Wall clock time and date at job start Wed Apr 1 2020 03:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47329 * 2 1 4 4 H 1.09005 * 109.46821 * 305.81797 * 3 2 1 5 5 C 1.50700 * 109.47334 * 185.82084 * 3 2 1 6 6 H 1.08000 * 119.99779 * 239.99829 * 5 3 2 7 7 C 1.37876 * 120.00152 * 59.99380 * 5 3 2 8 8 N 1.31520 * 120.00002 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00035 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47098 * 90.00636 * 9 7 5 11 11 H 1.48498 * 109.47268 * 210.00687 * 9 7 5 12 12 H 1.48495 * 109.47146 * 330.00529 * 9 7 5 13 13 N 1.46894 * 109.47231 * 65.81635 * 3 2 1 14 14 C 1.46895 * 111.00261 * 206.73182 * 13 3 2 15 15 C 1.50697 * 109.47179 * 185.70730 * 14 13 3 16 16 O 1.21281 * 120.00303 * 0.02562 * 15 14 13 17 17 N 1.34783 * 120.00173 * 179.97438 * 15 14 13 18 18 C 1.39446 * 120.00119 * 174.86627 * 17 15 14 19 19 C 1.38967 * 119.85118 * 146.82094 * 18 17 15 20 20 C 1.38277 * 120.39670 * 180.02562 * 19 18 17 21 21 C 1.38786 * 119.83052 * 0.02562 * 20 19 18 22 22 C 1.41091 * 119.92997 * 0.02562 * 21 20 19 23 23 C 1.38313 * 119.89592 * 359.72220 * 22 21 20 24 24 C 1.47861 * 105.84917 * 179.97438 * 22 21 20 25 25 O 1.21446 * 125.74383 * 179.97438 * 24 22 21 26 26 N 1.34529 * 108.51748 * 0.02562 * 24 22 21 27 27 C 1.46500 * 124.44931 * 180.02562 * 26 24 22 28 28 C 1.34510 * 111.10123 * 359.97438 * 26 24 22 29 29 O 1.21476 * 125.67470 * 180.02562 * 28 26 24 30 30 H 1.08998 * 109.47292 * 181.01591 * 1 2 3 31 31 H 1.08998 * 109.46690 * 301.01673 * 1 2 3 32 32 H 1.08996 * 109.47389 * 61.01385 * 1 2 3 33 33 H 1.09001 * 109.47187 * 240.00041 * 2 1 3 34 34 H 1.09001 * 109.47581 * 120.00236 * 2 1 3 35 35 H 0.96997 * 119.99640 * 179.97438 * 8 7 5 36 36 H 1.00908 * 111.00213 * 330.68749 * 13 3 2 37 37 H 1.09000 * 109.47141 * 305.70448 * 14 13 3 38 38 H 1.08992 * 109.47498 * 65.70507 * 14 13 3 39 39 H 0.96995 * 119.99775 * 354.87181 * 17 15 14 40 40 H 1.07996 * 119.79848 * 359.97438 * 19 18 17 41 41 H 1.08002 * 120.07987 * 180.02562 * 20 19 18 42 42 H 1.08002 * 120.17758 * 180.29334 * 23 22 21 43 43 H 1.09001 * 109.47036 * 89.99765 * 27 26 24 44 44 H 1.08995 * 109.46878 * 209.99421 * 27 26 24 45 45 H 1.08996 * 109.47153 * 329.99663 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5941 1.9855 -0.8334 5 6 3.5401 1.4449 -0.1441 6 1 4.1558 1.8859 0.6259 7 6 4.1266 0.8842 -1.2589 8 7 3.3767 0.3477 -2.1968 9 14 5.9860 0.8879 -1.4378 10 1 6.5442 -0.3464 -0.8295 11 1 6.3446 0.9359 -2.8780 12 1 6.5472 2.0772 -0.7480 13 7 1.6684 2.0933 1.2634 14 6 1.5473 3.5471 1.0910 15 6 1.3042 4.1932 2.4306 16 8 1.2387 3.5100 3.4305 17 7 1.1605 5.5305 2.5176 18 6 0.8295 6.1183 3.7381 19 6 1.3201 7.3795 4.0541 20 6 0.9995 7.9726 5.2613 21 6 0.1834 7.3047 6.1635 22 6 -0.3157 6.0236 5.8466 23 6 0.0053 5.4392 4.6348 24 6 -1.1335 5.6103 7.0070 25 8 -1.7339 4.5601 7.1138 26 7 -1.1015 6.5940 7.9242 27 6 -1.7957 6.5477 9.2135 28 6 -0.3476 7.6250 7.5025 29 8 -0.1385 8.6493 8.1211 30 1 -0.3634 -1.0275 0.0182 31 1 -0.3632 0.5295 0.8807 32 1 -0.3634 0.4980 -0.8989 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.7893 -0.0464 -2.9812 36 1 0.8163 1.7010 1.6353 37 1 2.4682 3.9398 0.6600 38 1 0.7125 3.7658 0.4253 39 1 1.2872 6.0841 1.7313 40 1 1.9562 7.8991 3.3529 41 1 1.3833 8.9532 5.5015 42 1 -0.3781 4.4607 4.3855 43 1 -1.1392 6.1076 9.9640 44 1 -2.0672 7.5589 9.5164 45 1 -2.6971 5.9422 9.1193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518212003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:37 Heat of formation + Delta-G solvation = -41.280100 kcal Electronic energy + Delta-G solvation = -29118.777067 eV Core-core repulsion = 24909.618631 eV Total energy + Delta-G solvation = -4209.158436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.56378 -40.51777 -38.88900 -38.37528 -36.32534 -36.07385 -34.91931 -32.61838 -32.06002 -31.39083 -30.68181 -28.07037 -27.17920 -25.65806 -24.99212 -23.61730 -22.76765 -22.20931 -20.54607 -20.21291 -19.68942 -18.55773 -17.70887 -17.09376 -16.96849 -16.82113 -16.38775 -15.86001 -15.64057 -15.24751 -14.80514 -14.77451 -14.59050 -14.25711 -14.09896 -13.89072 -13.74686 -13.64328 -13.35918 -13.01210 -12.98219 -12.64074 -12.34171 -12.22847 -12.15728 -11.48772 -11.21999 -10.99014 -10.92840 -10.75253 -10.66627 -10.60205 -10.16374 -10.12020 -10.03213 -9.71496 -9.65194 -9.47271 -9.19391 -8.58347 -8.41481 -7.38851 -6.04475 -4.09305 -0.27117 0.66390 1.62419 2.01082 2.60229 2.65623 2.72657 3.28266 3.31339 3.35274 3.38277 3.40486 4.00763 4.29113 4.38484 4.58805 4.69119 4.72488 4.85109 4.89844 4.95103 5.10257 5.17652 5.21931 5.27357 5.38611 5.57840 5.63498 5.68825 5.76238 5.87888 5.93477 6.12324 6.14046 6.29989 6.36658 6.45726 6.78583 6.89699 6.95779 7.04633 7.12020 7.35383 7.36391 7.70520 7.82960 8.04154 8.15476 8.30220 8.61184 8.98662 9.56283 11.00685 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.002162 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.256977 B =12948.711335 C =13854.504224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.220 3.780 4 H 0.005 0.995 5 C -0.497 4.497 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.671 5.671 14 C 0.053 3.947 15 C 0.512 3.488 16 O -0.494 6.494 17 N -0.681 5.681 18 C 0.194 3.806 19 C -0.136 4.136 20 C -0.016 4.016 21 C -0.175 4.175 22 C -0.118 4.118 23 C -0.051 4.051 24 C 0.576 3.424 25 O -0.457 6.457 26 N -0.582 5.582 27 C 0.080 3.920 28 C 0.581 3.419 29 O -0.472 6.472 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.043 0.957 33 H 0.102 0.898 34 H 0.043 0.957 35 H 0.260 0.740 36 H 0.328 0.672 37 H 0.110 0.890 38 H 0.053 0.947 39 H 0.417 0.583 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.155 0.845 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.305 16.747 12.629 22.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.114 3.886 4 H 0.023 0.977 5 C -0.536 4.536 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.304 5.304 14 C -0.080 4.080 15 C 0.300 3.700 16 O -0.365 6.365 17 N -0.327 5.327 18 C 0.096 3.904 19 C -0.157 4.157 20 C -0.035 4.035 21 C -0.180 4.180 22 C -0.122 4.122 23 C -0.072 4.072 24 C 0.365 3.635 25 O -0.327 6.327 26 N -0.325 5.325 27 C -0.060 4.060 28 C 0.371 3.629 29 O -0.344 6.344 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.120 0.880 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.147 0.853 37 H 0.128 0.872 38 H 0.070 0.930 39 H 0.254 0.746 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.172 0.828 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.944 16.037 13.800 22.970 hybrid contribution 0.271 0.259 -0.987 1.056 sum -8.672 16.296 12.813 22.471 Atomic orbital electron populations 1.21892 0.99504 0.99827 0.99657 1.21781 0.91328 1.00046 1.03353 1.19206 0.95718 0.90243 0.83461 0.97719 1.21205 0.91125 1.37071 1.04186 0.91970 1.24960 0.98186 0.95494 0.95819 1.69867 1.34745 1.39313 1.09532 0.86530 0.85608 0.78520 0.76913 1.20699 1.21417 1.20004 1.60397 1.38558 0.99087 1.32347 1.21730 1.02760 0.93140 0.90353 1.21653 0.74646 0.80495 0.93175 1.90725 1.46022 1.62046 1.37722 1.43826 1.70147 1.08903 1.09863 1.17877 0.92642 0.92529 0.87305 1.21141 1.01280 0.95519 0.97727 1.20476 0.93031 0.99270 0.90735 1.20367 1.04604 0.96809 0.96178 1.20237 1.00612 0.95769 0.95581 1.20751 0.94429 1.00906 0.91129 1.18357 0.79702 0.82587 0.82838 1.90832 1.40893 1.22127 1.78894 1.46401 1.47577 1.18880 1.19612 1.21898 0.97801 1.04581 0.81703 1.18270 0.76986 0.81994 0.85641 1.90800 1.56754 1.25224 1.61591 0.94224 0.94577 0.93834 0.88013 0.93805 0.92977 0.85327 0.87198 0.92970 0.74553 0.83570 0.83712 0.82791 0.90706 0.89214 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.77 37.16 0.36 -2.46 16 2 C -0.13 -2.88 5.35 -26.73 -0.14 -3.02 16 3 C 0.22 5.13 2.02 -68.87 -0.14 4.99 16 4 H 0.01 0.13 7.83 -51.93 -0.41 -0.28 16 5 C -0.50 -13.01 8.62 -34.44 -0.30 -13.31 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.89 -24.32 11.29 55.43 0.63 -23.70 16 9 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.67 -13.52 5.83 -109.23 -0.64 -14.16 16 14 C 0.05 0.84 5.93 -4.98 -0.03 0.81 16 15 C 0.51 7.35 7.62 -10.98 -0.08 7.27 16 16 O -0.49 -8.94 13.99 5.56 0.08 -8.86 16 17 N -0.68 -6.78 5.32 -9.82 -0.05 -6.83 16 18 C 0.19 1.98 6.28 -83.68 -0.53 1.45 16 19 C -0.14 -1.02 9.94 -39.30 -0.39 -1.41 16 20 C -0.02 -0.12 10.08 -39.36 -0.40 -0.52 16 21 C -0.17 -1.79 6.40 -104.81 -0.67 -2.46 16 22 C -0.12 -1.38 6.40 -104.85 -0.67 -2.05 16 23 C -0.05 -0.63 8.67 -39.10 -0.34 -0.96 16 24 C 0.58 7.10 8.02 -12.43 -0.10 7.00 16 25 O -0.46 -6.77 17.68 5.41 0.10 -6.68 16 26 N -0.58 -6.04 3.02 -125.10 -0.38 -6.41 16 27 C 0.08 0.57 10.77 59.85 0.64 1.22 16 28 C 0.58 6.37 8.01 -12.58 -0.10 6.27 16 29 O -0.47 -5.93 17.68 5.39 0.10 -5.84 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.61 6.45 -51.93 -0.33 0.28 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 2.59 5.94 -51.93 -0.31 2.29 16 34 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 36 H 0.33 6.35 6.41 -39.29 -0.25 6.10 16 37 H 0.11 1.75 7.97 -51.93 -0.41 1.34 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.42 2.65 8.81 -40.82 -0.36 2.29 16 40 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.15 2.17 6.41 -52.49 -0.34 1.83 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.53 7.96 -51.93 -0.41 0.12 16 45 H 0.09 0.57 7.96 -51.93 -0.41 0.16 16 LS Contribution 383.53 15.07 5.78 5.78 Total: -1.00 -32.88 383.53 -8.13 -41.01 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.74 Total: 5.78 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -2.97 Total: 4.21 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.44 Total: -51.10 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: 0.27 Total: -21.37 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.88 -8.13 -41.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518212003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.273 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds