1.94 8.13 -2.39 -0.02 1.92 16 32 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 33 H 0.10 3.01 7.65 -2.39 -0.02 2.99 16 34 H 0.09 3.20 7.81 -2.39 -0.02 3.18 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 2.58 7.00 -2.38 -0.02 2.56 16 37 H 0.10 2.35 6.99 -2.39 -0.02 2.33 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 40 H 0.18 0.76 8.06 -2.91 -0.02 0.73 16 41 H 0.25 -0.60 8.06 -2.91 -0.02 -0.62 16 42 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.13 1.78 4.06 -33.90 -0.14 1.64 16 44 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.12 1.88 5.91 -2.39 -0.01 1.87 16 Total: -1.00 -78.06 379.33 5.64 -72.42 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.89 Total: 14.96 kcal Atomic # 6 Polarization: 18.22 SS G_CDS: 8.92 Total: 27.14 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -6.05 Total: -116.23 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -0.16 Total: -45.88 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -78.06 5.64 -72.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491757601.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.532 kcal (2) G-P(sol) polarization free energy of solvation -78.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds