Wall clock time and date at job start Wed Apr 1 2020 03:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47207 * 2 1 4 4 N 1.46495 * 109.47441 * 119.99894 * 2 1 3 5 5 C 1.46504 * 119.99938 * 304.44416 * 4 2 1 6 6 C 1.50694 * 109.46918 * 263.61185 * 5 4 2 7 7 H 1.07999 * 120.00560 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99883 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00137 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00218 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46853 * 89.99893 * 10 8 6 12 12 H 1.48496 * 109.47184 * 210.00208 * 10 8 6 13 13 H 1.48500 * 109.47180 * 330.00585 * 10 8 6 14 14 C 1.34773 * 120.00250 * 124.44129 * 4 2 1 15 15 O 1.21367 * 119.99914 * 354.61608 * 14 4 2 16 16 C 1.49333 * 120.00507 * 174.61769 * 14 4 2 17 17 O 1.21386 * 119.99784 * 0.59937 * 16 14 4 18 18 N 1.34774 * 120.00448 * 180.60471 * 16 14 4 19 19 C 1.39830 * 120.00177 * 184.88608 * 18 16 14 20 20 C 1.38962 * 120.16396 * 144.75610 * 19 18 16 21 21 C 1.37829 * 120.29188 * 179.97438 * 20 19 18 22 22 C 1.39413 * 120.23333 * 359.97438 * 21 20 19 23 23 C 1.39247 * 119.03603 * 359.91968 * 22 21 20 24 24 C 1.37360 * 120.82164 * 0.16392 * 23 22 21 25 25 C 1.51149 * 106.19191 * 179.97438 * 23 22 21 26 26 C 1.51383 * 104.21207 * 0.10913 * 25 23 22 27 27 O 1.21286 * 126.43378 * 179.97438 * 26 25 23 28 28 N 1.34362 * 107.13129 * 359.93146 * 26 25 23 29 29 H 1.09005 * 109.47117 * 299.99718 * 1 2 3 30 30 H 1.08995 * 109.47391 * 59.99864 * 1 2 3 31 31 H 1.09007 * 109.46922 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47117 * 240.00282 * 2 1 3 33 33 H 1.09003 * 109.47398 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46835 * 299.99879 * 3 2 1 35 35 H 1.08995 * 109.46885 * 60.00114 * 3 2 1 36 36 H 1.08992 * 109.46954 * 23.61483 * 5 4 2 37 37 H 1.09004 * 109.46924 * 143.61622 * 5 4 2 38 38 H 0.96994 * 120.00273 * 180.02562 * 9 8 6 39 39 H 0.97003 * 119.99846 * 4.88290 * 18 16 14 40 40 H 1.08002 * 119.85977 * 359.95260 * 20 19 18 41 41 H 1.07999 * 119.88935 * 179.97438 * 21 20 19 42 42 H 1.07999 * 119.98428 * 179.97438 * 24 23 22 43 43 H 1.09000 * 110.50790 * 241.38559 * 25 23 22 44 44 H 1.09004 * 110.50435 * 118.83101 * 25 23 22 45 45 H 0.96997 * 123.87638 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.5860 -0.2493 2.5245 6 6 2.6233 0.6742 3.1093 7 1 3.5153 0.9093 2.5476 8 6 2.4333 1.2198 4.3612 9 7 1.3469 0.9339 5.0452 10 14 3.7188 2.3651 5.0860 11 1 3.4076 3.7652 4.7010 12 1 3.7106 2.2451 6.5660 13 1 5.0601 1.9956 4.5667 14 6 2.8653 -1.7318 1.0745 15 8 3.1469 -2.1597 -0.0258 16 6 3.4574 -2.3591 2.2935 17 8 3.1673 -1.9382 3.3945 18 7 4.3139 -3.3925 2.1713 19 6 4.7888 -4.0457 3.3128 20 6 5.0185 -5.4160 3.2884 21 6 5.4871 -6.0625 4.4119 22 6 5.7348 -5.3461 5.5820 23 6 5.5035 -3.9731 5.5956 24 6 5.0350 -3.3272 4.4775 25 6 5.8618 -3.4991 6.9854 26 6 6.3073 -4.7552 7.7032 27 8 6.6855 -4.8321 8.8530 28 7 6.2041 -5.7691 6.8276 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 0.6358 0.2781 2.4408 37 1 1.4642 -1.1165 3.1736 38 1 1.2130 1.3180 5.9257 39 1 4.6009 -3.6832 1.2915 40 1 4.8288 -5.9771 2.3853 41 1 5.6630 -7.1277 4.3858 42 1 4.8599 -2.2618 4.5033 43 1 4.9908 -3.0665 7.4777 44 1 6.6748 -2.7742 6.9439 45 1 6.4300 -6.6890 7.0365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526112128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:05 Heat of formation + Delta-G solvation = -70.118403 kcal Electronic energy + Delta-G solvation = -30584.721592 eV Core-core repulsion = 26374.312634 eV Total energy + Delta-G solvation = -4210.408958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.52424 -41.82723 -40.19978 -39.06906 -37.80414 -37.07096 -34.86610 -34.71101 -33.31361 -32.85446 -30.03178 -29.18236 -28.97011 -28.04537 -26.15730 -24.90546 -23.80370 -22.74640 -22.25318 -21.68494 -20.35012 -19.12105 -18.85299 -18.52446 -18.18594 -17.80974 -17.38159 -17.08768 -16.72990 -16.54152 -16.05056 -15.81177 -15.37226 -15.21521 -14.89595 -14.72287 -14.60352 -14.28704 -14.22944 -14.12288 -13.93196 -13.80324 -13.52829 -13.40308 -13.29115 -12.95820 -12.77889 -12.68768 -12.41820 -12.36929 -12.24707 -12.00149 -11.84903 -11.63851 -11.47176 -11.39762 -10.74904 -10.57198 -10.10631 -9.83939 -9.56858 -8.66790 -8.08525 -6.13881 -0.05316 0.33784 0.60554 1.30828 1.38879 1.41702 1.48559 1.51201 1.97304 2.28021 2.43388 2.64641 2.77164 3.07484 3.26093 3.35404 3.55032 3.86066 4.02975 4.19646 4.23583 4.24699 4.37371 4.40246 4.41500 4.61416 4.65573 4.83541 4.90990 4.93328 4.97435 4.99725 5.11381 5.15118 5.23106 5.32242 5.37416 5.47850 5.49939 5.57015 5.66635 5.75460 5.82885 6.00185 6.17123 6.22508 6.40250 6.85301 6.90391 6.91420 7.16331 7.50532 8.99756 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.003826 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.966489 B = 7316.332459 C = 9362.298061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.124 3.876 3 C -0.147 4.147 4 N -0.561 5.561 5 C 0.249 3.751 6 C -0.499 4.499 7 H 0.044 0.956 8 C 0.024 3.976 9 N -0.922 5.922 10 Si 0.940 3.060 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.275 1.275 14 C 0.504 3.496 15 O -0.562 6.562 16 C 0.486 3.514 17 O -0.468 6.468 18 N -0.641 5.641 19 C 0.119 3.881 20 C -0.096 4.096 21 C -0.099 4.099 22 C 0.116 3.884 23 C -0.132 4.132 24 C -0.090 4.090 25 C -0.121 4.121 26 C 0.534 3.466 27 O -0.546 6.546 28 N -0.641 5.641 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.040 0.960 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.025 0.975 37 H 0.039 0.961 38 H 0.260 0.740 39 H 0.429 0.571 40 H 0.170 0.830 41 H 0.172 0.828 42 H 0.116 0.884 43 H 0.123 0.877 44 H 0.133 0.867 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.149 -12.880 -6.956 15.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.022 3.978 3 C -0.205 4.205 4 N -0.291 5.291 5 C 0.129 3.871 6 C -0.537 4.537 7 H 0.062 0.938 8 C -0.174 4.174 9 N -0.563 5.563 10 Si 0.767 3.233 11 H -0.199 1.199 12 H -0.213 1.213 13 H -0.200 1.200 14 C 0.287 3.713 15 O -0.444 6.444 16 C 0.267 3.733 17 O -0.339 6.339 18 N -0.291 5.291 19 C 0.024 3.976 20 C -0.117 4.117 21 C -0.120 4.120 22 C 0.019 3.981 23 C -0.136 4.136 24 C -0.111 4.111 25 C -0.160 4.160 26 C 0.322 3.678 27 O -0.424 6.424 28 N -0.284 5.284 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.059 0.941 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.268 0.732 40 H 0.188 0.812 41 H 0.190 0.810 42 H 0.134 0.866 43 H 0.141 0.859 44 H 0.151 0.849 45 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 6.107 -12.610 -5.920 15.210 hybrid contribution 0.680 0.587 0.634 1.100 sum 6.787 -12.023 -5.286 14.784 Atomic orbital electron populations 1.22076 0.93308 1.02270 1.03279 1.21332 0.95555 0.93632 0.87269 1.22026 1.00484 0.95161 1.02844 1.48380 1.41914 1.28590 1.10207 1.19400 0.94829 0.95693 0.77162 1.21269 1.04971 1.26289 1.01218 0.93785 1.25403 0.96883 0.98044 0.97118 1.70006 1.27707 1.45540 1.13000 0.85839 0.80101 0.79784 0.77597 1.19919 1.21288 1.20042 1.19941 0.80832 0.81858 0.88686 1.90628 1.62626 1.63872 1.27275 1.20429 0.81065 0.81588 0.90204 1.90993 1.57067 1.58273 1.27520 1.42963 1.44339 1.32045 1.09708 1.17731 1.00482 0.92266 0.87085 1.20975 1.00001 0.90397 1.00326 1.20482 1.01544 1.01335 0.88656 1.18362 0.99622 0.93060 0.87018 1.19590 1.04632 0.94098 0.95236 1.20249 0.98291 1.00587 0.91956 1.21102 1.05029 0.97584 0.92241 1.20570 0.75710 0.86893 0.84585 1.90787 1.48721 1.85822 1.17058 1.43481 1.62458 1.12279 1.10231 0.93093 0.88561 0.92724 0.88465 0.94053 0.89125 0.92939 0.95713 0.94326 0.93071 0.73185 0.81232 0.81039 0.86632 0.85944 0.84900 0.73342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.36 9.10 71.98 0.66 -3.71 16 2 C 0.12 4.15 3.25 44.99 0.15 4.30 16 3 C -0.15 -4.74 8.91 71.98 0.64 -4.09 16 4 N -0.56 -22.84 2.37 -803.87 -1.91 -24.75 16 5 C 0.25 12.07 4.11 85.63 0.35 12.42 16 6 C -0.50 -26.16 6.82 25.60 0.17 -25.98 16 7 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 8 C 0.02 1.33 5.46 84.65 0.46 1.79 16 9 N -0.92 -52.95 13.29 21.45 0.28 -52.66 16 10 Si 0.94 43.69 29.54 68.60 2.03 45.72 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 14 C 0.50 19.88 7.67 87.23 0.67 20.55 16 15 O -0.56 -21.44 15.82 -3.30 -0.05 -21.49 16 16 C 0.49 18.66 7.57 87.23 0.66 19.32 16 17 O -0.47 -21.52 9.57 -3.36 -0.03 -21.56 16 18 N -0.64 -18.53 5.32 -304.65 -1.62 -20.15 16 19 C 0.12 3.18 6.30 38.23 0.24 3.42 16 20 C -0.10 -1.70 9.94 22.35 0.22 -1.48 16 21 C -0.10 -1.51 10.07 22.46 0.23 -1.29 16 22 C 0.12 2.39 7.12 38.42 0.27 2.66 16 23 C -0.13 -3.52 6.36 -19.69 -0.13 -3.64 16 24 C -0.09 -2.82 8.67 22.26 0.19 -2.63 16 25 C -0.12 -3.04 6.87 29.46 0.20 -2.84 16 26 C 0.53 13.58 8.71 87.94 0.77 14.35 16 27 O -0.55 -17.48 18.03 -3.05 -0.05 -17.54 16 28 N -0.64 -12.22 5.89 -302.83 -1.78 -14.01 16 29 H 0.05 1.66 6.51 -2.38 -0.02 1.65 16 30 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.10 3.12 6.91 -2.38 -0.02 3.10 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.05 1.96 7.27 -2.39 -0.02 1.94 16 36 H 0.02 1.26 6.21 -2.39 -0.01 1.24 16 37 H 0.04 2.10 5.84 -2.39 -0.01 2.08 16 38 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 39 H 0.43 10.02 8.30 -92.71 -0.77 9.25 16 40 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 41 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.12 4.52 6.25 -2.91 -0.02 4.50 16 43 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 44 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 45 H 0.43 5.56 8.96 -92.71 -0.83 4.73 16 Total: -1.00 -70.68 375.42 2.09 -68.59 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: -0.53 Total: 24.70 kcal Atomic # 6 Polarization: 27.39 SS G_CDS: 5.76 Total: 33.15 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -5.03 Total: -111.57 kcal Atomic # 8 Polarization: -60.45 SS G_CDS: -0.14 Total: -60.59 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -70.68 2.09 -68.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526112128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.526 kcal (2) G-P(sol) polarization free energy of solvation -70.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds