Wall clock time and date at job start Wed Apr 1 2020 03:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47329 * 2 1 4 4 H 1.09005 * 109.46821 * 305.81797 * 3 2 1 5 5 C 1.50700 * 109.47334 * 185.82084 * 3 2 1 6 6 H 1.08000 * 119.99779 * 239.99829 * 5 3 2 7 7 C 1.37876 * 120.00152 * 59.99380 * 5 3 2 8 8 N 1.31520 * 120.00002 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00035 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47098 * 90.00636 * 9 7 5 11 11 H 1.48498 * 109.47268 * 210.00687 * 9 7 5 12 12 H 1.48495 * 109.47146 * 330.00529 * 9 7 5 13 13 N 1.46894 * 109.47231 * 65.81635 * 3 2 1 14 14 C 1.46895 * 111.00261 * 206.73182 * 13 3 2 15 15 C 1.50697 * 109.47179 * 185.70730 * 14 13 3 16 16 O 1.21281 * 120.00303 * 0.02562 * 15 14 13 17 17 N 1.34783 * 120.00173 * 179.97438 * 15 14 13 18 18 C 1.39446 * 120.00119 * 174.86627 * 17 15 14 19 19 C 1.38967 * 119.85118 * 146.82094 * 18 17 15 20 20 C 1.38277 * 120.39670 * 180.02562 * 19 18 17 21 21 C 1.38786 * 119.83052 * 0.02562 * 20 19 18 22 22 C 1.41091 * 119.92997 * 0.02562 * 21 20 19 23 23 C 1.38313 * 119.89592 * 359.72220 * 22 21 20 24 24 C 1.47861 * 105.84917 * 179.97438 * 22 21 20 25 25 O 1.21446 * 125.74383 * 179.97438 * 24 22 21 26 26 N 1.34529 * 108.51748 * 0.02562 * 24 22 21 27 27 C 1.46500 * 124.44931 * 180.02562 * 26 24 22 28 28 C 1.34510 * 111.10123 * 359.97438 * 26 24 22 29 29 O 1.21476 * 125.67470 * 180.02562 * 28 26 24 30 30 H 1.08998 * 109.47292 * 181.01591 * 1 2 3 31 31 H 1.08998 * 109.46690 * 301.01673 * 1 2 3 32 32 H 1.08996 * 109.47389 * 61.01385 * 1 2 3 33 33 H 1.09001 * 109.47187 * 240.00041 * 2 1 3 34 34 H 1.09001 * 109.47581 * 120.00236 * 2 1 3 35 35 H 0.96997 * 119.99640 * 179.97438 * 8 7 5 36 36 H 1.00908 * 111.00213 * 330.68749 * 13 3 2 37 37 H 1.09000 * 109.47141 * 305.70448 * 14 13 3 38 38 H 1.08992 * 109.47498 * 65.70507 * 14 13 3 39 39 H 0.96995 * 119.99775 * 354.87181 * 17 15 14 40 40 H 1.07996 * 119.79848 * 359.97438 * 19 18 17 41 41 H 1.08002 * 120.07987 * 180.02562 * 20 19 18 42 42 H 1.08002 * 120.17758 * 180.29334 * 23 22 21 43 43 H 1.09001 * 109.47036 * 89.99765 * 27 26 24 44 44 H 1.08995 * 109.46878 * 209.99421 * 27 26 24 45 45 H 1.08996 * 109.47153 * 329.99663 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5941 1.9855 -0.8334 5 6 3.5401 1.4449 -0.1441 6 1 4.1558 1.8859 0.6259 7 6 4.1266 0.8842 -1.2589 8 7 3.3767 0.3477 -2.1968 9 14 5.9860 0.8879 -1.4378 10 1 6.5442 -0.3464 -0.8295 11 1 6.3446 0.9359 -2.8780 12 1 6.5472 2.0772 -0.7480 13 7 1.6684 2.0933 1.2634 14 6 1.5473 3.5471 1.0910 15 6 1.3042 4.1932 2.4306 16 8 1.2387 3.5100 3.4305 17 7 1.1605 5.5305 2.5176 18 6 0.8295 6.1183 3.7381 19 6 1.3201 7.3795 4.0541 20 6 0.9995 7.9726 5.2613 21 6 0.1834 7.3047 6.1635 22 6 -0.3157 6.0236 5.8466 23 6 0.0053 5.4392 4.6348 24 6 -1.1335 5.6103 7.0070 25 8 -1.7339 4.5601 7.1138 26 7 -1.1015 6.5940 7.9242 27 6 -1.7957 6.5477 9.2135 28 6 -0.3476 7.6250 7.5025 29 8 -0.1385 8.6493 8.1211 30 1 -0.3634 -1.0275 0.0182 31 1 -0.3632 0.5295 0.8807 32 1 -0.3634 0.4980 -0.8989 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.7893 -0.0464 -2.9812 36 1 0.8163 1.7010 1.6353 37 1 2.4682 3.9398 0.6600 38 1 0.7125 3.7658 0.4253 39 1 1.2872 6.0841 1.7313 40 1 1.9562 7.8991 3.3529 41 1 1.3833 8.9532 5.5015 42 1 -0.3781 4.4607 4.3855 43 1 -1.1392 6.1076 9.9640 44 1 -2.0672 7.5589 9.5164 45 1 -2.6971 5.9422 9.1193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000518212003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:36 Heat of formation + Delta-G solvation = -64.563040 kcal Electronic energy + Delta-G solvation = -29119.786691 eV Core-core repulsion = 24909.618631 eV Total energy + Delta-G solvation = -4210.168060 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.42222 -41.53342 -39.85115 -39.34497 -37.90622 -37.07787 -35.88252 -34.41950 -33.03961 -32.74710 -31.64794 -29.24196 -28.45773 -27.00357 -26.03830 -24.68607 -24.15930 -23.17535 -21.62212 -21.43273 -21.07443 -19.43529 -18.64740 -18.37653 -17.99154 -17.89791 -17.74165 -16.88709 -16.74902 -16.60804 -16.25375 -15.81837 -15.64266 -15.51694 -15.24163 -15.04741 -14.86771 -14.50101 -14.39163 -14.14248 -13.90069 -13.77929 -13.60247 -13.58483 -13.11803 -13.08255 -12.89484 -12.76996 -12.48427 -11.96180 -11.91187 -11.78272 -11.64320 -11.52296 -11.50654 -11.06555 -10.99856 -10.87399 -10.40644 -10.30427 -9.43710 -9.01426 -8.04722 -6.16355 -1.12651 -0.12401 0.77061 1.22174 1.43761 1.46843 1.52609 1.55198 1.76341 1.80725 2.46301 2.51368 2.57337 3.15352 3.20968 3.51546 3.63648 3.77308 3.91783 4.06285 4.11603 4.21777 4.33784 4.37498 4.43034 4.52274 4.57057 4.59468 4.62353 4.66485 4.73776 4.77337 4.90618 5.00547 5.10739 5.17280 5.22037 5.36048 5.45865 5.56538 5.63756 5.76159 5.88616 5.99781 6.22274 6.36873 6.48392 6.51791 6.89095 6.96543 7.06802 7.52674 8.98111 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.002162 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.256977 B =12948.711335 C =13854.504224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.228 3.772 4 H -0.012 1.012 5 C -0.511 4.511 6 H 0.049 0.951 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.953 3.047 10 H -0.284 1.284 11 H -0.283 1.283 12 H -0.269 1.269 13 N -0.684 5.684 14 C 0.052 3.948 15 C 0.520 3.480 16 O -0.537 6.537 17 N -0.658 5.658 18 C 0.179 3.821 19 C -0.107 4.107 20 C -0.004 4.004 21 C -0.176 4.176 22 C -0.137 4.137 23 C -0.067 4.067 24 C 0.575 3.425 25 O -0.493 6.493 26 N -0.580 5.580 27 C 0.072 3.928 28 C 0.584 3.416 29 O -0.486 6.486 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.261 0.739 36 H 0.331 0.669 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.437 0.563 40 H 0.189 0.811 41 H 0.179 0.821 42 H 0.127 0.873 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.637 19.461 12.651 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C 0.121 3.879 4 H 0.006 0.994 5 C -0.550 4.550 6 H 0.067 0.933 7 C -0.185 4.185 8 N -0.557 5.557 9 Si 0.779 3.221 10 H -0.210 1.210 11 H -0.209 1.209 12 H -0.194 1.194 13 N -0.318 5.318 14 C -0.080 4.080 15 C 0.309 3.691 16 O -0.412 6.412 17 N -0.306 5.306 18 C 0.082 3.918 19 C -0.128 4.128 20 C -0.023 4.023 21 C -0.181 4.181 22 C -0.141 4.141 23 C -0.088 4.088 24 C 0.365 3.635 25 O -0.367 6.367 26 N -0.322 5.322 27 C -0.067 4.067 28 C 0.375 3.625 29 O -0.360 6.360 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.150 0.850 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.278 0.722 40 H 0.206 0.794 41 H 0.196 0.804 42 H 0.145 0.855 43 H 0.104 0.896 44 H 0.123 0.877 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.285 18.824 13.824 24.781 hybrid contribution 0.045 -0.497 -0.949 1.072 sum -8.240 18.328 12.875 23.866 Atomic orbital electron populations 1.21754 0.96310 1.01211 1.00462 1.21633 0.94225 0.99300 1.01129 1.18953 0.94193 0.90608 0.84191 0.99438 1.21443 0.92720 1.36967 1.03876 0.93260 1.25618 1.01925 0.95307 0.95676 1.69981 1.36096 1.39791 1.09818 0.85641 0.81139 0.78348 0.76952 1.21003 1.20865 1.19377 1.60218 1.39159 1.01648 1.30731 1.21751 1.03725 0.90683 0.91867 1.21265 0.74280 0.81770 0.91811 1.90726 1.48342 1.63451 1.38691 1.43415 1.68887 1.07465 1.10864 1.17998 0.93210 0.93621 0.86952 1.21557 0.99627 0.93715 0.97862 1.20926 0.91372 1.00157 0.89895 1.20522 1.05092 0.96256 0.96232 1.20192 1.01602 0.96816 0.95485 1.20642 0.95725 1.00307 0.92132 1.18585 0.79157 0.82317 0.83407 1.90802 1.42587 1.23570 1.79697 1.46494 1.47359 1.18195 1.20164 1.22164 0.98104 1.05785 0.80631 1.18347 0.76663 0.81664 0.85784 1.90794 1.57390 1.25694 1.62075 0.92621 0.93002 0.93660 0.90954 0.95159 0.93028 0.84978 0.87372 0.90464 0.72181 0.79355 0.80381 0.85529 0.89641 0.87738 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 9.77 71.98 0.70 -4.43 16 2 C -0.12 -5.74 5.35 30.59 0.16 -5.57 16 3 C 0.23 10.76 2.02 44.17 0.09 10.85 16 4 H -0.01 -0.59 7.83 -2.38 -0.02 -0.61 16 5 C -0.51 -27.09 8.62 25.60 0.22 -26.87 16 6 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 7 C 0.01 0.71 5.29 84.65 0.45 1.15 16 8 N -0.92 -50.39 11.29 21.45 0.24 -50.15 16 9 Si 0.95 42.55 29.54 68.60 2.03 44.58 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 13 N -0.68 -27.74 5.83 -499.49 -2.91 -30.65 16 14 C 0.05 1.61 5.93 85.56 0.51 2.11 16 15 C 0.52 14.57 7.62 87.66 0.67 15.24 16 16 O -0.54 -19.75 13.99 -3.03 -0.04 -19.80 16 17 N -0.66 -11.70 5.32 -303.36 -1.61 -13.32 16 18 C 0.18 3.28 6.28 38.40 0.24 3.52 16 19 C -0.11 -1.15 9.94 22.45 0.22 -0.93 16 20 C 0.00 -0.05 10.08 22.41 0.23 0.17 16 21 C -0.18 -3.29 6.40 -19.99 -0.13 -3.42 16 22 C -0.14 -3.19 6.40 -20.01 -0.13 -3.32 16 23 C -0.07 -1.64 8.67 22.58 0.20 -1.44 16 24 C 0.58 14.58 8.02 86.83 0.70 15.27 16 25 O -0.49 -15.41 17.68 -3.54 -0.06 -15.48 16 26 N -0.58 -11.84 3.02 -786.63 -2.38 -14.22 16 27 C 0.07 0.99 10.77 127.77 1.38 2.36 16 28 C 0.58 12.05 8.01 86.75 0.69 12.74 16 29 O -0.49 -11.35 17.68 -3.64 -0.06 -11.42 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 1.73 6.45 -2.39 -0.02 1.71 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 3.78 5.94 -2.39 -0.01 3.76 16 34 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 36 H 0.33 12.88 6.41 -89.69 -0.58 12.31 16 37 H 0.11 3.36 7.97 -2.39 -0.02 3.34 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 39 H 0.44 4.11 8.81 -92.71 -0.82 3.30 16 40 H 0.19 0.51 8.06 -2.91 -0.02 0.48 16 41 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 42 H 0.13 3.80 6.41 -2.91 -0.02 3.79 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.10 1.11 7.96 -2.39 -0.02 1.10 16 45 H 0.09 1.20 7.96 -2.39 -0.02 1.18 16 Total: -1.00 -73.91 383.53 1.06 -72.85 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.33 Total: 20.16 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 6.20 Total: 17.44 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -6.66 Total: -108.34 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: -0.17 Total: -46.69 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -73.91 1.06 -72.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518212003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.286 kcal (2) G-P(sol) polarization free energy of solvation -73.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds