Wall clock time and date at job start Wed Apr 1 2020 03:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47207 * 2 1 4 4 N 1.46495 * 109.47441 * 119.99894 * 2 1 3 5 5 C 1.46504 * 119.99938 * 304.44416 * 4 2 1 6 6 C 1.50694 * 109.46918 * 263.61185 * 5 4 2 7 7 H 1.07999 * 120.00560 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99883 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00137 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00218 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46853 * 89.99893 * 10 8 6 12 12 H 1.48496 * 109.47184 * 210.00208 * 10 8 6 13 13 H 1.48500 * 109.47180 * 330.00585 * 10 8 6 14 14 C 1.34773 * 120.00250 * 124.44129 * 4 2 1 15 15 O 1.21367 * 119.99914 * 354.61608 * 14 4 2 16 16 C 1.49333 * 120.00507 * 174.61769 * 14 4 2 17 17 O 1.21386 * 119.99784 * 0.59937 * 16 14 4 18 18 N 1.34774 * 120.00448 * 180.60471 * 16 14 4 19 19 C 1.39830 * 120.00177 * 184.88608 * 18 16 14 20 20 C 1.38962 * 120.16396 * 144.75610 * 19 18 16 21 21 C 1.37829 * 120.29188 * 179.97438 * 20 19 18 22 22 C 1.39413 * 120.23333 * 359.97438 * 21 20 19 23 23 C 1.39247 * 119.03603 * 359.91968 * 22 21 20 24 24 C 1.37360 * 120.82164 * 0.16392 * 23 22 21 25 25 C 1.51149 * 106.19191 * 179.97438 * 23 22 21 26 26 C 1.51383 * 104.21207 * 0.10913 * 25 23 22 27 27 O 1.21286 * 126.43378 * 179.97438 * 26 25 23 28 28 N 1.34362 * 107.13129 * 359.93146 * 26 25 23 29 29 H 1.09005 * 109.47117 * 299.99718 * 1 2 3 30 30 H 1.08995 * 109.47391 * 59.99864 * 1 2 3 31 31 H 1.09007 * 109.46922 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47117 * 240.00282 * 2 1 3 33 33 H 1.09003 * 109.47398 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46835 * 299.99879 * 3 2 1 35 35 H 1.08995 * 109.46885 * 60.00114 * 3 2 1 36 36 H 1.08992 * 109.46954 * 23.61483 * 5 4 2 37 37 H 1.09004 * 109.46924 * 143.61622 * 5 4 2 38 38 H 0.96994 * 120.00273 * 180.02562 * 9 8 6 39 39 H 0.97003 * 119.99846 * 4.88290 * 18 16 14 40 40 H 1.08002 * 119.85977 * 359.95260 * 20 19 18 41 41 H 1.07999 * 119.88935 * 179.97438 * 21 20 19 42 42 H 1.07999 * 119.98428 * 179.97438 * 24 23 22 43 43 H 1.09000 * 110.50790 * 241.38559 * 25 23 22 44 44 H 1.09004 * 110.50435 * 118.83101 * 25 23 22 45 45 H 0.96997 * 123.87638 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5860 -0.2493 2.5245 6 6 2.6233 0.6742 3.1093 7 1 3.5153 0.9093 2.5476 8 6 2.4333 1.2198 4.3612 9 7 1.3469 0.9339 5.0452 10 14 3.7188 2.3651 5.0860 11 1 3.4076 3.7652 4.7010 12 1 3.7106 2.2451 6.5660 13 1 5.0601 1.9956 4.5667 14 6 2.8653 -1.7318 1.0745 15 8 3.1469 -2.1597 -0.0258 16 6 3.4574 -2.3591 2.2935 17 8 3.1673 -1.9382 3.3945 18 7 4.3139 -3.3925 2.1713 19 6 4.7888 -4.0457 3.3128 20 6 5.0185 -5.4160 3.2884 21 6 5.4871 -6.0625 4.4119 22 6 5.7348 -5.3461 5.5820 23 6 5.5035 -3.9731 5.5956 24 6 5.0350 -3.3272 4.4775 25 6 5.8618 -3.4991 6.9854 26 6 6.3073 -4.7552 7.7032 27 8 6.6855 -4.8321 8.8530 28 7 6.2041 -5.7691 6.8276 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 0.6358 0.2781 2.4408 37 1 1.4642 -1.1165 3.1736 38 1 1.2130 1.3180 5.9257 39 1 4.6009 -3.6832 1.2915 40 1 4.8288 -5.9771 2.3853 41 1 5.6630 -7.1277 4.3858 42 1 4.8599 -2.2618 4.5033 43 1 4.9908 -3.0665 7.4777 44 1 6.6748 -2.7742 6.9439 45 1 6.4300 -6.6890 7.0365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526112128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:06 Heat of formation + Delta-G solvation = -49.175374 kcal Electronic energy + Delta-G solvation = -30583.813434 eV Core-core repulsion = 26374.312634 eV Total energy + Delta-G solvation = -4209.500800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.48378 -40.41131 -38.89881 -37.80284 -36.30307 -35.84419 -33.64236 -32.82547 -32.33834 -31.28404 -28.96274 -27.98106 -27.23883 -26.75990 -24.77845 -23.00365 -22.71778 -21.67853 -21.24124 -20.38823 -18.94408 -17.95563 -17.59151 -16.84263 -16.59104 -16.51611 -16.14754 -16.05177 -15.17927 -14.92906 -14.72357 -14.33747 -14.09471 -13.98223 -13.69127 -13.47173 -13.18771 -13.15156 -13.07995 -12.92473 -12.60028 -12.39231 -12.34344 -11.81915 -11.76323 -11.55559 -11.31103 -11.08485 -10.99777 -10.86935 -10.80998 -10.59434 -10.30849 -10.22299 -9.97268 -9.64545 -9.57461 -8.95447 -8.70279 -8.30062 -7.90800 -7.60460 -6.04876 -4.06033 1.01947 1.29956 2.04377 2.39954 2.81159 2.91539 3.27506 3.35564 3.37628 3.63807 3.90590 3.94828 4.15284 4.39202 4.43921 4.79299 4.95493 5.04596 5.18444 5.31411 5.31721 5.36924 5.37350 5.55824 5.64279 5.71267 5.88064 5.94282 6.01085 6.05827 6.08263 6.24854 6.32759 6.33667 6.41574 6.59632 6.64701 6.67360 6.71152 6.89272 7.02522 7.30907 7.39146 7.52599 7.84200 7.85651 8.07184 8.17342 8.31483 8.63039 8.93650 9.55773 11.03996 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.003826 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.966489 B = 7316.332459 C = 9362.298061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.132 3.868 3 C -0.155 4.155 4 N -0.553 5.553 5 C 0.227 3.773 6 C -0.508 4.508 7 H 0.054 0.946 8 C 0.070 3.930 9 N -0.890 5.890 10 Si 0.888 3.112 11 H -0.282 1.282 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.508 3.492 15 O -0.564 6.564 16 C 0.488 3.512 17 O -0.428 6.428 18 N -0.661 5.661 19 C 0.142 3.858 20 C -0.114 4.114 21 C -0.118 4.118 22 C 0.113 3.887 23 C -0.117 4.117 24 C -0.068 4.068 25 C -0.117 4.117 26 C 0.530 3.470 27 O -0.513 6.513 28 N -0.658 5.658 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.036 0.964 37 H 0.064 0.936 38 H 0.261 0.739 39 H 0.417 0.583 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.154 0.846 43 H 0.128 0.872 44 H 0.124 0.876 45 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.270 -10.861 -5.230 13.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.029 3.971 3 C -0.213 4.213 4 N -0.284 5.284 5 C 0.109 3.891 6 C -0.547 4.547 7 H 0.072 0.928 8 C -0.132 4.132 9 N -0.529 5.529 10 Si 0.716 3.284 11 H -0.208 1.208 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.290 3.710 15 O -0.446 6.446 16 C 0.269 3.731 17 O -0.295 6.295 18 N -0.310 5.310 19 C 0.047 3.953 20 C -0.135 4.135 21 C -0.139 4.139 22 C 0.016 3.984 23 C -0.120 4.120 24 C -0.089 4.089 25 C -0.156 4.156 26 C 0.319 3.681 27 O -0.388 6.388 28 N -0.301 5.301 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.254 0.746 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.172 0.828 43 H 0.146 0.854 44 H 0.142 0.858 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 5.198 -10.541 -4.129 12.457 hybrid contribution 0.906 0.070 0.190 0.928 sum 6.104 -10.471 -3.939 12.744 Atomic orbital electron populations 1.22130 0.95032 1.01983 1.02578 1.21036 0.94093 0.93582 0.88370 1.22090 1.01369 0.95448 1.02356 1.48378 1.41474 1.28048 1.10458 1.19934 0.95904 0.97377 0.75932 1.21160 1.05300 1.26742 1.01461 0.92816 1.24777 0.95368 0.96540 0.96559 1.69906 1.26122 1.44115 1.12725 0.86664 0.82154 0.81073 0.78487 1.20832 1.21165 1.20049 1.19723 0.81023 0.81957 0.88266 1.90645 1.62683 1.63946 1.27331 1.20447 0.80650 0.80892 0.91067 1.90991 1.55300 1.56681 1.26533 1.43173 1.45825 1.33400 1.08578 1.17506 0.99038 0.90849 0.87936 1.20611 1.02114 0.92064 0.98733 1.20018 1.04140 0.99453 0.90308 1.18208 1.00061 0.93840 0.86300 1.19601 1.04056 0.92786 0.95543 1.20493 0.96105 1.02020 0.90235 1.21075 1.04847 0.97242 0.92444 1.20631 0.76188 0.86340 0.84967 1.90802 1.46979 1.85318 1.15680 1.43684 1.63564 1.11866 1.11033 0.91198 0.91967 0.92789 0.89297 0.92792 0.92790 0.90348 0.94604 0.91863 0.92880 0.74603 0.84778 0.85419 0.82822 0.85431 0.85807 0.75239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.10 37.15 0.34 -2.04 16 2 C 0.13 2.26 3.25 -67.94 -0.22 2.04 16 3 C -0.15 -2.54 8.91 37.16 0.33 -2.21 16 4 N -0.55 -11.10 2.37 -168.03 -0.40 -11.49 16 5 C 0.23 5.28 4.11 -5.19 -0.02 5.26 16 6 C -0.51 -12.86 6.82 -34.44 -0.23 -13.10 16 7 H 0.05 1.39 7.81 -52.49 -0.41 0.98 16 8 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 9 N -0.89 -24.67 13.29 55.43 0.74 -23.94 16 10 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 C 0.51 9.96 7.67 -11.64 -0.09 9.87 16 15 O -0.56 -11.03 15.82 5.48 0.09 -10.95 16 16 C 0.49 9.15 7.57 -11.64 -0.09 9.06 16 17 O -0.43 -9.34 9.57 5.47 0.05 -9.28 16 18 N -0.66 -9.72 5.32 -10.24 -0.05 -9.77 16 19 C 0.14 1.96 6.30 -83.64 -0.53 1.44 16 20 C -0.11 -1.21 9.94 -39.46 -0.39 -1.61 16 21 C -0.12 -1.15 10.07 -39.29 -0.40 -1.55 16 22 C 0.11 1.29 7.12 -83.48 -0.59 0.70 16 23 C -0.12 -1.55 6.36 -104.35 -0.66 -2.22 16 24 C -0.07 -1.03 8.67 -39.60 -0.34 -1.38 16 25 C -0.12 -1.44 6.87 -28.48 -0.20 -1.64 16 26 C 0.53 6.91 8.71 -10.84 -0.09 6.81 16 27 O -0.51 -8.25 18.03 5.55 0.10 -8.15 16 28 N -0.66 -7.00 5.89 -9.58 -0.06 -7.05 16 29 H 0.07 1.14 6.51 -51.93 -0.34 0.80 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.09 1.50 6.91 -51.93 -0.36 1.14 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.45 7.27 -51.93 -0.38 1.08 16 36 H 0.04 0.87 6.21 -51.93 -0.32 0.55 16 37 H 0.06 1.62 5.84 -51.93 -0.30 1.32 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.42 5.20 8.30 -40.82 -0.34 4.86 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.15 2.76 6.25 -52.49 -0.33 2.43 16 43 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 45 H 0.41 3.30 8.96 -40.82 -0.37 2.93 16 LS Contribution 375.42 15.07 5.66 5.66 Total: -1.00 -31.22 375.42 -7.85 -39.07 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.66 Total: 9.00 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: -3.29 Total: 11.19 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.23 Total: -52.25 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: 0.24 Total: -28.38 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.22 -7.85 -39.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526112128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.110 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds