Wall clock time and date at job start Wed Apr 1 2020 02:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47235 * 2 1 4 4 C 1.50704 * 109.47120 * 119.99781 * 2 1 3 5 5 N 1.29911 * 124.84772 * 120.00196 * 4 2 1 6 6 C 1.36082 * 108.79981 * 179.97438 * 5 4 2 7 7 C 1.39529 * 133.72535 * 180.02562 * 6 5 4 8 8 C 1.38350 * 119.66392 * 179.97438 * 7 6 5 9 9 N 1.39869 * 119.87266 * 180.02562 * 8 7 6 10 10 C 1.34771 * 120.00560 * 213.48080 * 9 8 7 11 11 O 1.21387 * 119.99791 * 5.27797 * 10 9 8 12 12 C 1.49339 * 120.00356 * 185.27880 * 10 9 8 13 13 O 1.21365 * 119.99741 * 359.97438 * 12 10 9 14 14 N 1.34771 * 120.00356 * 179.97438 * 12 10 9 15 15 C 1.46503 * 120.00493 * 179.97438 * 14 12 10 16 16 C 1.52995 * 109.47584 * 179.97438 * 15 14 12 17 17 C 1.50694 * 109.47406 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99722 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00251 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99905 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00107 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46889 * 89.99909 * 21 19 17 23 23 H 1.48499 * 109.47400 * 209.99784 * 21 19 17 24 24 H 1.48498 * 109.47411 * 330.00087 * 21 19 17 25 25 C 1.39352 * 120.25927 * 0.02562 * 8 7 6 26 26 C 1.37787 * 120.40479 * 0.27328 * 25 8 7 27 27 C 1.38723 * 119.97634 * 359.45105 * 26 25 8 28 28 O 1.34215 * 124.84891 * 299.97524 * 4 2 1 29 29 H 1.09000 * 109.46758 * 300.00107 * 1 2 3 30 30 H 1.09002 * 109.46910 * 59.99988 * 1 2 3 31 31 H 1.08996 * 109.46758 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47491 * 239.99773 * 2 1 3 33 33 H 1.08999 * 109.47066 * 59.99512 * 3 2 1 34 34 H 1.08999 * 109.47169 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.46528 * 300.00115 * 3 2 1 36 36 H 1.07996 * 120.16485 * 359.97438 * 7 6 5 37 37 H 0.97001 * 119.99431 * 33.47370 * 9 8 7 38 38 H 0.97006 * 120.00104 * 0.02562 * 14 12 10 39 39 H 1.08994 * 109.47124 * 300.00421 * 15 14 12 40 40 H 1.09006 * 109.46270 * 59.99827 * 15 14 12 41 41 H 1.09008 * 109.47201 * 300.00573 * 16 15 14 42 42 H 1.09000 * 109.47069 * 59.99767 * 16 15 14 43 43 H 0.96996 * 120.00180 * 180.02562 * 20 19 17 44 44 H 1.08005 * 119.79707 * 179.97438 * 25 8 7 45 45 H 1.08010 * 120.01534 * 179.72793 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 2.7824 -1.7710 1.2211 6 6 3.0415 -2.1364 2.5061 7 6 3.7751 -3.1725 3.0850 8 6 3.8476 -3.2734 4.4629 9 7 4.5822 -4.3100 5.0478 10 6 4.1760 -4.8491 6.2143 11 8 3.1230 -4.5026 6.7089 12 6 5.0213 -5.8727 6.8984 13 8 6.0738 -6.2195 6.4036 14 7 4.6153 -6.4114 8.0651 15 6 5.4442 -7.4160 8.7360 16 6 4.7601 -7.8599 10.0305 17 6 5.6130 -8.8927 10.7208 18 1 6.5493 -9.2020 10.2801 19 6 5.1977 -9.4437 11.9145 20 7 4.0574 -9.0675 12.4510 21 14 6.2547 -10.7246 12.7699 22 1 7.1987 -10.0489 13.6960 23 1 5.3851 -11.6510 13.5384 24 1 7.0207 -11.4920 11.7552 25 6 3.1917 -2.3463 5.2704 26 6 2.4604 -1.3240 4.7059 27 6 2.3833 -1.2069 3.3258 28 8 1.7692 -0.3373 2.4926 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9564 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 4.2836 -3.8921 2.4605 37 1 5.3841 -4.6410 4.6137 38 1 3.7738 -6.1345 8.4605 39 1 5.5744 -8.2765 8.0799 40 1 6.4184 -6.9861 8.9692 41 1 4.6302 -6.9990 10.6865 42 1 3.7857 -8.2894 9.7977 43 1 3.7654 -9.4549 13.2909 44 1 3.2530 -2.4323 6.3452 45 1 1.9508 -0.6114 5.3378 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543210446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:17 Heat of formation + Delta-G solvation = -42.262898 kcal Electronic energy + Delta-G solvation = -28063.965260 eV Core-core repulsion = 23854.764207 eV Total energy + Delta-G solvation = -4209.201053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.59814 -41.04386 -39.11838 -37.87831 -36.22399 -35.53255 -34.94472 -34.30087 -32.91071 -30.61079 -29.94457 -29.28631 -27.81490 -26.00893 -24.66359 -24.32209 -22.69940 -22.45059 -21.28542 -21.02603 -20.27666 -18.99492 -18.29314 -17.59014 -17.06585 -16.71926 -16.64751 -16.15680 -15.93522 -15.49211 -15.06198 -14.80665 -14.60434 -14.47743 -14.44028 -14.12120 -13.83841 -13.63675 -13.50637 -13.14673 -12.86886 -12.74281 -12.35919 -12.28706 -12.09781 -12.01109 -11.68274 -11.61612 -11.60040 -11.29114 -11.09749 -10.88026 -10.70255 -10.58225 -10.45690 -9.89185 -9.55765 -9.29802 -8.82242 -8.80597 -8.49990 -8.45754 -6.13576 -4.17506 0.32342 0.66258 1.47627 2.05243 2.08526 2.24398 3.11961 3.26942 3.28034 3.33565 3.36968 3.37622 3.65093 4.13136 4.23397 4.35956 4.38619 4.45931 4.53054 4.65475 4.77849 4.85646 4.94217 5.01456 5.09981 5.18635 5.23546 5.29663 5.31042 5.58078 5.59507 5.63262 5.73966 5.76894 5.85700 5.92367 6.09636 6.16803 6.32491 6.47919 6.61016 6.79311 7.25675 7.35154 7.49323 7.52330 7.71619 7.83017 8.09861 8.24232 8.87989 9.47757 10.97837 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.040788 B = 0.001505 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.312880 B =18596.563417 C =18948.766967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.004 4.004 3 C -0.151 4.151 4 C 0.256 3.744 5 N -0.479 5.479 6 C 0.041 3.959 7 C -0.090 4.090 8 C 0.155 3.845 9 N -0.647 5.647 10 C 0.511 3.489 11 O -0.497 6.497 12 C 0.501 3.499 13 O -0.528 6.528 14 N -0.682 5.682 15 C 0.118 3.882 16 C 0.011 3.989 17 C -0.525 4.525 18 H 0.060 0.940 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.898 3.102 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 C -0.091 4.091 26 C -0.070 4.070 27 C -0.005 4.005 28 O -0.209 6.209 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.143 0.857 37 H 0.426 0.574 38 H 0.411 0.589 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.263 0.737 44 H 0.155 0.845 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.903 21.580 -24.587 33.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 C -0.209 4.209 4 C 0.044 3.956 5 N -0.209 5.209 6 C -0.071 4.071 7 C -0.112 4.112 8 C 0.059 3.941 9 N -0.295 5.295 10 C 0.294 3.706 11 O -0.370 6.370 12 C 0.279 3.721 13 O -0.406 6.406 14 N -0.333 5.333 15 C -0.003 4.003 16 C -0.027 4.027 17 C -0.563 4.563 18 H 0.079 0.921 19 C -0.142 4.142 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.110 4.110 26 C -0.090 4.090 27 C -0.055 4.055 28 O -0.101 6.101 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.135 0.865 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.160 0.840 37 H 0.265 0.735 38 H 0.247 0.753 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.173 0.827 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.766 21.152 -24.841 33.132 hybrid contribution 0.258 -0.486 1.136 1.263 sum -5.508 20.665 -23.705 31.927 Atomic orbital electron populations 1.21911 0.92321 1.03216 1.03474 1.19921 0.97022 0.95929 0.89411 1.21908 1.01949 0.93544 1.03472 1.26457 0.93040 0.91243 0.84847 1.70641 1.16711 1.12610 1.20912 1.19410 1.01329 0.97830 0.88482 1.19840 1.00960 0.98077 0.92303 1.17358 0.96509 0.89266 0.90962 1.43165 1.28964 1.34459 1.22925 1.20706 0.86083 0.82615 0.81243 1.90787 1.22013 1.60172 1.63999 1.19655 0.86253 0.83040 0.83120 1.90766 1.23153 1.61501 1.65137 1.46247 1.25405 1.40719 1.20886 1.21992 0.94066 0.88701 0.95583 1.19365 0.96572 0.97120 0.89634 1.20999 1.06246 1.22772 1.06318 0.92136 1.24994 0.95149 0.96901 0.97160 1.69952 1.20683 1.43212 1.19155 0.86494 0.80122 0.81218 0.79607 1.20529 1.21138 1.19711 1.21072 0.96847 0.91797 1.01320 1.19729 1.00861 0.99657 0.88706 1.20329 0.99530 0.92417 0.93270 1.84464 1.61199 1.47819 1.16593 0.91558 0.90519 0.91754 0.86513 0.91564 0.91785 0.90535 0.83958 0.73528 0.75264 0.91659 0.91653 0.95613 0.95606 0.92744 0.82728 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.18 37.16 0.34 -0.31 16 2 C 0.00 -0.02 3.39 -91.76 -0.31 -0.33 16 3 C -0.15 -0.62 9.18 37.16 0.34 -0.28 16 4 C 0.26 2.46 6.74 -13.09 -0.09 2.37 16 5 N -0.48 -5.67 11.34 -8.71 -0.10 -5.77 16 6 C 0.04 0.50 7.23 -84.72 -0.61 -0.11 16 7 C -0.09 -0.98 10.00 -39.06 -0.39 -1.37 16 8 C 0.15 1.73 6.27 -83.73 -0.52 1.21 16 9 N -0.65 -7.28 5.32 -10.30 -0.05 -7.34 16 10 C 0.51 7.03 7.62 -11.64 -0.09 6.94 16 11 O -0.50 -7.52 14.15 5.46 0.08 -7.44 16 12 C 0.50 7.97 7.89 -11.64 -0.09 7.88 16 13 O -0.53 -9.33 16.48 5.48 0.09 -9.24 16 14 N -0.68 -11.61 5.55 -60.77 -0.34 -11.94 16 15 C 0.12 2.35 5.61 -4.04 -0.02 2.33 16 16 C 0.01 0.25 5.09 -27.89 -0.14 0.11 16 17 C -0.52 -14.13 9.11 -34.44 -0.31 -14.45 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 21 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 C -0.09 -1.00 8.63 -39.33 -0.34 -1.34 16 26 C -0.07 -0.71 10.05 -39.57 -0.40 -1.11 16 27 C -0.01 -0.06 7.43 -38.62 -0.29 -0.35 16 28 O -0.21 -2.23 10.77 3.45 0.04 -2.19 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 36 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.43 4.07 8.29 -40.82 -0.34 3.73 16 38 H 0.41 6.61 7.94 -40.82 -0.32 6.28 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.16 1.73 6.40 -52.48 -0.34 1.39 16 45 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -32.28 390.99 -7.74 -40.02 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.04 Total: 4.25 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -3.03 Total: 2.76 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.25 Total: -50.00 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.20 Total: -18.88 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.28 -7.74 -40.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543210446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.245 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds